|
atom_format_ |
BALL::MOLFile |
[protected, static] |
|
bond_format_ |
BALL::MOLFile |
[protected, static] |
|
clear() |
BALL::LineBasedFile |
[virtual] |
| close() |
BALL::File |
|
| copy(String
source_name, String destination_name, Size
buffer_size=4096) |
BALL::File |
[static] |
| copyTo(const
String &destination_name, Size buffer_size=4096) |
BALL::File |
|
|
counts_format_ |
BALL::MOLFile |
[protected, static] |
| createTemporaryFilename(String
&temporary) |
BALL::File |
[static] |
|
disableAtoms() |
BALL::SDFile |
|
| disableTransformation(Transformation
transformation) (defined in BALL::File) |
BALL::File |
[static] |
|
enableAtoms() |
BALL::SDFile |
|
| enableTransformation(Transformation
transformation) (defined in BALL::File) |
BALL::File |
[static] |
|
enableTrimWhitespaces(bool state) |
BALL::LineBasedFile |
|
| File() |
BALL::File |
|
| File(const
String &name, OpenMode open_mode=std::ios::in) |
BALL::File |
|
| File(const
File &file) |
BALL::File |
|
|
GenericMolFile() |
BALL::GenericMolFile |
|
|
GenericMolFile(const String &filename,
File::OpenMode open_mode=std::ios::in) |
BALL::GenericMolFile |
|
|
GenericMolFile(const GenericMolFile &file) |
BALL::GenericMolFile |
|
|
getField(Index pos=0, const String "es="",
const String
&delimiters=String::CHARACTER_CLASS__WHITESPACE)
const |
BALL::LineBasedFile |
|
| getFileStream() |
BALL::File |
|
|
getLine() const |
BALL::LineBasedFile |
|
|
getLine() |
BALL::LineBasedFile |
|
|
getLineNumber() const |
BALL::LineBasedFile |
|
| getName()
const |
BALL::File |
|
| getOpenMode()
const |
BALL::File |
|
| getOriginalName() const (defined in BALL::File) |
BALL::File |
|
| getSize() |
BALL::File |
|
| getSize(String
name) |
BALL::File |
[static] |
| getTransformationManager() |
BALL::File |
|
| getTransformationManager()
const |
BALL::File |
|
| getType(String
name, bool trace_link) |
BALL::File |
[static] |
| getType(bool
trace_link) const |
BALL::File |
|
|
gotoLine(Position line_number) |
BALL::LineBasedFile |
|
|
has(const String &text) const |
BALL::LineBasedFile |
|
|
initRead_() |
BALL::GenericMolFile |
[protected, virtual] |
|
initWrite_() |
BALL::GenericMolFile |
[protected, virtual] |
| is_open_ (defined in BALL::File) |
BALL::File |
[protected] |
| is_temporary_ (defined in BALL::File) |
BALL::File |
[protected] |
| isAccessible(String
name) |
BALL::File |
[static] |
| isAccessible()
const |
BALL::File |
|
| isCanonized()
const |
BALL::File |
|
| isClosed()
const |
BALL::File |
|
| isExecutable(String
name) |
BALL::File |
[static] |
| isExecutable()
const |
BALL::File |
|
| isOpen()
const |
BALL::File |
|
| isReadable(String
name) |
BALL::File |
[static] |
| isReadable()
const |
BALL::File |
|
| isTransformationEnabled(Transformation
transformation) (defined in BALL::File) |
BALL::File |
[static] |
| isValid()
const |
BALL::File |
|
| isWritable(String
name) |
BALL::File |
[static] |
| isWritable()
const |
BALL::File |
|
|
line_ |
BALL::LineBasedFile |
[protected] |
|
line_number_ |
BALL::LineBasedFile |
[protected] |
|
LineBasedFile() |
