BALL::Bond Member List

This is the complete list of members for BALL::Bond, including all inherited members.

AncestorConstIterator typedef (defined in BALL::Composite)	BALL::Composite
AncestorIterator typedef (defined in BALL::Composite)	BALL::Composite
AncestorIteratorTraits (defined in BALL::Composite)	BALL::Composite	[friend]
appendChild(Composite &composite)	BALL::Composite
apply(UnaryProcessor< T > &processor)	BALL::Composite
applyAncestor(UnaryProcessor< T > &processor)	BALL::Composite
applyChild(UnaryProcessor< T > &processor)	BALL::Composite
applyDescendant(UnaryProcessor< T > &processor)	BALL::Composite
applyDescendantPostorder(UnaryProcessor< T > &processor)	BALL::Composite
applyDescendantPreorder(UnaryProcessor< T > &processor)	BALL::Composite
applyLevel(UnaryProcessor< T > &processor, long level)	BALL::Composite
applyPostorder(UnaryProcessor< T > &processor)	BALL::Composite
applyPreorder(UnaryProcessor< T > &processor)	BALL::Composite
Atom (defined in BALL::Bond)	BALL::Bond	[friend]
AutoDeletable() (defined in BALL::AutoDeletable)	BALL::AutoDeletable	[protected]
AutoDeletable(const AutoDeletable &auto_deletable, bool deep=false) (defined in BALL::AutoDeletable)	BALL::AutoDeletable	[protected]
beginAncestor() (defined in BALL::Composite)	BALL::Composite
beginAncestor() const (defined in BALL::Composite)	BALL::Composite
beginChildComposite() (defined in BALL::Composite)	BALL::Composite
beginChildComposite() const (defined in BALL::Composite)	BALL::Composite
beginComposite() (defined in BALL::Composite)	BALL::Composite
beginComposite() const (defined in BALL::Composite)	BALL::Composite
Bond()	BALL::Bond
Bond(const Bond &bond, bool deep=true)	BALL::Bond
Bond(const String &name, Atom &first, Atom &second, Order order=BALL_BOND_DEFAULT_ORDER, Type type=BALL_BOND_DEFAULT_TYPE)	BALL::Bond
bond_order_ (defined in BALL::Bond)	BALL::Bond	[protected]
bond_type_ (defined in BALL::Bond)	BALL::Bond	[protected]
BondOrder enum name	BALL::Bond
BondType enum name	BALL::Bond
BOTH enum value (defined in BALL::Composite)	BALL::Composite
ChildCompositeConstIterator typedef (defined in BALL::Composite)	BALL::Composite
ChildCompositeConstReverseIterator typedef (defined in BALL::Composite)	BALL::Composite
ChildCompositeIterator typedef (defined in BALL::Composite)	BALL::Composite
ChildCompositeIteratorTraits (defined in BALL::Composite)	BALL::Composite	[friend]
ChildCompositeReverseIterator typedef (defined in BALL::Composite)	BALL::Composite
clear()	BALL::Bond	[virtual]
clearLastPtr() (defined in BALL::AutoDeletable)	BALL::AutoDeletable	[static]
clearProperty(Property property)	BALL::PropertyManager
clearProperty(const string &name)	BALL::PropertyManager
clone(Composite &root) const	BALL::Composite
compare(const Object &object) const	BALL::Object
Composite()	BALL::Composite
Composite(const Composite &composite, bool deep=true)	BALL::Composite
CompositeConstIterator typedef (defined in BALL::Composite)	BALL::Composite
CompositeConstReverseIterator typedef (defined in BALL::Composite)	BALL::Composite
CompositeIterator typedef (defined in BALL::Composite)	BALL::Composite
CompositeIteratorTraits (defined in BALL::Composite)	BALL::Composite	[friend]
CompositeReverseIterator typedef (defined in BALL::Composite)	BALL::Composite
containsSelection() const	BALL::Composite
count(const KernelPredicateType &predicate) const	BALL::Composite
countDescendants() const	BALL::Composite
countNamedProperties() const	BALL::PropertyManager
countProperties() const	BALL::PropertyManager
createBond(Bond &bond, Atom &first, Atom &second)	BALL::Bond	[static]
DEFAULT_PROCESSOR (defined in BALL::Composite)	BALL::Composite	[static]
DEFAULT_UNARY_PREDICATE (defined in BALL::Composite)	BALL::Composite	[static]
