| addLambda(Eigen::MatrixXd &matrix, double &lambda) | BALL::QSAR::Model | protected |
| backTransformPrediction(Eigen::VectorXd &pred) | BALL::QSAR::Model | protected |
| BayesModel(const QSARData &q) | BALL::QSAR::BayesModel | |
| calculateProbabilities(int activitiy_index, int feature_index, double feature_value) | BALL::QSAR::SNBModel | virtual |
| calculateStdErr() | BALL::QSAR::Model | inlinevirtual |
| ClassificationModel(const QSARData &q) | BALL::QSAR::ClassificationModel | |
| copyData(const Model &m) | BALL::QSAR::Model | |
| copyDescriptorIDs(const Model &m) | BALL::QSAR::Model | |
| data | BALL::QSAR::Model | |
| default_no_opt_steps_ | BALL::QSAR::Model | protected |
| deleteDescriptorIDs() | BALL::QSAR::Model | |
| descriptor_IDs_ | BALL::QSAR::Model | protected |
| descriptor_matrix_ | BALL::QSAR::Model | protected |
| descriptor_names_ | BALL::QSAR::Model | protected |
| descriptor_transformations_ | BALL::QSAR::Model | protected |
| discretizeFeatures | BALL::QSAR::ClassificationModel | protected |
| discretizeTestDataFeatures | BALL::QSAR::ClassificationModel | protected |
| equalSpaceDiscretization(unsigned int bins, Eigen::MatrixXd &discretization_information) | BALL::QSAR::ClassificationModel | protected |
| equalSpaceDiscretizationTestData(Eigen::VectorXd &compound, unsigned int bins, const Eigen::MatrixXd &discretization_information) | BALL::QSAR::ClassificationModel | protected |
| getClassLabels() | BALL::QSAR::ClassificationModel | |
| getDescriptorIDs() | BALL::QSAR::Model | |
| getDescriptorMatrix() | BALL::QSAR::Model | |
| getDescriptorNames() | BALL::QSAR::Model | |
| getDescriptorTransformations() | BALL::QSAR::Model | |
| getNoResponseVariables() | BALL::QSAR::SNBModel | virtual |
| getParameters() const | BALL::QSAR::SNBModel | virtual |
| getSubstanceNames() | BALL::QSAR::Model | |
| getSubstanceVector(const vector< double > &substance, bool transform) | BALL::QSAR::Model | protected |
| getSubstanceVector(const Eigen::VectorXd &substance, bool transform) | BALL::QSAR::Model | protected |
| getType() | BALL::QSAR::Model | |
| getUnnormalizedFeatureValue(int compound, int feature, double &return_value) | BALL::QSAR::Model | |
| getUnnormalizedResponseValue(int compound, int response, double &return_value) | BALL::QSAR::Model | |
| getY() | BALL::QSAR::Model | |
| getYTransformations() | BALL::QSAR::Model | |
| isTrained() | BALL::QSAR::SNBModel | virtual |
| labels_ | BALL::QSAR::ClassificationModel | protected |
| min_prob_diff_ | BALL::QSAR::BayesModel | protected |
| Model(const QSARData &q) | BALL::QSAR::Model | |
| model_val | BALL::QSAR::Model | |
| no_substances_ | BALL::QSAR::ClassificationModel | protected |
| operator=(ClassificationModel &m) | BALL::QSAR::ClassificationModel | virtual |
| BALL::QSAR::Model::operator=(const Model &m) | BALL::QSAR::Model | virtual |
| optimizeParameters(int, int) | BALL::QSAR::Model | inlinevirtual |
| optimizeParameters(int k) | BALL::QSAR::Model | |
| predict(const vector< double > &substance, bool transform=1) | BALL::QSAR::SNBModel | virtual |
| readClassInformationFromFile(std::ifstream &input, int no_classes) | BALL::QSAR::ClassificationModel | protected |
| readDescriptorInformation() | BALL::QSAR::Model | protected |
| readDescriptorInformationFromFile(std::ifstream &in, int no_descriptors, bool transformation) | BALL::QSAR::Model | protectedvirtual |
| readFromFile(string filename) | BALL::QSAR::SNBModel | virtual |
| readLabels() | BALL::QSAR::ClassificationModel | protected |
| readMatrix(Eigen::MatrixXd &mat, std::ifstream &in, unsigned int lines, unsigned int col) | BALL::QSAR::Model | protected |
| readModelParametersFromFile(std::ifstream &in) | BALL::QSAR::Model | protected |
| readResponseTransformationFromFile(std::ifstream &in, int no_y) | BALL::QSAR::Model | protected |
| readTrainingData() | BALL::QSAR::Model | |
| readVector(Eigen::RowVectorXd &vec, std::ifstream &in, unsigned int no_cells, bool column_vector) | BALL::QSAR::Model | protected |
| saveClassInformationToFile(std::ofstream &out) | BALL::QSAR::ClassificationModel | protected |
| saveDescriptorInformationToFile(std::ofstream &out) | BALL::QSAR::Model | protectedvirtual |
| saveModelParametersToFile(std::ofstream &out) | BALL::QSAR::Model | protected |
| saveResponseTransformationToFile(std::ofstream &out) | BALL::QSAR::Model | protected |
| saveToFile(string filename) | BALL::QSAR::SNBModel | virtual |
| setDataSource(const QSARData *q) | BALL::QSAR::Model | |
| setDescriptorIDs(const std::multiset< unsigned int > &sl) | BALL::QSAR::Model | |
| setParameters(vector< double > &v) | BALL::QSAR::SNBModel | virtual |
| SNBModel(const QSARData &q) | BALL::QSAR::SNBModel | |
| substance_names_ | BALL::QSAR::Model | protected |
| train() | BALL::QSAR::SNBModel | virtual |
| type_ | BALL::QSAR::Model | protected |
| undef_act_class_id_ | BALL::QSAR::BayesModel | protected |
| validation | BALL::QSAR::ClassificationModel | |
| Y_ | BALL::QSAR::Model | protected |
| y_transformations_ | BALL::QSAR::Model | protected |
| ~ClassificationModel() | BALL::QSAR::ClassificationModel | |
| ~Model() | BALL::QSAR::Model | virtual |
| ~SNBModel() | BALL::QSAR::SNBModel | |
1.8.7