abort_by_energy_enabled_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
abort_energy_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
aborted_ (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
[protected] |
curr_num_of_vect_pairs_ |
BALL::StrangLBFGSMinimizer |
[protected] |
current_energy_ |
BALL::EnergyMinimizer |
[protected] |
current_grad_ |
BALL::EnergyMinimizer |
[protected] |
cutlo_ |
BALL::EnergyMinimizer |
[protected] |
direction_ |
BALL::EnergyMinimizer |
[protected] |
enableEnergyAbortCondition(bool state) |
BALL::EnergyMinimizer |
|
energy_difference_bound_ |
BALL::EnergyMinimizer |
[protected] |
energy_output_frequency_ |
BALL::EnergyMinimizer |
[protected] |
energy_update_counter_ |
BALL::EnergyMinimizer |
[protected] |
energyAbortConditionEnabled() const |
BALL::EnergyMinimizer |
|
EnergyMinimizer() |
BALL::EnergyMinimizer |
|
EnergyMinimizer(ForceField &force_field) |
BALL::EnergyMinimizer |
|
EnergyMinimizer(ForceField &force_field, const
Options &options) |
BALL::EnergyMinimizer |
|
EnergyMinimizer(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
findStep() |
BALL::StrangLBFGSMinimizer |
[virtual] |
finishIteration() |
BALL::EnergyMinimizer |
[virtual] |
first_iter_ |
BALL::StrangLBFGSMinimizer |
[protected] |
force_field_ |
BALL::EnergyMinimizer |
[protected] |
force_update_counter_ |
BALL::EnergyMinimizer |
[protected] |
getDirection() |
BALL::EnergyMinimizer |
|
getEnergy() const |
BALL::EnergyMinimizer |
|
getEnergy() |
BALL::EnergyMinimizer |
|
getEnergyDifferenceBound() const |
BALL::EnergyMinimizer |
|
getEnergyOutputFrequency() const |
BALL::EnergyMinimizer |
|
getEnergyToAbort() const (defined in BALL::EnergyMinimizer) |
BALL::EnergyMinimizer |
|
getEnergyUpdateCounter() const |
BALL::EnergyMinimizer |
|
getForceField() |
BALL::EnergyMinimizer |
|
getForceUpdateCounter() const |
BALL::EnergyMinimizer |
|
getGradient() |
BALL::EnergyMinimizer |
|
getImprovedFlag() const |
BALL::StrangLBFGSMinimizer |
|
getInitialEnergy() const |
BALL::EnergyMinimizer |
|
getInitialEnergy() |
BALL::EnergyMinimizer |
|
getInitialGradient() |
BALL::EnergyMinimizer |
|
getMaxGradient() const |
BALL::EnergyMinimizer |
|
getMaximumDisplacement() const |
BALL::EnergyMinimizer |
|
getMaxNumberOfIterations() const |
BALL::EnergyMinimizer |
|
getMaxNumOfStoredVectPairs() const |
BALL::StrangLBFGSMinimizer |
|
getMaxSameEnergy() const |
BALL::EnergyMinimizer |
|
getNumberOfIterations() const |
BALL::EnergyMinimizer |
|
getSnapShotFrequency() const |
BALL::EnergyMinimizer |
|
improved_ |
BALL::StrangLBFGSMinimizer |
[protected] |
index_of_free_vect_ |
BALL::StrangLBFGSMinimizer |
[protected] |
initial_atoms_ |
BALL::StrangLBFGSMinimizer |
[protected] |
initial_energy_ |
BALL::EnergyMinimizer |
[protected] |
initial_grad_ |
BALL::EnergyMinimizer |
[protected] |
isConverged() const |
BALL::EnergyMinimizer |
[virtual] |
isValid() const |
BALL::EnergyMinimizer |
|
line_search_ |
BALL::StrangLBFGSMinimizer |
[protected] |
max_gradient_ |
BALL::EnergyMinimizer |
[protected] |
max_num_of_vect_pairs_ |
BALL::StrangLBFGSMinimizer |
[protected] |
max_same_energy_ |
BALL::EnergyMinimizer |
[protected] |
maximal_number_of_iterations_ |
BALL::EnergyMinimizer |
[protected] |
maximum_displacement_ |
