- n -

n : EGHFitter1D::Data , EmgFitter1D::Data , RANSACParam
n_ : LinearRegressionWithoutIntercept
n_buffer_ : Bzip2Ifstream , GzipIfstream
n_decoys_ : ConfidenceScoring
n_detecting_l : MRMFeatureQC::ComponentGroupQCs
n_detecting_u : MRMFeatureQC::ComponentGroupQCs
n_external_features_ : FeatureFinderIdentificationAlgorithm
n_external_peps_ : FeatureFinderIdentificationAlgorithm
n_fractions : PeptideAndProteinQuant::Statistics
n_heavy_l : MRMFeatureQC::ComponentGroupQCs
n_heavy_u : MRMFeatureQC::ComponentGroupQCs
n_hits_ : XQuestResultXMLHandler , XQuestResultXMLFile
n_identifying_l : MRMFeatureQC::ComponentGroupQCs
n_identifying_u : MRMFeatureQC::ComponentGroupQCs
n_internal_features_ : FeatureFinderIdentificationAlgorithm
n_internal_peps_ : FeatureFinderIdentificationAlgorithm
n_isotopes_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
n_light_l : MRMFeatureQC::ComponentGroupQCs
n_light_u : MRMFeatureQC::ComponentGroupQCs
n_ms_files : PeptideAndProteinQuant::Statistics
n_parts_ : SimpleSVM
n_peaks : MorpheusScore::Result
n_points_ : AbsoluteQuantitationMethod
n_quantifying_l : MRMFeatureQC::ComponentGroupQCs
n_quantifying_u : MRMFeatureQC::ComponentGroupQCs
n_samples : PeptideAndProteinQuant::Statistics
n_shared_ : FeatureFinderAlgorithmMetaboIdent
n_spectra_ : SpectrumLookup
n_study_variables_ : MzTab::CMMzTabStream
n_term_gain_ : DigestionEnzymeProtein
n_term_mod_ : AASequence
N_TERMINAL_AA : PeptideEvidence
N_TERMINAL_POSITION : PeptideEvidence
n_transitions_ : ConfidenceScoring
n_transitions_l : MRMFeatureQC::ComponentGroupQCs
n_transitions_u : MRMFeatureQC::ComponentGroupQCs
na_string_ : MSstatsFile , TriqlerFile
name : ControlledVocabulary::CVTerm , CsiFingerIdMzTabWriter::CsiAdapterHit , CVTerm::Unit , DecoyHelper::Result , FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound , IdentifiedCompound , MzIdentMLDOMHandler::AnalysisSoftware , MzIdentMLDOMHandler::DatabaseInput , SemanticValidator::CVTerm , ToolDescriptionInternal , IsobaricQuantitationMethod::IsobaricChannelInformation , ItraqConstants::ChannelInfo , MzTabContactMetaData , MzTabInstrumentMetaData , Param::ParamEntry , Param::ParamIterator::TraceInfo , Param::ParamNode , ParameterInformation , QcMLFile::Attachment , QcMLFile::QualityParameter , RawMSSignalSimulation::ContaminantInfo
name_ : AdductInfo , Contaminants , ControlledVocabulary , CVReference , CVTerm , DigestionEnzyme , Element , BaseException , FeatureSummary , HMMState , IdentificationHit , IdentificationSummary , IMSElement , IncludeExcludeTarget , Instrument , InstrumentVisualizer , PTMXMLHandler , ItraqEightPlexQuantitationMethod , ItraqFourPlexQuantitationMethod , LayerData , MetaInfoDescription , ModelDescription< D > , Ms2IdentificationRate , Ms2SpectrumStats , MSChromatogram , MSSpectrum , MzTabParameter , QcMLFile , ReactionMonitoringTransition , Residue , ResidueModification , Ribonucleotide , RTAlignment , Sample , Software , SpectrumCount , TIC , TMTElevenPlexQuantitationMethod , TMTSixPlexQuantitationMethod , TMTSixteenPlexQuantitationMethod , TMTTenPlexQuantitationMethod , TOPPASToolVertex
name_att_ : SemanticValidator
name_of_file_ : SourceFile , SourceFileVisualizer
name_to_counter_map_ : StreamHandler
name_to_index_ : MetaInfoRegistry
name_to_residue_ : CompNovoIdentificationBase
name_to_state_ : HiddenMarkovModel
name_to_stream_map_ : StreamHandler
name_to_type_map_ : StreamHandler
names_ : ElementDB , QcMLFile
names_of_missing_decoy : PeptideIndexing
