A meta data visualization widget. More...

#include <OpenMS/VISUAL/MetaDataBrowser.h>

Inheritance diagram for MetaDataBrowser:

Collaboration diagram for MetaDataBrowser:

Public Slots
void	setStatus (const std::string &status)
	Set a list of error strings due to invalid date format. More...

Public Member Functions
	MetaDataBrowser (bool editable=false, QWidget *parent=nullptr, bool modal=false)
	Constructor with flag for edit mode. More...

void	add (PeakMap &exp)
	Adds a peak map. More...

void	add (MSSpectrum &spectrum)
	Adds a peak spectrum. More...

void	add (FeatureMap &map)
	Adds a feature map. More...

void	add (Feature &feature)
	Adds a feature. More...

void	add (ConsensusFeature &feature)
	Adds a consensus feature. More...

void	add (ConsensusMap &map)
	Adds a consensus map. More...

template<class MetaDataType >
void	add (MetaDataType &meta_data_object)
	A generic function to add data. More...

bool	isEditable () const
	Check if mode is editable or not. More...

Protected Slots
void	showDetails_ ()
	Raises the corresponding viewer from the widget stack according to the item selected in the tree. More...

void	saveAll_ ()
	Saves all changes and close explorer. More...

Friends
class	ProteinIdentificationVisualizer
	Defines friend classes that can use the functionality of the subclasses. More...

class	PeptideIdentificationVisualizer

Visualizer for the different classes
std::string	status_list_
	A list of setting errors due to invalid formats. More...

bool	editable_
	Indicates the mode. More...

QStackedWidget *	ws_
	A widgetstack that keeps track of all widgets. More...

QPushButton *	saveallbutton_
	Save button. More...

QPushButton *	closebutton_
	Close Button. More...

QPushButton *	cancelbutton_
	Cancel Button. More...

QPushButton *	undobutton_
	Undo Button. More...

QTreeWidget *	treeview_
	The tree. More...

void	visualize_ (ExperimentalSettings &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (SpectrumSettings &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (MetaInfoInterface &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Sample &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (HPLC &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Digestion &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Modification &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Tagging &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Gradient &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Software &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (ScanWindow &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (SourceFile &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (ContactPerson &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Instrument &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (IonSource &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (IonDetector &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (MassAnalyzer &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (DataProcessingPtr &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (ProteinIdentification &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (ProteinHit &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (PeptideHit &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Acquisition &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (AcquisitionInfo &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (MetaInfoDescription &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Precursor &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (Product &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (InstrumentSettings &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (PeptideIdentification &meta, QTreeWidgetItem *parent=nullptr)

void	visualize_ (DocumentIdentifier &meta, QTreeWidgetItem *parent=nullptr)

template<typename ContainerType >
void	visualizeAll_ (ContainerType &container, QTreeWidgetItem *parent)
	Visualizes all elements of a container. More...

void	connectVisualizer_ (BaseVisualizerGUI *ptr)
	Connects the Signals of all visualiser classes with Slot setStatus() More...

void	filterHits_ (double threshold, bool higher_better, int tree_item_id)
	Filters hits according to a score threshold. Takes the score orientation into account. More...

void	showAllHits_ (int tree_item_id)
	Shows hits. More...

Detailed Description

A meta data visualization widget.

It contains a tree view showing all objects of the meta data to be viewed in hierarchical order.

The meta info data of the tree items are shown in the right part of the viewer, when they are selected in the tree.

If the data has been modified exec() returns true . Otherwise false is returned.

Improvement:: Add generic mechanism to add items to data vectors e.g. for Instrument - IonSource (Hiwi)

Constructor & Destructor Documentation

◆ MetaDataBrowser()

MetaDataBrowser	(	bool	editable = `false`,
		QWidget *	parent = `nullptr`,
		bool	modal = `false`
	)

Constructor with flag for edit mode.

Member Function Documentation

◆ add() [1/7]

void add ( ConsensusFeature & feature )

Adds a consensus feature.

◆ add() [2/7]

void add ( ConsensusMap & map )

Adds a consensus map.

◆ add() [3/7]

void add ( Feature & feature )

Adds a feature.

◆ add() [4/7]

void add ( FeatureMap & map )

inline

Adds a feature map.

References FeatureMap::getProteinIdentifications(), FeatureMap::getUnassignedPeptideIdentifications(), and OpenMS::StringUtils::number().

◆ add() [5/7]

void add ( MetaDataType & meta_data_object )

inline

A generic function to add data.

The meta data information of all classes that for which a visualize_ method exists can be visualized.

References OpenMS::StringUtils::number().

◆ add() [6/7]

void add ( MSSpectrum & spectrum )

inline

Adds a peak spectrum.

References MSSpectrum::getFloatDataArrays(), MSSpectrum::getIntegerDataArrays(), MSSpectrum::getStringDataArrays(), and OpenMS::StringUtils::number().

◆ add() [7/7]

void add ( PeakMap & exp )

inline

Adds a peak map.

References OpenMS::StringUtils::number().

Referenced by TOPPViewBase::metadataFileDialog().

◆ connectVisualizer_()

void connectVisualizer_ ( BaseVisualizerGUI * ptr )

protected

Connects the Signals of all visualiser classes with Slot setStatus()

◆ filterHits_()

void filterHits_	(	double	threshold,
		bool	higher_better,
		int	tree_item_id
	)

protected

Filters hits according to a score threshold. Takes the score orientation into account.