BALL::LineBasedFile |
|
|
LineBasedFile(const String &filename,
File::OpenMode open_mode=std::ios::in, bool
trim_whitespaces=false) |
BALL::LineBasedFile |
|
|
LineBasedFile(const LineBasedFile &f) |
BALL::LineBasedFile |
|
| MODE_APP |
BALL::File |
[static] |
| MODE_ATE |
BALL::File |
[static] |
| MODE_BINARY |
BALL::File |
[static] |
| MODE_IN |
BALL::File |
[static] |
| MODE_OUT |
BALL::File |
[static] |
| MODE_TRUNC |
BALL::File |
[static] |
|
MOLFile() |
BALL::MOLFile |
|
|
MOLFile(const String &filename, File::OpenMode
open_mode=std::ios::in) |
BALL::MOLFile |
|
|
MOLFile(const MOLFile &file) |
BALL::MOLFile |
|
| move(const
String &source_name, const String
&destination_name) |
BALL::File |
[static] |
| moveTo(const
String &destination_name) |
BALL::File |
|
| name_ (defined in BALL::File) |
BALL::File |
[protected] |
| open(const
String &name, File::OpenMode
open_mode=std::ios::in) |
BALL::File |
|
| open_mode_ (defined in BALL::File) |
BALL::File |
[protected] |
| OpenMode
typedef |
BALL::File |
|
|
operator!=(const LineBasedFile &f) |
BALL::LineBasedFile |
|
| BALL::File::operator!=(const
File &file) const |
BALL::File |
|
|
operator<<(const System &system) |
BALL::GenericMolFile |
[virtual] |
|
operator<<(const Molecule &molecule) |
BALL::GenericMolFile |
[virtual] |
| operator=(const SDFile &file) (defined in
BALL::SDFile) |
BALL::SDFile |
|
| operator=(const MOLFile &file) (defined in
BALL::MOLFile) |
BALL::MOLFile |
|
|
BALL::GenericMolFile::operator=(const GenericMolFile
&rhs) |
BALL::GenericMolFile |
|
|
BALL::LineBasedFile::operator=(const LineBasedFile
&file) |
BALL::LineBasedFile |
|
| BALL::File::operator=(const
File &file) |
BALL::File |
|
|
operator==(const LineBasedFile &f) |
BALL::LineBasedFile |
|
| BALL::File::operator==(const
File &file) const |
BALL::File |
|
|
operator>>(System &system) |
BALL::GenericMolFile |
[virtual] |
|
operator>>(Molecule &molecule) |
BALL::GenericMolFile |
[virtual] |
| original_name_ (defined in BALL::File) |
BALL::File |
[protected] |
|
parseColumnFormat(const char *format, Position index,
Size length, void *arg) |
BALL::LineBasedFile |
|
|
read(System &system) |
BALL::SDFile |
[virtual] |
|
read() |
BALL::SDFile |
[virtual] |
|
read_atoms_ |
BALL::SDFile |
[protected] |
|
readAtomLine_(AtomStruct &atom) |
BALL::MOLFile |
[protected] |
|
readBondLine_(BondStruct &bond) |
BALL::MOLFile |
[protected] |
|
readCountsLine_(CountsStruct &counts) |
BALL::MOLFile |
[protected] |
|
readCTAB_(std::vector< Atom * >
&atom_map) |
BALL::MOLFile |
[protected] |
|
readLine() |
BALL::LineBasedFile |
|
|
readPropertyBlock_(Molecule &molecule) |
BALL::SDFile |
[protected] |
| registerTransformation(const String
&pattern, const String &exec) (defined in BALL::File) |
BALL::File |
[static] |
| remove(String
name) |
BALL::File |
[static] |
| remove() |
BALL::File |
|
| rename(String
old_path, String new_path) |
BALL::File |
[static] |
| renameTo(const
String &new_path) |
BALL::File |
|
| reopen() |
BALL::File |
|
| reopen(File::OpenMode
open_mode) |
BALL::File |