names_of_modeltype : MZTrafoModel
names_of_oswlevel : OSWFile
names_of_quantmethod : MassTrace
names_of_requires : QCBase
names_of_toleranceUnit : QCBase
names_of_unmatched : PeptideIndexing
NamesOfAcquisitionMode : IonDetector
NamesOfActivationMethod : Precursor
NamesOfActivationMethodShort : Precursor
NamesOfAnalyzerType : MassAnalyzer
NamesOfAnnotationState : BaseFeature
NamesOfChecksumType : SourceFile
NamesOfDerivatizationAgent : IsotopeLabelingMDVs
NamesOfInletType : IonSource
NamesOfIonizationMethod : IonSource
NamesOfIonOpticsType : Instrument
NamesOfIsotopeVariant : Tagging
NamesOfLabelType : LayerData
NamesOfMassIntensityType : IsotopeLabelingMDVs
NamesOfNumpressCompression : MSNumpressCoder
NamesOfPeakMassType : ProteinIdentification
NamesOfPolarity : IonSource
NamesOfProcessingAction : DataProcessing
NamesOfQuantTypes : MSQuantifications
NamesOfReflectronState : MassAnalyzer
NamesOfResolutionMethod : MassAnalyzer
NamesOfResolutionType : MassAnalyzer
NamesOfSampleState : Sample
NamesOfScanDirection : MassAnalyzer
NamesOfScanLaw : MassAnalyzer
NamesOfScanMode : InstrumentSettings
NamesOfScoringMatrices : NeedlemanWunsch
NamesOfSpecificity : EnzymaticDigestion
NamesOfSpecificityType : Modification
NamesOfSpectrumType : SpectrumSettings
NamesOfType : IonDetector
namesToIds_ : ControlledVocabulary
nan_ : SVOutStream
native_id : SpectrumMetaDataLookup::SpectrumMetaData
native_id_ : ChromatogramSettings , SpectrumSettings , SpectrumSettingsVisualizer
native_id_accession : SiriusMSFile::AccessionInfo
native_id_type : SiriusMSFile::AccessionInfo
native_id_type_ : SourceFile , SourceFileVisualizer
native_id_type_accession_ : SourceFile
native_ids : CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMSFile::CompoundInfo , SiriusMzTabWriter::SiriusAdapterIdentification
native_ids_id : SiriusMSFile::CompoundInfo
native_spectrum_name_ : PepXMLFile
nativeid_to_index_ : QCBase::SpectraMap
near_ : Plot3DOpenGLCanvas
nearest_neighbour_index_ : MinimumDistance
needs_ : TOPPViewMenu::ActionRequirement_
neg_ : ROCCurve
neg_adducts_ : AccurateMassSearchEngine
neg_adducts_fname_ : AccurateMassSearchEngine
neg_charges_ : Compomer
negative_mode_ : MetaboliteFeatureDeconvolution
negative_prior_ : PosteriorErrorProbabilityModel
neighbors_ : QTCluster::BulkData
nesting_level_ : MzXMLHandler
net_charge_ : Compomer
network_manager_ : TOPPASBase
network_reply_ : TOPPASBase
neutral_loss_average_masses_ : ResidueModification
neutral_loss_avg_masses_ : UnimodXMLHandler
neutral_loss_diff_formula_ : UnimodXMLHandler
neutral_loss_diff_formulas_ : UnimodXMLHandler , ResidueModification
neutral_loss_mono_masses_ : UnimodXMLHandler , ResidueModification
neutral_losses_for_ions_ : SequestInfile
new_code_ : Ribonucleotide
new_eluent_ : GradientVisualizer
new_node : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
new_score_ : IDScoreSwitcherAlgorithm
new_score_type_ : IDScoreSwitcherAlgorithm
new_timepoint_ : GradientVisualizer
newdescription_ : MetaInfoVisualizer
newkey_ : MetaInfoVisualizer
newline_ : SVOutStream
newRowButton_ : ListEditor
newvalue_ : MetaInfoVisualizer
next_consumer_ : MSDataAggregatingConsumer
next_index_ : MetaInfoRegistry
next_v : IDBoostGraph::dfs_ccsplit_visitor
nextrow_ : GradientVisualizer , MetaInfoVisualizer
nilVal : Pattern< TNeedle, FuzzyAC >
nn_threshold : MRMFeatureSelector::SelectorParameters
no_exceptions : Summary
no_id : RNPxlReportRow
no_mzml_ : MzCalibration
no_precursors : IDMapper::SpectraIdentificationState