BALL::EnergyMinimizer |
[protected] |
minimize(Size iterations=0, bool resume=false) |
BALL::StrangLBFGSMinimizer |
[virtual] |
number_of_atoms_ |
BALL::StrangLBFGSMinimizer |
[protected] |
number_of_iterations_ |
BALL::EnergyMinimizer |
[protected] |
old_energy_ |
BALL::EnergyMinimizer |
[protected] |
old_grad_ |
BALL::EnergyMinimizer |
[protected] |
operator=(const StrangLBFGSMinimizer &rhs) |
BALL::StrangLBFGSMinimizer |
|
BALL::EnergyMinimizer::operator=(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
operator==(const EnergyMinimizer
&energy_minimizer) |
BALL::EnergyMinimizer |
|
options |
BALL::EnergyMinimizer |
|
printEnergy() const |
BALL::EnergyMinimizer |
[virtual] |
rho_ |
BALL::StrangLBFGSMinimizer |
[protected] |
same_energy_counter_ |
BALL::EnergyMinimizer |
[protected] |
setEnergyDifferenceBound(float
energy_difference_bound) |
BALL::EnergyMinimizer |
|
setEnergyOutputFrequency(Size
energy_output_frequency) |
BALL::EnergyMinimizer |
|
setEnergyToAbort(float value) |
BALL::EnergyMinimizer |
|
setImprovedFlag(bool flag) |
BALL::StrangLBFGSMinimizer |
|
setMaxGradient(float max_gradient) |
BALL::EnergyMinimizer |
|
setMaximumDisplacement(float maximum_displacement) |
BALL::EnergyMinimizer |
|
setMaxNumberOfIterations(Size
number_of_iterations) |
BALL::EnergyMinimizer |
|
setMaxNumOfStoredVectPairs(Size num) |
BALL::StrangLBFGSMinimizer |
|
setMaxSameEnergy(Size number) |
BALL::EnergyMinimizer |
|
setNumberOfIterations(Size number_of_iterations) |
BALL::EnergyMinimizer |
|
setSnapShotFrequency(Size snapshot_frequency) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, SnapShotManager
*ssm) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, SnapShotManager
*ssm, const Options &options) |
BALL::EnergyMinimizer |
|
setup(ForceField &force_field, const Options
&options) |
BALL::EnergyMinimizer |
|
snapshot_ |
BALL::EnergyMinimizer |
[protected] |
snapshot_frequency_ |
BALL::EnergyMinimizer |
[protected] |
specificSetup() |
BALL::StrangLBFGSMinimizer |
[virtual] |
step_ |
BALL::EnergyMinimizer |
[protected] |
stored_s_ |
BALL::StrangLBFGSMinimizer |
[protected] |
stored_y_ |
BALL::StrangLBFGSMinimizer |
[protected] |
storeGradientEnergy() |
BALL::EnergyMinimizer |
|
StrangLBFGSMinimizer() |
BALL::StrangLBFGSMinimizer |
|
StrangLBFGSMinimizer(ForceField &force_field) |
BALL::StrangLBFGSMinimizer |
|
StrangLBFGSMinimizer(ForceField &force_field,
SnapShotManager *ssm) |
BALL::StrangLBFGSMinimizer |
|
StrangLBFGSMinimizer(ForceField &force_field,
SnapShotManager *ssm, const Options &options) |
BALL::StrangLBFGSMinimizer |
|
StrangLBFGSMinimizer(ForceField &force_field, const
Options &options) |
BALL::StrangLBFGSMinimizer |
|
StrangLBFGSMinimizer(const StrangLBFGSMinimizer
&rhs) |
BALL::StrangLBFGSMinimizer |
|
takeSnapShot() const |
BALL::EnergyMinimizer |
[virtual] |
updateDirection() |
BALL::StrangLBFGSMinimizer |
[virtual] |
updateEnergy() |
BALL::EnergyMinimizer |
[virtual] |
updateForces() |
BALL::EnergyMinimizer |
[virtual] |
valid_ |
BALL::EnergyMinimizer |
[protected] |
wasAborted() const |
BALL::EnergyMinimizer |
|
work_val_ |
BALL::StrangLBFGSMinimizer |
[protected] |
~EnergyMinimizer() |
BALL::EnergyMinimizer |
[virtual] |
~StrangLBFGSMinimizer() |
BALL::StrangLBFGSMinimizer |
[virtual] |