◆ isEditable()

bool isEditable ( ) const

Check if mode is editable or not.

◆ saveAll_

void saveAll_ ( )

protectedslot

Saves all changes and close explorer.

◆ setStatus

void setStatus ( const std::string & status )

slot

Set a list of error strings due to invalid date format.

◆ showAllHits_()

void showAllHits_ ( int tree_item_id )

protected

Shows hits.

◆ showDetails_

void showDetails_ ( )

protectedslot

Raises the corresponding viewer from the widget stack according to the item selected in the tree.

◆ visualize_() [1/29]

void visualize_	(	Acquisition &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [2/29]

void visualize_	(	AcquisitionInfo &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [3/29]

void visualize_	(	ContactPerson &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [4/29]

void visualize_	(	DataProcessingPtr &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [5/29]

void visualize_	(	Digestion &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [6/29]

void visualize_	(	DocumentIdentifier &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [7/29]

void visualize_	(	ExperimentalSettings &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [8/29]

void visualize_	(	Gradient &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [9/29]

void visualize_	(	HPLC &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [10/29]

void visualize_	(	Instrument &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [11/29]

void visualize_	(	InstrumentSettings &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [12/29]

void visualize_	(	IonDetector &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [13/29]

void visualize_	(	IonSource &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [14/29]

void visualize_	(	MassAnalyzer &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [15/29]

void visualize_	(	MetaInfoDescription &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [16/29]

void visualize_	(	MetaInfoInterface &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [17/29]

void visualize_	(	Modification &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [18/29]

void visualize_	(	PeptideHit &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [19/29]

void visualize_	(	PeptideIdentification &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [20/29]

void visualize_	(	Precursor &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [21/29]

void visualize_	(	Product &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [22/29]

void visualize_	(	ProteinHit &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [23/29]

void visualize_	(	ProteinIdentification &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [24/29]

void visualize_	(	Sample &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [25/29]

void visualize_	(	ScanWindow &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [26/29]

void visualize_	(	Software &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [27/29]

void visualize_	(	SourceFile &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [28/29]

void visualize_	(	SpectrumSettings &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualize_() [29/29]

void visualize_	(	Tagging &	meta,
		QTreeWidgetItem *	parent = `nullptr`
	)

protected

◆ visualizeAll_()

void visualizeAll_	(	ContainerType &	container,
		QTreeWidgetItem *	parent
	)

inlineprotected

Visualizes all elements of a container.

Friends And Related Function Documentation

◆ PeptideIdentificationVisualizer

friend class PeptideIdentificationVisualizer

friend

◆ ProteinIdentificationVisualizer

friend class ProteinIdentificationVisualizer

friend

Defines friend classes that can use the functionality of the subclasses.

Member Data Documentation

◆ cancelbutton_

QPushButton* cancelbutton_

protected

Cancel Button.

◆ closebutton_

QPushButton* closebutton_

protected

Close Button.

◆ editable_

bool editable_

protected

Indicates the mode.

◆ saveallbutton_

QPushButton* saveallbutton_

protected

Save button.

◆ status_list_

std::string status_list_

protected

A list of setting errors due to invalid formats.

◆ treeview_

QTreeWidget* treeview_

protected

The tree.

◆ undobutton_

QPushButton* undobutton_

protected

Undo Button.

◆ ws_

QStackedWidget* ws_

protected

A widgetstack that keeps track of all widgets.

Public Slots

Public Member Functions

Protected Slots

Friends

Visualizer for the different classes

Detailed Description

Constructor & Destructor Documentation

◆ MetaDataBrowser()

Member Function Documentation

◆ add() [1/7]

◆ add() [2/7]

◆ add() [3/7]

◆ add() [4/7]

◆ add() [5/7]

◆ add() [6/7]

◆ add() [7/7]

◆ connectVisualizer_()

◆ filterHits_()

◆ isEditable()

◆ saveAll_

◆ setStatus

◆ showAllHits_()

◆ showDetails_

◆ visualize_() [1/29]

◆ visualize_() [2/29]

◆ visualize_() [3/29]

◆ visualize_() [4/29]

◆ visualize_() [5/29]

◆ visualize_() [6/29]

◆ visualize_() [7/29]

◆ visualize_() [8/29]

◆ visualize_() [9/29]

◆ visualize_() [10/29]

◆ visualize_() [11/29]

◆ visualize_() [12/29]

◆ visualize_() [13/29]

◆ visualize_() [14/29]

◆ visualize_() [15/29]

◆ visualize_() [16/29]

◆ visualize_() [17/29]

◆ visualize_() [18/29]

◆ visualize_() [19/29]

◆ visualize_() [20/29]

◆ visualize_() [21/29]

◆ visualize_() [22/29]

◆ visualize_() [23/29]

◆ visualize_() [24/29]

◆ visualize_() [25/29]

◆ visualize_() [26/29]

◆ visualize_() [27/29]

◆ visualize_() [28/29]

◆ visualize_() [29/29]

◆ visualizeAll_()

Friends And Related Function Documentation

◆ PeptideIdentificationVisualizer

◆ ProteinIdentificationVisualizer

Member Data Documentation

◆ cancelbutton_

◆ closebutton_

◆ editable_

◆ saveallbutton_

◆ status_list_

◆ treeview_

◆ undobutton_

◆ ws_