a_i_ |
BALL::ConjugateGradientMinimizer |
[protected] |
abort_by_energy_enabled_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
abort_energy_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
aborted_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
b_i_ |
BALL::ConjugateGradientMinimizer |
[protected] |
ConjugateGradientMinimizer() |
BALL::ConjugateGradientMinimizer |
|
ConjugateGradientMinimizer(ForceField
&force_field) |
BALL::ConjugateGradientMinimizer |
|
ConjugateGradientMinimizer(ForceField &force_field,
SnapShotManager *ssm) |
BALL::ConjugateGradientMinimizer |
|
ConjugateGradientMinimizer(ForceField &force_field,
SnapShotManager *ssm, const Options &options) |
BALL::ConjugateGradientMinimizer |
|
ConjugateGradientMinimizer(ForceField &force_field,
const Options &options) |
BALL::ConjugateGradientMinimizer |
|
ConjugateGradientMinimizer(const
ConjugateGradientMinimizer &rhs) |
BALL::ConjugateGradientMinimizer |
|
current_energy_ |
BALL::EnergyMinimizer |
[protected] |
current_grad_ |
BALL::EnergyMinimizer |
[protected] |
cutlo_ |
BALL::EnergyMinimizer |
[protected] |
D_1_ |
BALL::ConjugateGradientMinimizer |
[protected] |
D_4_ |
BALL::ConjugateGradientMinimizer |
[protected] |
direction_ |
BALL::EnergyMinimizer |
[protected] |
enableEnergyAbortCondition(bool state) |
BALL::EnergyMinimizer |
|
energy_difference_bound_ |
BALL::EnergyMinimizer |
[protected] |
energy_output_frequency_ |
BALL::EnergyMinimizer |
[protected] |
energy_update_counter_ |
BALL::EnergyMinimizer |
[protected] |
energyAbortConditionEnabled() const |
BALL::EnergyMinimizer |
|
EnergyMinimizer() |
BALL::EnergyMinimizer |
|
EnergyMinimizer(ForceField &force_field) |
BALL::EnergyMinimizer |
|
EnergyMinimizer(ForceField &force_field, const
Options &options) |
BALL::EnergyMinimizer |
|
EnergyMinimizer(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
findStep() |
BALL::ConjugateGradientMinimizer |
[virtual] |
finishIteration() |
BALL::EnergyMinimizer |
[virtual] |
first_iter_ |
BALL::ConjugateGradientMinimizer |
[protected] |
FLETCHER_REEVES enum value |
BALL::ConjugateGradientMinimizer |
|
force_field_ |
BALL::EnergyMinimizer |
[protected] |
force_update_counter_ |
BALL::EnergyMinimizer |
[protected] |
getDirection() |
BALL::EnergyMinimizer |
|
getEnergy() const |
BALL::EnergyMinimizer |
|
getEnergy() |
BALL::EnergyMinimizer |
|
getEnergyDifferenceBound() const |
BALL::EnergyMinimizer |
|
getEnergyOutputFrequency() const |
BALL::EnergyMinimizer |
|
getEnergyToAbort() const (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
|
getEnergyUpdateCounter() const |
BALL::EnergyMinimizer |
|
getForceField() |
BALL::EnergyMinimizer |
|
getForceUpdateCounter() const |
BALL::EnergyMinimizer |
|
getGradient() |
BALL::EnergyMinimizer |
|
getInitialEnergy() const |
BALL::EnergyMinimizer |
|
getInitialEnergy() |
BALL::EnergyMinimizer |
|
getInitialGradient() |
BALL::EnergyMinimizer |
|
getMaxGradient() const |
BALL::EnergyMinimizer |
|
getMaximumDisplacement() const |
BALL::EnergyMinimizer |
|
getMaxNumberOfIterations() const |
BALL::EnergyMinimizer |
|
getMaxSameEnergy() const |
BALL::EnergyMinimizer |
|
getNumberOfIterations() const |
BALL::EnergyMinimizer |
|
getSnapShotFrequency() const |
BALL::EnergyMinimizer |
|
getUpdateMethod() const |
BALL::ConjugateGradientMinimizer |
|
initial_energy_ |
BALL::EnergyMinimizer |
[protected] |
initial_grad_ |
BALL::EnergyMinimizer |
[protected] |
isConverged() const |
BALL::EnergyMinimizer |
[virtual] |
isValid() const |