deleteChildrenList_(std::list< Composite * > &composites) (defined in BALL::Composite)	BALL::Composite
deselect()	BALL::Composite	[virtual]
destroy()	BALL::Bond	[virtual]
BALL::Composite::destroy(bool virtual_destroy)	BALL::Composite
dump(std::ostream &s=std::cout, Size depth=0) const	BALL::Bond	[virtual]
dump(::std::ostream &s=std::cout, Size depth=0) const (defined in BALL::Object)	BALL::Object	[virtual]
dump(::std::ostream &s=std::cout, Size depth=0) const (defined in BALL::Selectable)	BALL::Selectable	[virtual]
endAncestor() (defined in BALL::Composite)	BALL::Composite
endAncestor() const (defined in BALL::Composite)	BALL::Composite
endChildComposite() (defined in BALL::Composite)	BALL::Composite
endChildComposite() const (defined in BALL::Composite)	BALL::Composite
endComposite() (defined in BALL::Composite)	BALL::Composite
endComposite() const (defined in BALL::Composite)	BALL::Composite
finalize()	BALL::Bond	[virtual]
first_ (defined in BALL::Bond)	BALL::Bond	[protected]
BALL::get(Composite &composite, bool deep=true) const	BALL::Composite
BALL::Selectable::get(Selectable &selectable, bool deep=true) const	BALL::Selectable
BALL::PropertyManager::get(PropertyManager &property_manager) const	BALL::PropertyManager
getAncestor(const T &)	BALL::Composite
getAncestor(const T &) const	BALL::Composite
getBitVector()	BALL::PropertyManager
getBitVector() const	BALL::PropertyManager
getBoundAtom(const Atom &atom) const	BALL::Bond
getBoundAtom(const Atom &atom)	BALL::Bond
getChild(Index index)	BALL::Composite
getChild(Index index) const	BALL::Composite
getDegree() const	BALL::Composite
getDepth() const	BALL::Composite
getFirstAtom() const	BALL::Bond
getFirstChild()	BALL::Composite
getFirstChild() const	BALL::Composite
getHandle() const	BALL::Object
getHeight() const	BALL::Composite
getLastChild()	BALL::Composite
getLastChild() const	BALL::Composite
getLength() const	BALL::Bond
getLowestCommonAncestor(const Composite &composite)	BALL::Composite
getLowestCommonAncestor(const Composite &composite) const	BALL::Composite
getModificationTime() const	BALL::Composite
getName() const	BALL::Bond
getNamedProperty(Position index) const	BALL::PropertyManager
getNamedProperty(Position index)	BALL::PropertyManager
getNewHandle()	BALL::Object	[static]
getNext(const T &)	BALL::Composite
getNext(const T &dummy) const	BALL::Composite
getNextHandle()	BALL::Object	[static]
getOrder() const	BALL::Bond
getParent()	BALL::Composite
getParent() const	BALL::Composite
getPartner(const Atom &atom) const	BALL::Bond
getPathLength(const Composite &composite) const	BALL::Composite
getPrevious(const T &)	BALL::Composite
getPrevious(const T &dummy) const	BALL::Composite
getProperty(const string &name) const	BALL::PropertyManager
getRoot()	BALL::Composite
getRoot() const	BALL::Composite
getSecondAtom() const	BALL::Bond
getSelectionTime() const	BALL::Composite
getSibling(Index index)	BALL::Composite
getSibling(Index index) const	BALL::Composite
getType() const	BALL::Bond
hasAncestor(const T &dummy) const	BALL::Composite
hasChild() const	BALL::Composite
hasNextSibling() const	BALL::Composite
hasParent() const	BALL::Composite
hasPreviousSibling() const	BALL::Composite
hasProperty(Property property) const	BALL::PropertyManager
hasProperty(const string &name) const	BALL::PropertyManager
hasSibling() const	BALL::Composite
host(Visitor< Composite > &visitor)	BALL::Composite
insertAfter(Composite &composite)	BALL::Composite
insertBefore(Composite &composite)	BALL::Composite
insertParent(Composite &parent, Composite &first, Composite &last, bool destroy_parent=true)	BALL::Composite	[static]
IS_AROMATIC enum value	BALL::Bond
isAncestorOf(const Composite &composite) const	BALL::Composite
isAromatic() const	BALL::Bond
isAutoDeletable() const	BALL::AutoDeletable
isBondOf(const Atom &atom) const	BALL::Bond
