- w -

• waitForPluginParams() : TVToolDiscovery
• waitForToolParams() : TVToolDiscovery
• warning() : MzMLHandlerHelper , XMLHandler , XMLValidator
• wasChanged() : TOPPASScene
• water() : EmpiricalFormula
• weightData() : TransformationModel
• weightDatum() : TransformationModel
• weightedTICScore() : XQuestScores
• weightedTICScoreXQuest() : XQuestScores
• Weights() : Weights
• weightScore_() : MRMFeatureSelector , MRMFeatureSelector_test
• WeightWrapper() : WeightWrapper
• what_() : GlobalExceptionHandler
• wheelEvent() : PlotCanvas , TOPPASWidget
• widgetToData() : Plot1DCanvas
• widgetToData_() : PlotCanvas
• widgetToDataDistance() : Plot1DCanvas
• width() : DIntervalBase< D >
• window_() : TOPPASBase
• WindowDistance_() : InclusionExclusionList::WindowDistance_
• WindowMower() : WindowMower
• windowMower_() : CompNovoIdentificationBase
• withMinInt() : SiriusAdapterAlgorithm::ParameterModifier
• withValidStrings() : SiriusAdapterAlgorithm::ParameterModifier
• WizardGUILock() : WizardGUILock< TWidgetClass >
• wrap_() : XQuestResultXMLFile
• wrapSVM() : RTSimulation
• writable() : File
• write() : HiddenMarkovModel , SVOutStream , XTandemInfile
• writeArgumentsLog_() : XFDRAlgorithm
• writeAttributeIfExists_() : MzXMLHandler
• writeBinary_() : MzDataHandler
• writeBinaryDataArray_() : MzMLHandler
• writeBinaryFloatDataArray_() : MzMLHandler
• writeChromatogram_() : CachedMzMLHandler , MzMLHandler
• writeChromatograms() : MzMLSqliteHandler
• writeConfiguration_() : TraMLHandler
• writeContainerData_() : MzMLHandler
• writeCTD_() : TOPPBase
• writeCTDToStream() : ParamCTDFile
• writeCV_() : MzMLHandler
• writeCVList_() : TraMLHandler
• writeCVParams_() : MzQuantMLHandler , TraMLHandler
• writeCVS_() : MzDataHandler
• writeDataProcessing_() : MzMLHandler
• writeDebug_() : TOPPBase
• writeDebugOutput() : MultiplexFilteredMSExperiment
• writeDeconvolvedMasses() : FLASHDeconvSpectrumFile
• writeDeconvolvedMassesHeader() : FLASHDeconvSpectrumFile
• writeEnd() : FASTAFile
• writeEnzyme_() : MzIdentMLHandler
• writeExperiment() : MzMLSqliteHandler
• writeFeature_() : FeatureXMLHandler , MzQuantMLHandler
• writeFeatureDebugInfo_() : FeatureFinderAlgorithmPicked
• writeFeatures() : FLASHDeconvFeatureFile
• writeFooter_() : MzMLHandlerHelper
• writeFragmentAnnotations_() : IdXMLFile , MzIdentMLHandler
• writeFromPercolator() : OSWFile
• writeGraphMLFile() : HiddenMarkovModel
• writeHeader() : FLASHDeconvFeatureFile , OpenSwathOSWWriter , OpenSwathTSVWriter
• writeHeader_() : MzMLHandler , MascotGenericFile , MascotInfile
• writeHist() : PrecursorCorrection
• writeIniFile_() : DBSuitability
• writeLines() : OpenSwathOSWWriter , OpenSwathTSVWriter
• writeLog_() : FLASHDeconvTabWidget , SwathTabWidget
• writeLogError_() : TOPPBase
• writeLogInfo_() : TOPPBase
• writeLogWarn_() : TOPPBase
• writeMemdump() : CachedMzMLHandler
• writeMetadata() : CachedMzMLHandler
• writeMetadata_x() : CachedMzMLHandler
• writeMetaInfos_() : MzIdentMLHandler
• writeModifications_() : MascotGenericFile
• writeModParam_() : MzIdentMLHandler
• writeMSExperiment_() : MascotGenericFile , MascotInfile
• writeMsFile_() : SiriusMSFile
• writeMzIdentMLFile() : MzIdentMLDOMHandler
• writeNext() : FASTAFile
• writeNote_() : XTandemInfile
• writeOutFeaturesAndChroms_() : OpenSwathWorkflow
• writeParam_() : TOPPASToolVertex
• writeParameterHeader_() : MascotGenericFile , MascotInfile
• writeParametersToMetaValues() : DefaultParamHandler
• writePeakAnnotationsString_() : PeptideHit::PeakAnnotation
• writePeptideHeader_() : MzTabFile
• writePeptideHit() : MzIdentMLHandler
• writePeptideIdentification_() : ConsensusXMLHandler , FeatureXMLHandler
• writePQPOutput_() : TransitionPQPFile
• writePrecursor_() : MzMLHandler
• writeProblem() : LPWrapper
• writeProduct_() : MzMLHandler , TraMLHandler
• writePromexFeatures() : FLASHDeconvFeatureFile
• writePromexHeader() : FLASHDeconvFeatureFile
• writeProteinData_() : MzTabFile
• writeProteinHeader_() : MzTabFile
• writeResults_() : Ms2IdentificationRate
• writeRetentionTime_() : TraMLHandler
• writeRunLevelInformation() : MzMLSqliteHandler
• writeSoftware_() : MzMLHandler
• writeSourceFile_() : MzMLHandler
• writeSpectra() : MzMLSqliteHandler
• writeSpectrum() : MascotGenericFile
• writeSpectrum_() : CachedMzMLHandler , MzMLHandler , MascotInfile
• writeStart() : FASTAFile
• writeSupplementaryPairTable() : IonIdentityMolecularNetworking
• writeTarget_() : TraMLHandler
• writeTargets() : InclusionExclusionList
• writeTo() : ConsensusXMLHandler , FeatureXMLHandler , MzDataHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , PTMXMLHandler , ToolDescriptionHandler , TraMLHandler , XMLHandler , XQuestResultXMLHandler
• writeTo_() : XTandemInfile
• writeToFile() : TOPPASResource
• writeToFile_() : InclusionExclusionList
• writeToLogFile_() : TOPPASScene
• writeTopFD() : FLASHDeconvSpectrumFile
• writeTopFDFeatureHeader() : FLASHDeconvFeatureFile
• writeTopFDFeatures() : FLASHDeconvFeatureFile
• writeTrainingFile_() : SvmTheoreticalSpectrumGeneratorTrainer
• writeTSV() : ModificationsDB , ProteaseDB
• writeTSVOutput_() : TransitionTSVFile
• writeUserParam_() : MzDataHandler , MzMLHandler , MzXMLHandler , TraMLHandler , XMLHandler
• writeUserParams_() : MzQuantMLHandler , TraMLHandler
• writeValueOrNan() : SVOutStream
• writeWhitelistCases_() : FuzzyStringComparator
• writeXLMSPeptideHit() : MzIdentMLHandler
• writeXMLEscape() : XMLHandler
• writeXMLToStream() : ParamXMLFile
• writeXQuestXMLSpec() : XQuestResultXMLFile
• writeXvalResults() : SimpleSVM
• WrongParameterType() : WrongParameterType