- u -

• uisTransitions() : MRMAssay
• UnableToCalibrate() : UnableToCalibrate
• UnableToCreateFile() : UnableToCreateFile
• UnableToFit() : UnableToFit
• uncompressString() : ZlibCompression
• undo() : Colorizer
• undo_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , MetaInfoVisualizer , ModificationVisualizer , PeptideHitVisualizer , PeptideIdentificationVisualizer , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , ProteinIdentificationVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , SpectrumSettingsVisualizer , TaggingVisualizer
• undoAll() : Colorizer
• unify() : SpectrumSettings
• UnimodXMLFile() : UnimodXMLFile
• UnimodXMLHandler() : UnimodXMLHandler
• unique_xerces_ptr() : unique_xerces_ptr< T >
• UniqueIdGenerator() : UniqueIdGenerator
• UniqueIdInterface() : UniqueIdInterface
• uniqueIdToIndex() : UniqueIdIndexer< T >
• Unit() : CVTerm::Unit
• united() : DRange< D >
• unlock() : GUILock
• UnnormalizedComparator() : UnnormalizedComparator
• unquote() : String
• unregister() : LogStreamNotifier
• UnregisteredParameter() : UnregisteredParameter
• unregisterStream() : StreamHandler
• unselectAll() : TOPPASScene
• untargetedMatching() : TargetedSpectraExtractor
• unWeightData() : TransformationModel
• unWeightDatum() : TransformationModel
• update() : LayerListView , AsymmetricStatistics< RealT > , BasicStatistics< RealT > , Param , QTCluster , SwathLibraryStats , TOPPViewMenu
• update_() : AcquisitionInfoVisualizer , AcquisitionVisualizer , BaseVisualizer< ObjectType > , ContactPersonVisualizer , DataProcessingVisualizer , DigestionVisualizer , DocumentIdentifierVisualizer , ExperimentalSettingsVisualizer , GradientVisualizer , HPLCVisualizer , InstrumentSettingsVisualizer , InstrumentVisualizer , IonDetectorVisualizer , IonSourceVisualizer , MassAnalyzerVisualizer , MetaInfoDescriptionVisualizer , ModificationVisualizer , PeptideHitVisualizer , Plot3DCanvas , PlotCanvas , PrecursorVisualizer , ProductVisualizer , ProteinHitVisualizer , SampleVisualizer , ScanWindowVisualizer , SoftwareVisualizer , SourceFileVisualizer , SpectrumSettingsVisualizer , TaggingVisualizer
• updateAllIDReferences() : Feature
• updateAndMovePepIDs_() : IDMergerAlgorithm
• updateAvgDaError_() : PeakGroup
• updateAvgPPMError_() : PeakGroup
• updateAxes() : PlotWidget
• updateBarsAndMenus() : TOPPViewBase
• updateBaseline() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
• updateBoxStates() : IsotopeWaveletTransform< PeakType >
• updateCandidateMassBins_() : FLASHDeconvAlgorithm
• updateChannelMap() : ItraqConstants
• updateChargeFitScoreAndChargeIntensities_() : PeakGroup
• updateChargeRange_() : PeakGroup
• updateCheckBoxItem() : TableView
• updateClustering_() : QTClusterFinder
• updateClusterProxies_() : FeatureGroupingAlgorithmKD
• updateColor() : TOPPASEdge
• updateCombinedILP() : PSLPFormulation
• updateCurrentFeature_() : FeatureXMLHandler
• updateCurrentOutputFileNames() : TOPPASToolVertex
• updateCurrentPath() : TOPPASBase , TOPPViewBase
• updateCursor_() : PlotCanvas
• updateCWD_() : InputFileList
• updatedCWD() : InputFile , InputFileList
• updatedFile() : InputFile
• updatedSingleCell_() : SpectraIDViewTab
• updatedSingleProteinCell_() : SpectraIDViewTab
• updateEdgeColors() : TOPPASScene
• updateEditorGeometry() : ListEditorDelegate , ParamEditorDelegate
