| abort() (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| abort_ (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[protected] |
| calcConjugate_(ProteinIndex pro_idx) (defined in
BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| changeProteinOrientation_(System &system,
Vector3 euler_ang) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| CONNOLLY enum value (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| current_round_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| destroy_() (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| doPreTranslation_(ProteinIndex pro_idx) (defined
in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_a_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_b_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_lower_coord_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_lower_index_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_origin_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_size_index_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_upper_coord_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFT_grid_upper_index_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FFTGridMulti_() (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| findConnollySurfacePoints_(System &system,
ProteinIndex pro_idx) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| findFTDockInsidePoints_(System &system,
ProteinIndex pro_idx) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| findFTDockSurfacePoints_(System &system,
ProteinIndex pro_idx) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| findInsidePoints_(System &system,
ProteinIndex pro_idx) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| findVanDerWaalsSurfacePoints_(System
&system, ProteinIndex pro_idx) (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| FTDOCK enum value (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| GeometricFit() (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
|
GeometricFit(System &system1, System
&system2) |
BALL::GeometricFit |
|
|
GeometricFit(Options &new_options) |
BALL::GeometricFit |
|
|
GeometricFit(System &system1, System &system2,
Options &new_options) |
BALL::GeometricFit |
|
|
getConformationSet(Index total_number=0) |
BALL::GeometricFit |
[virtual] |
| getGlobalPeak_(Peak_ *peak_list) (defined in
BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
|
getMassCenter_(System &system) |
BALL::GeometricFit |
[protected] |
|
getOrientation(Index con_num) const |
BALL::GeometricFit |
|
| getProgress() const (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[virtual] |
|
getRadius_(System &system) |
BALL::GeometricFit |
[protected] |
| getSeparation_(const Vector3 &mat_pos)
(defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
|
getTranslation(Index con_num) const |
BALL::GeometricFit |
|
| getTranslation_(const Vector3 &mat_pos)
(defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| hasFinished() const (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[virtual] |
|
initFFTGrid_(ProteinIndex pro_idx) |
BALL::GeometricFit |
[protected] |
| initGridSizes_() (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| makeFFTGrid_(ProteinIndex pro_idx) (defined in
BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
|
optimizeGridSize_(int raw_size) |
BALL::GeometricFit |
[protected] |
|
options |
BALL::GeometricFit |
|
| orientations_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| pause() (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| pause_ (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[protected] |
| peak_set_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| pre_translation_a_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| pre_translation_b_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| proceed() (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| PROTEIN_A enum value (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| PROTEIN_B enum value (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| ProteinIndex enum name (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| radius_a_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| radius_b_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
|
setup(System &system1, System &system2, Options
&new_options) |
BALL::GeometricFit |
[virtual] |
|
setup(System &system1, System &system2) |
BALL::GeometricFit |
[virtual] |
|
start() |
BALL::GeometricFit |
[virtual] |
| SurfaceType enum name (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| system1_ (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[protected] |
| system2_ (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[protected] |
| system_backup_a_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| system_backup_b_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| total_round_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| translations_ (defined in BALL::GeometricFit) |
BALL::GeometricFit |
[protected] |
| VAN_DER_WAALS enum value (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
| wasAborted() const (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| wasPaused() const (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| ~DockingAlgorithm() (defined in BALL::DockingAlgorithm) |
BALL::DockingAlgorithm |
[virtual] |
| ~GeometricFit() (defined in BALL::GeometricFit) |
BALL::GeometricFit |
|