|
|
rewind() |
BALL::LineBasedFile |
|
|
SDFile() |
BALL::SDFile |
|
|
SDFile(const String &filename, File::OpenMode
open_mode=std::ios::in) |
BALL::SDFile |
|
|
SDFile(const SDFile &file) |
BALL::SDFile |
|
|
search(const String &text, bool
return_to_start=false) |
BALL::LineBasedFile |
|
| search(const String &text, const String
&stop, bool return_to_start=false) (defined in
BALL::LineBasedFile) |
BALL::LineBasedFile |
|
| setName(const
String &name) |
BALL::File |
|
|
skipLines(Size number=1) |
BALL::LineBasedFile |
|
|
startsWith(const String &text) const |
BALL::LineBasedFile |
|
|
switchString(const std::vector< String >
&data) const |
BALL::LineBasedFile |
|
|
test(const char *file, int line, bool condition, const
String &msg) const |
BALL::LineBasedFile |
|
| Transformation
enum name |
BALL::File |
|
| TRANSFORMATION__EXEC enum value (defined in
BALL::File) |
BALL::File |
|
| TRANSFORMATION__FILTER enum value (defined in
BALL::File) |
BALL::File |
|
| TRANSFORMATION__URL enum value (defined in
BALL::File) |
BALL::File |
|
| TRANSFORMATION_EXEC_PREFIX |
BALL::File |
[static] |
| TRANSFORMATION_FILE_PREFIX |
BALL::File |
[static] |
| TRANSFORMATION_FTP_PREFIX |
BALL::File |
[static] |
| TRANSFORMATION_HTTP_PREFIX |
BALL::File |
[static] |
| transformation_manager_ (defined in BALL::File) |
BALL::File |
[protected, static] |
| transformation_methods_ (defined in BALL::File) |
BALL::File |
[protected, static] |
| trim_whitespaces_ (defined in BALL::LineBasedFile) |
BALL::LineBasedFile |
[protected] |
| trimWhiteSpacesEnabled() const (defined in
BALL::LineBasedFile) |
BALL::LineBasedFile |
|
| truncate(String
path, Size size=0) |
BALL::File |
[static] |
| truncate(Size
size=0) |
BALL::File |
|
| Type
enum name |
BALL::File |
|
| TYPE__BLOCK_SPECIAL_FILE enum value (defined in
BALL::File) |
BALL::File |
|
| TYPE__CHAR_SPECIAL_FILE enum value (defined in
BALL::File) |
BALL::File |
|
| TYPE__DIRECTORY enum value (defined in BALL::File) |
BALL::File |
|
| TYPE__FIFO_SPECIAL_FILE enum value (defined in
BALL::File) |
BALL::File |
|
| TYPE__REGULAR_FILE enum value (defined in
BALL::File) |
BALL::File |
|
| TYPE__SOCKET enum value (defined in BALL::File) |
BALL::File |
|
| TYPE__SYMBOLIC_LINK enum value (defined in
BALL::File) |
BALL::File |
|
| TYPE__UNKNOWN enum value (defined in BALL::File) |
BALL::File |
|
| unregisterTransformation(const String
&pattern) (defined in BALL::File) |
BALL::File |
[static] |
|
write(const System &system) |
BALL::SDFile |
[virtual] |
|
write(const Molecule &molecule) |
BALL::SDFile |
[virtual] |
|
writeAtomLine_(const AtomStruct &atom) |
BALL::MOLFile |
[protected] |
|
writeBondLine_(const BondStruct &bond) |
BALL::MOLFile |
[protected] |
|
writeCountsLine_(const CountsStruct &counts) |
BALL::MOLFile |
[protected] |
|
writePropertyBlock_(const Molecule &molecule) |
BALL::SDFile |
[protected] |
| ~File() |
BALL::File |
[virtual] |
|
~GenericMolFile() |
BALL::GenericMolFile |
[virtual] |
|
~MOLFile() |
BALL::MOLFile |
[virtual] |
|
~SDFile() |
BALL::SDFile |
[virtual] |