isBound() const	BALL::Bond
isChildOf(const Composite &composite) const	BALL::Composite
isDescendantOf(const Composite &composite) const	BALL::Composite
isEmpty() const	BALL::Composite
isFirstChild() const	BALL::Composite
isFirstChildOf(const Composite &composite) const	BALL::Composite
isHomomorph(const Composite &composite) const	BALL::Composite
isInterBond() const	BALL::Bond
isInterBondOf(const AtomContainer &atom_container) const	BALL::Bond
isInterior() const	BALL::Composite
isIntraBond() const	BALL::Bond
isIntraBondOf(const AtomContainer &atom_container) const	BALL::Bond
isLastChild() const	BALL::Composite
isLastChildOf(const Composite &composite) const	BALL::Composite
isNextSiblingOf(const Composite &composite) const	BALL::Composite
isParentOf(const Composite &composite) const	BALL::Composite
isPreviousSiblingOf(const Composite &composite) const	BALL::Composite
isRelatedWith(const Composite &composite) const	BALL::Composite
isRoot() const	BALL::Composite
isRootOf(const Composite &composite) const	BALL::Composite
isSelected() const	BALL::Selectable
isSiblingOf(const Composite &composite) const	BALL::Composite
isValid() const	BALL::Bond	[virtual]
KernelPredicateType typedef	BALL::Composite
MODIFICATION enum value (defined in BALL::Composite)	BALL::Composite
name_ (defined in BALL::Bond)	BALL::Bond	[protected]
NUMBER_OF_BOND_ORDERS enum value	BALL::Bond
NUMBER_OF_BOND_TYPES enum value (defined in BALL::Bond)	BALL::Bond
NUMBER_OF_PROPERTIES enum value (defined in BALL::Bond)	BALL::Bond
Object()	BALL::Object
Object(const Object &object)	BALL::Object
operator BitVector &()	BALL::PropertyManager
operator delete(void *ptr)	BALL::AutoDeletable
operator delete(void *ptr, void *)	BALL::AutoDeletable
operator new(size_t size)	BALL::AutoDeletable
operator new(size_t size, void *ptr)	BALL::AutoDeletable
operator!=(const Bond &bond) const	BALL::Bond
BALL::Composite::operator!=(const Composite &composite) const	BALL::Composite
BALL::PersistentObject::operator!=(const Object &object) const	BALL::Object
BALL::Selectable::operator!=(const Selectable &selectable) const	BALL::Selectable
BALL::PropertyManager::operator!=(const PropertyManager &pm) const	BALL::PropertyManager
operator<(const Object &object) const	BALL::Object
operator<=(const Object &object) const	BALL::Object
operator=(const Bond &bond)	BALL::Bond
BALL::Composite::operator=(const Composite &composite)	BALL::Composite
BALL::PersistentObject::operator=(const Object &)	BALL::Object
BALL::Selectable::operator=(const Selectable &selectable)	BALL::Selectable
BALL::PropertyManager::operator=(const PropertyManager &property_manager)	BALL::PropertyManager
operator==(const Bond &bond) const	BALL::Bond
BALL::Composite::operator==(const Composite &composite) const	BALL::Composite
BALL::PersistentObject::operator==(const Object &object) const	BALL::Object
BALL::Selectable::operator==(const Selectable &selectable) const	BALL::Selectable
BALL::PropertyManager::operator==(const PropertyManager &pm) const	BALL::PropertyManager
operator>(const Object &object) const	BALL::Object
operator>=(const Object &object) const	BALL::Object
operator>>(PersistenceManager &pm) const	BALL::PersistentObject
Order typedef	BALL::Bond
ORDER__ANY enum value	BALL::Bond
ORDER__AROMATIC enum value	BALL::Bond
ORDER__DOUBLE enum value	BALL::Bond
ORDER__QUADRUPLE enum value	BALL::Bond
ORDER__SINGLE enum value	BALL::Bond
ORDER__TRIPLE enum value	BALL::Bond
ORDER__UNKNOWN enum value	BALL::Bond
PersistentObject()	BALL::PersistentObject
persistentRead(PersistenceManager &pm)	BALL::Bond	[virtual]
persistentWrite(PersistenceManager &pm, const char *name=0) const	BALL::Bond	[virtual]
prependChild(Composite &composite)	BALL::Composite
Property enum name	BALL::Bond
PropertyManager()	BALL::PropertyManager