BALL::EnergyMinimizer |
|
last_restart_iter_ |
BALL::ConjugateGradientMinimizer |
[protected] |
line_search_ |
BALL::ConjugateGradientMinimizer |
[protected] |
max_gradient_ |
BALL::EnergyMinimizer |
[protected] |
max_same_energy_ |
BALL::EnergyMinimizer |
[protected] |
maximal_number_of_iterations_ |
BALL::EnergyMinimizer |
[protected] |
maximum_displacement_ |
BALL::EnergyMinimizer |
[protected] |
minimize(Size iterations=0, bool resume=false) |
BALL::ConjugateGradientMinimizer |
[virtual] |
number_of_atoms_ |
BALL::ConjugateGradientMinimizer |
[protected] |
number_of_iterations_ |
BALL::EnergyMinimizer |
[protected] |
old_energy_ |
BALL::EnergyMinimizer |
[protected] |
old_grad_ |
BALL::EnergyMinimizer |
[protected] |
old_gtg_ |
BALL::ConjugateGradientMinimizer |
[protected] |
operator=(const ConjugateGradientMinimizer
&rhs) |
BALL::ConjugateGradientMinimizer |
|
BALL::EnergyMinimizer::operator=(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
operator==(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
options |
BALL::EnergyMinimizer |
|
p_i_ |
BALL::ConjugateGradientMinimizer |
[protected] |
p_t_ |
BALL::ConjugateGradientMinimizer |
[protected] |
POLAK_RIBIERE enum value |
BALL::ConjugateGradientMinimizer |
|
printEnergy() const |
BALL::EnergyMinimizer |
[virtual] |
restart_frequency_ |
BALL::ConjugateGradientMinimizer |
[protected] |
same_energy_counter_ |
BALL::EnergyMinimizer |
[protected] |
setEnergyDifferenceBound(float
energy_difference_bound) |
BALL::EnergyMinimizer |
|
setEnergyOutputFrequency(Size
energy_output_frequency) |
BALL::EnergyMinimizer |
|
setEnergyToAbort(float value) |
BALL::EnergyMinimizer |
|
setMaxGradient(float max_gradient) |
BALL::EnergyMinimizer |
|
setMaximumDisplacement(float maximum_displacement) |
BALL::EnergyMinimizer |
|
setMaxNumberOfIterations(Size
number_of_iterations) |
BALL::EnergyMinimizer |
|
setMaxSameEnergy(Size number) |
BALL::EnergyMinimizer |
|
setNumberOfIterations(Size number_of_iterations) |
BALL::EnergyMinimizer |
|
setSnapShotFrequency(Size snapshot_frequency) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, SnapShotManager
*ssm) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, SnapShotManager
*ssm, const Options &options) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, const Options
&options) |
BALL::EnergyMinimizer |
|
setUpdateMethod(UpdateMethod method) |
BALL::ConjugateGradientMinimizer |
|
SHANNO enum value |
BALL::ConjugateGradientMinimizer |
|
snapshot_ |
BALL::EnergyMinimizer |
[protected] |
snapshot_frequency_ |
BALL::EnergyMinimizer |
[protected] |
specificSetup() |
BALL::ConjugateGradientMinimizer |
[virtual] |
step_ |
BALL::EnergyMinimizer |
[protected] |
storeGradientEnergy() |
BALL::EnergyMinimizer |
|
takeSnapShot() const |
BALL::EnergyMinimizer |
[virtual] |
unscaled_direction_ |
BALL::ConjugateGradientMinimizer |
[protected] |
updateDirection() |
BALL::ConjugateGradientMinimizer |
[virtual] |
updateEnergy() |
BALL::EnergyMinimizer |
[virtual] |
updateForces() |
BALL::EnergyMinimizer |
[virtual] |
UpdateMethod enum name |
BALL::ConjugateGradientMinimizer |
|
updt_method_ |
BALL::ConjugateGradientMinimizer |
[protected] |
valid_ |
BALL::EnergyMinimizer |
[protected] |
wasAborted() const |
BALL::EnergyMinimizer |
|
y_i_ |
BALL::ConjugateGradientMinimizer |
[protected] |
y_t_ |
BALL::ConjugateGradientMinimizer |
[protected] |
~ConjugateGradientMinimizer() |
BALL::ConjugateGradientMinimizer |
[virtual] |
~EnergyMinimizer() |
BALL::EnergyMinimizer |
[virtual] |