• updateEntries() : DataTabBase , DIATreeTab , SpectraIDViewTab , SpectraTreeTab
• updateEntries_() : SpectraIDViewTab
• updateExclusionList_() : OfflinePrecursorIonSelection
• updateExistingParameter() : SiriusAdapterAlgorithm
• updateFeatureILPVariables() : PSLPFormulation
• updateFeatureVariant_() : ILPDCWrapper
• updateFilterBar() : TOPPViewBase
• updateFLASHDeconvParamFromWidgets_() : FLASHDeconvTabWidget
• updateFromFile() : SwathLibraryStats
• updateGridDimension_() : HashGrid< Cluster >
• updateHitRanks() : IDFilter
• updateHoveringEdgePos() : TOPPASScene
• updateHScrollbar() : PlotCanvas , PlotWidget
• updateIDReferences() : BaseFeature
• updateIntensityScale() : Plot3DOpenGLCanvas
• updateInternalList_() : FilterableList
• updateIonTypes_() : TheoreticalSpectrumGenerationDialog
• updateIsotopeMatrixFromStringList() : ItraqConstants
• updateIterativeWeightedMeanMZ() : MassTraceDetection
• updateLayer() : Plot1DCanvas , Plot2DCanvas , Plot3DCanvas , PlotCanvas
• updateLayerBar() : TOPPViewBase
• updateLogMzPeaks_() : FLASHDeconvAlgorithm
• updateMassBins_() : FLASHDeconvAlgorithm
• updateMaximum() : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
• updateMeanMZ() : MassTrace
• updateMedianMZ() : MassTrace
• updateMedianRT() : MassTrace
• updateMembers_() : AbsoluteQuantitation , AccurateMassSearchEngine , AScore , BaseModel< D > , BayesianProteinInferenceAlgorithm , BiGaussFitter1D , BiGaussModel , BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSumAgreeingIntensities , CompNovoIdentificationBase , CompNovoIdentificationCID , CompNovoIonScoringBase , ConsensusIDAlgorithm , ConsensusIDAlgorithmPEPIons , ConsensusIDAlgorithmPEPMatrix , DefaultParamHandler , DetectabilitySimulation , DiaPrescore , DIAScoring , EGHFitter1D , EGHModel , EGHTraceFitter , ElutionPeakDetection , EmgFitter1D , EmgGradientDescent , EmgModel , ExtendedIsotopeFitter1D , ExtendedIsotopeModel , FeatureDeconvolution , FeatureDistance , FeatureFinderAlgorithmIsotopeWavelet , FeatureFinderAlgorithmMetaboIdent , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , FeatureFinderIdentificationAlgorithm , FeatureFindingMetabo , FIAMSDataProcessor , Fitter1D , FLASHDeconvAlgorithm , GaussFilter , GaussFitter1D , GaussModel , GaussTraceFitter , ICPLLabeler , IDMapper , IDScoreSwitcherAlgorithm , IncludeExcludeTarget , InterpolationModel , IonizationSimulation , IsobaricChannelExtractor , IsobaricQuantifier , IsotopeFitter1D , IsotopeLabelingMDVs , IsotopeModel , ItraqEightPlexQuantitationMethod , ItraqFourPlexQuantitationMethod , ITRAQLabeler , KDTreeFeatureMaps , LevMarqFitter1D , LinearResampler , LinearResamplerAlign , LowessSmoothing , MapAlignmentAlgorithmKD , MapAlignmentAlgorithmPoseClustering , MapAlignmentAlgorithmSpectrumAlignment , MapAlignmentAlgorithmTreeGuided , MascotGenericFile , MascotRemoteQuery , MassDecompositionAlgorithm , MassFeatureTrace , MassTraceDetection , MaxLikeliFitter1D , MetaboliteFeatureDeconvolution , MetaboliteSpectralMatching , MRMDecoy , MRMFeatureFilter , MRMFeatureFinderScoring , MRMMapping , MRMTransitionGroupPicker , MSPGenericFile , MSSim , NLargest , Normalizer , NucleicAcidSpectrumGenerator , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , OptimizePeakDeconvolution , PeakIntegrator , PeakPickerCWT , PeakPickerHiRes , PeakPickerIterative , PeakPickerMRM , PeptideAndProteinQuant , PeptideIndexing , PrecursorIonSelection , PrecursorIonSelectionPreprocessing , ProductModel< 2 > , RawMSSignalSimulation , ReactionMonitoringTransition , RTSimulation , SavitzkyGolayFilter , SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container > , SILACLabeler , SimplePairFinder , SimpleSearchEngineAlgorithm , SimpleTSGXLMS , SONARScoring , SpectraMerger::SpectraDistance_ , SpectrumAnnotator , StablePairFinder , SvmTheoreticalSpectrumGenerator , SwathMapMassCorrection , TargetedSpectraExtractor , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS , TMTEighteenPlexQuantitationMethod , TMTElevenPlexQuantitationMethod , TMTSixPlexQuantitationMethod , TMTSixteenPlexQuantitationMethod , TMTTenPlexQuantitationMethod , TraceFitter , TransitionTSVFile , TwoDOptimization , XFDRAlgorithm
• updateMenu() : TOPPASBase , TOPPViewBase
• updateMetaValue() : MRMFeatureFilter
• updateMinElement() : DistanceMatrix< Value >
• updateMonoMassAndIsotopeIntensities() : PeakGroup
• updateMzBins_() : FLASHDeconvAlgorithm
• updateObjFunction_() : PSLPFormulation
• updateOutpuMap_() : IsobaricIsotopeCorrector
• updateOutputParamFromPerInputFile() : FLASHDeconvTabWidget
• updateOutputParamFromWidgets_() : FLASHDeconvTabWidget
• updatePeakGroupQvalues() : Qvalue
• updatePeptideHitAnnotations_() : LayerData1DPeak
• updatePerChargeCos_() : PeakGroup
• updatePerChargeInformation_() : PeakGroup
• updatePosition() : FuzzyStringComparator::InputLine
• updateProcessLog() : TOPPViewBase
• updateProteinEntries_() : SpectraIDViewTab
• updateProteinGroups() : IDFilter
• updateProteinReferences() : IDFilter
• updateProteinScores_() : BasicProteinInferenceAlgorithm
• updateQscore() : PeakGroup
• updateRange() : MRMFeatureFilter
• updateRanges() : ConsensusMap , FeatureMap , LayerData1DChrom , LayerData1DIonMobility , LayerData1DPeak , LayerDataBase , LayerDataChrom , LayerDataConsensus , LayerDataFeature , LayerDataIdent , LayerDataIonMobility , LayerDataPeak , Mobilogram , MSChromatogram , MSExperiment , MSSpectrum , RangeManagerContainer< RangeBases >
• updateRTConstraintsForSequentialILP() : PSLPFormulation
• updateScores() : PosteriorErrorProbabilityModel
• updateScrollbars_() : Plot1DCanvas , Plot2DCanvas , PlotCanvas
• updateSmoothedMaxRT() : MassTrace
• updateSmoothedWeightedMeanRT() : MassTrace
• updateSNR_() : PeakGroup
• updateStepSizeConstraint() : PSLPFormulation
• updateSwathParamFromWidgets_() : SwathTabWidget
• updateTabBar() : TOPPASBase
• updateToolBar() : TOPPASBase , TOPPViewBase
• updateTOPPOutputLog() : TOPPASBase
• updateTree_() : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• updateUniqueIdToIndex() : UniqueIdIndexer< T >
• updateViewBar() : TOPPViewBase
• updateViewMode_() : TOPPViewOpenDialog
• updateVisibleList_() : FilterableList
• updateVScrollbar() : PlotCanvas , PlotWidget
• updateWeightedMeanMZ() : MassTrace
• updateWeightedMeanRT() : MassTrace
• updateWeightedMZsd() : MassTrace
• updateWhiteMSExperiment_() : MultiplexFiltering
• updateWidgetsfromSwathParam_() : SwathTabWidget
• updateWindowTitle() : INIFileEditorWindow
• uploadProgress() : MascotRemoteQuery
• url() : ControlledVocabulary
• usage() : SysInfo::MemUsage
• usePPM() : CalibrationData
• userTime() : StopWatch::TimeDiff_