PropertyManager(const PropertyManager &property_manager)	BALL::PropertyManager
rbeginChildComposite() (defined in BALL::Composite)	BALL::Composite
rbeginChildComposite() const (defined in BALL::Composite)	BALL::Composite
rbeginComposite() (defined in BALL::Composite)	BALL::Composite
rbeginComposite() const (defined in BALL::Composite)	BALL::Composite
BALL::read(PersistenceManager &pm)	BALL::Selectable
BALL::PropertyManager::read(PersistenceManager &pm)	BALL::PropertyManager
removeChild(Composite &child)	BALL::Composite
removeSelected()	BALL::Composite
removeUnselected()	BALL::Composite
rendChildComposite() (defined in BALL::Composite)	BALL::Composite
rendChildComposite() const (defined in BALL::Composite)	BALL::Composite
rendComposite() (defined in BALL::Composite)	BALL::Composite
rendComposite() const (defined in BALL::Composite)	BALL::Composite
replace(Composite &composite)	BALL::Composite
second_ (defined in BALL::Bond)	BALL::Bond	[protected]
select()	BALL::Composite	[virtual]
Selectable()	BALL::Selectable
Selectable(const Selectable &selectable, bool deep=true)	BALL::Selectable
selected_ (defined in BALL::Selectable)	BALL::Selectable	[protected]
SELECTION enum value (defined in BALL::Composite)	BALL::Composite
BALL::set(const Composite &composite, bool deep=true)	BALL::Composite
BALL::Selectable::set(const Selectable &selectable, bool deep=true)	BALL::Selectable
BALL::PropertyManager::set(const PropertyManager &property_manager)	BALL::PropertyManager
setAutoDeletable(bool enable)	BALL::AutoDeletable
setFirstAtom(Atom *atom)	BALL::Bond
setName(const String &name)	BALL::Bond
setOrder(Order bond_order)	BALL::Bond
setProperty(Property property)	BALL::PropertyManager
setProperty(const NamedProperty &property)	BALL::PropertyManager
setProperty(const string &name)	BALL::PropertyManager
setProperty(const string &name, bool value)	BALL::PropertyManager
setProperty(const string &name, int value)	BALL::PropertyManager
setProperty(const string &name, unsigned int value)	BALL::PropertyManager
setProperty(const string &name, float value)	BALL::PropertyManager
setProperty(const string &name, double value)	BALL::PropertyManager
setProperty(const string &name, const string &value)	BALL::PropertyManager
setProperty(const string &name, const PersistentObject &value)	BALL::PropertyManager
setSecondAtom(Atom *atom)	BALL::Bond
setSelected(bool selected)	BALL::Selectable	[virtual]
setType(Type bond_type)	BALL::Bond
splice(Composite &composite)	BALL::Composite
spliceAfter(Composite &composite)	BALL::Composite
spliceBefore(Composite &composite)	BALL::Composite
stamp(StampType stamp=BOTH)	BALL::Composite
StampType enum name	BALL::Composite
swap(Bond &bond)	BALL::Bond
BALL::Composite::swap(Composite &composite)	BALL::Composite
BALL::Selectable::swap(Selectable &selectable)	BALL::Selectable
BALL::PropertyManager::swap(PropertyManager &property_manager)	BALL::PropertyManager
toggleProperty(Property property)	BALL::PropertyManager
Type typedef (defined in BALL::Bond)	BALL::Bond
TYPE__COVALENT enum value (defined in BALL::Bond)	BALL::Bond
TYPE__DISULPHIDE_BRIDGE enum value (defined in BALL::Bond)	BALL::Bond
TYPE__HYDROGEN enum value (defined in BALL::Bond)	BALL::Bond
TYPE__PEPTIDE enum value (defined in BALL::Bond)	BALL::Bond
TYPE__SALT_BRIDGE enum value (defined in BALL::Bond)	BALL::Bond
TYPE__UNKNOWN enum value (defined in BALL::Bond)	BALL::Bond
BALL::write(PersistenceManager &pm) const	BALL::Selectable
BALL::PropertyManager::write(PersistenceManager &pm) const	BALL::PropertyManager
~AutoDeletable()	BALL::AutoDeletable	[virtual]
~Bond()	BALL::Bond	[virtual]
~Composite()	BALL::Composite	[virtual]
~Object()	BALL::Object	[virtual]
~PersistentObject()	BALL::PersistentObject	[virtual]
~PropertyManager()	BALL::PropertyManager	[virtual]
~Selectable()	BALL::Selectable	[virtual]