no_rt_error_ : MascotXMLHandler
NoCleavage : EnzymaticDigestion
node_offset_ : TOPPASBase
nodes : Param::ParamNode
nodes_ : SimpleSVM
noID_penalty_ : QTClusterFinder
noise_for_empty_window_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
noise_level_ : PeakPickerCWT
noise_threshold_constant_ : MetaboTargetedAssay
noise_threshold_int_ : MassTraceDetection
noloss_regex_ : SpectrumAnnotator
nominal_mass_ : IMSIsotopeDistribution
norm_factor : FeatureDistance::DistanceParams_
norm_rt_score : OpenSwath_Scores
normalization_enabled_ : IsobaricQuantifier
normalize_xcorr_ : SequestInfile
normalized_experimental_rt : OpenSwath_Scores
note : TransformationModel::DataPoint
np_compression : MzMLHandlerHelper::BinaryData , MSNumpressCoder::NumpressConfig
np_config_fda_ : PeakFileOptions
np_config_int_ : PeakFileOptions
np_config_mz_ : PeakFileOptions
nr_charges_ : DiaPrescore
nr_isotopes_ : DiaPrescore
nr_iterations_ : PeakPickerIterative
nr_ms1_spectra_ : CachedSwathFileConsumer , MzMLSwathFileConsumer , SwathQC
nr_ms2_spectra_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
nr_partitions_ : QTClusterFinder
nr_peaks : OpenSwath_Scores
nr_windows : SignalToNoiseEstimatorMedianRapid::NoiseEstimator
nrPrefractionationGroups_ : IDBoostGraph
nt_regex_ : SpectrumAnnotator
NTerm_loss_formulas_ : Residue
NTerm_loss_names_ : Residue
nucleic_acid_data_ : MzTab
nucleic_acid_search_engine_score : MzTabMetaData
nucleotide_reading_frame_ : SequestInfile
num_frags_ : SequestOutfile
num_interest : DBSuitability::SuitabilityData
num_iso_peaks_mean : OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_linear_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_linear_beta : OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_xlinks_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
num_iso_peaks_mean_xlinks_beta : OPXLDataStructs::CrossLinkSpectrumMatch
num_maps_ : KDTreeFeatureMaps , QTCluster::BulkData , QTClusterFinder
num_ms2_spectra : Ms2IdentificationRate::IdentificationRateData
num_oligos_distinct_ms_run : MzTabNucleicAcidSectionRow
num_oligos_unique_ms_run : MzTabNucleicAcidSectionRow
num_osms_ms_run : MzTabNucleicAcidSectionRow
NUM_PARAMS_ : EGHTraceFitter , GaussTraceFitter
num_peptide_identification : Ms2IdentificationRate::IdentificationRateData
num_peptides_distinct_ms_run : MzTabProteinSectionRow
num_peptides_unique_ms_run : MzTabProteinSectionRow
num_psms_ms_run : MzTabProteinSectionRow
num_re_ranked : DBSuitability::SuitabilityData
num_top_db : DBSuitability::SuitabilityData
num_top_novo : DBSuitability::SuitabilityData
number : FuzzyStringComparator::StreamElement_
number_ : Sample
number_intensity_levels : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
number_ms2_empty : IsobaricQuantifierStatistics
number_ms2_total : IsobaricQuantifierStatistics
number_of_decoy : ProteinResolver::MSDGroup
number_of_experimental_peptides : ProteinResolver::ProteinEntry
number_of_max_aa_ : MassDecomposition
number_of_missed_cleavages_ : XTandemInfile
number_of_runs_ : ConsensusIDAlgorithm
number_of_target : ProteinResolver::MSDGroup
number_of_target_plus_decoy : ProteinResolver::MSDGroup
number_of_threads_ : XTandemInfile
number_regions : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
number_top_hits_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
numden_r_ids_ : MzQuantMLHandler
numerator_ref_ : ConsensusFeature::Ratio
numpressErrorTolerance : MSNumpressCoder::NumpressConfig
numpressFixedPoint : MSNumpressCoder::NumpressConfig