|
addHydrogens() |
BALL::VIEW::MolecularStructure |
[slot] |
|
addToolBarEntries(QToolBar *main_tb) |
BALL::VIEW::ModularWidget |
[virtual] |
| AMBER_FF enum value (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
applyPreferences() |
BALL::VIEW::ModularWidget |
[virtual] |
|
buildBonds() |
BALL::VIEW::MolecularStructure |
[slot] |
|
buildPeptide() |
BALL::VIEW::MolecularStructure |
[slot] |
| calculateFDPB(bool show=true) (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
[slot] |
|
calculateForceFieldEnergy() |
BALL::VIEW::MolecularStructure |
[slot] |
|
calculateHBonds() |
BALL::VIEW::MolecularStructure |
[slot] |
|
calculateRamachandranPlot() |
BALL::VIEW::MolecularStructure |
[slot] |
|
calculateRMSD() |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
|
calculateSecondaryStructure() |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
|
canHandle(const String &) const |
BALL::VIEW::ModularWidget |
[virtual] |
|
centerCamera(Composite *composite=0) |
BALL::VIEW::MolecularStructure |
[slot] |
| CHARMM_FF enum value (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
checkMenu(MainControl &main_control) |
BALL::VIEW::MolecularStructure |
[virtual] |
|
checkResidue() |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
|
chooseAmberFF() |
BALL::VIEW::MolecularStructure |
[slot] |
|
chooseCharmmFF() |
BALL::VIEW::MolecularStructure |
[slot] |
| chooseForceField(Position nr) (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
[slot] |
|
chooseMMFF94() |
BALL::VIEW::MolecularStructure |
[slot] |
|
clear() |
BALL::VIEW::ModularWidget |
[virtual] |
|
ConnectionObject() |
BALL::VIEW::ConnectionObject |
|
|
countInstances_(const std::type_info &type) |
BALL::Embeddable |
[protected, static] |
| createGridFromCameraDistance() (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
|
createGridFromDistance() |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
| default_visible_ (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[protected] |
|
destroy() |
BALL::VIEW::ModularWidget |
[virtual] |
|
dump(std::ostream &s=std::cout, Size depth=0)
const |
BALL::VIEW::ModularWidget |
[virtual] |
|
Embeddable(const String
&identifier="<Embeddable>") |
BALL::Embeddable |
|
|
Embeddable(const Embeddable &embeddable) |
BALL::Embeddable |
|
| EmbeddableVector typedef (defined in BALL::Embeddable) |
BALL::Embeddable |
|
|
fetchPreferences(INIFile &inifile) |
BALL::VIEW::MolecularStructure |
[virtual] |
|
finalizePreferencesTab(Preferences
&preferences) |
BALL::VIEW::ModularWidget |
[virtual] |
|
finalizeWidget(MainControl &main_control) |
BALL::VIEW::ModularWidget |
[virtual] |
|
getAmberConfigurationDialog() |
BALL::VIEW::MolecularStructure |
|
|
getAmberFF() |
BALL::VIEW::MolecularStructure |
|
| getBondOrderDialog() (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getBondOrderDialog() const (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getBondOrderResultsDialog() (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getBondOrderResultsDialog() const (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
getCharmmConfigurationDialog() |
BALL::VIEW::MolecularStructure |
|
|
getCharmmFF() |
BALL::VIEW::MolecularStructure |
|
| getFDPBDialog() (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
getForceField() |
BALL::VIEW::MolecularStructure |
|
|
getFragmentDB() const |
BALL::VIEW::ModularWidget |
|
|
getIdentifier() const |
BALL::Embeddable |
|
|
getInstance_(const std::type_info &type, Position
index) |
BALL::Embeddable |
[protected, static] |
|
getInstance_(const std::type_info &type, const
String &identifier) |
BALL::Embeddable |
[protected, static] |
|
getMainControl() const |
BALL::VIEW::ModularWidget |
|
| getMDSimulationDialog() (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getMinimizationDialog() (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getMMFF94() (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
| getMMFF94ConfigurationDialog() (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
getParent() const |
BALL::VIEW::ConnectionObject |
|
|
getRoot() |
BALL::VIEW::ConnectionObject |
|
|
getWorkingDir() |
BALL::VIEW::ModularWidget |
|
|
initializePreferencesTab(Preferences
&preferences) |
BALL::VIEW::ModularWidget |
[virtual] |
|
initializeWidget(MainControl &main_control) |
BALL::VIEW::MolecularStructure |
[virtual] |
| insertMenuEntry(Position parent_id, const String
&name, const QObject *receiver=0, const char *slot=0,
const String &description="", QKeySequence
accel=QKeySequence()) (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
|
|
isConnectionObjectRegistered(const ConnectionObject
&object) |
BALL::VIEW::ConnectionObject |
|
|
isValid() const |
BALL::VIEW::ConnectionObject |
[virtual] |
| last_action_ (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[protected] |
|
lockComposites() |
BALL::VIEW::ModularWidget |
|
| main_toolbar_actions_ (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[protected] |
|
mapProteins() |
BALL::VIEW::MolecularStructure |
[virtual, slot] |
|
MDSimulation(bool show_dialog_=true) |
BALL::VIEW::MolecularStructure |
[slot] |
| MMFF94_FF enum value (defined in BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
|
|
ModularWidget(const char
*name="<ModularWidget>") |
BALL::VIEW::ModularWidget |
|
|
ModularWidget(const ModularWidget &widget) |
BALL::VIEW::ModularWidget |
|
|
MolecularStructure(QWidget *parent=0, const char
*name=0) |
BALL::VIEW::MolecularStructure |
|
|
MolecularStructure(const MolecularStructure
&m) |
BALL::VIEW::MolecularStructure |
|
|
notify_(Message *message) |
BALL::VIEW::ConnectionObject |
[protected] |
|
notify_(Message &message) |
BALL::VIEW::ConnectionObject |
[protected] |
|
onNotify(Message *message) |
BALL::VIEW::MolecularStructure |
[virtual] |
| onNotify_(Message *message) (defined in
BALL::VIEW::ConnectionObject) |
BALL::VIEW::ConnectionObject |
[protected] |
|
openFile(const String &) |
BALL::VIEW::ModularWidget |
[virtual] |
|
registerConnectionObject(ConnectionObject
&object) |
BALL::VIEW::ConnectionObject |
|
|
registerForHelpSystem(const QObject *object, const
String &url) |
BALL::VIEW::ModularWidget |
[virtual] |
| registerInstance_(const std::type_info
&type, const Embeddable *instance) (defined in
BALL::Embeddable) |
BALL::Embeddable |
[protected, static] |
|
registerThis() |
BALL::Embeddable |
[virtual] |
|
registerWidget(ModularWidget *mwidget) |
BALL::VIEW::ModularWidget |
[static] |
|
runBondOrderAssignment(bool show_dialog=true) |
BALL::VIEW::MolecularStructure |
[slot] |
|
runMinimization(bool show_dialog_=true) |
BALL::VIEW::MolecularStructure |
[slot] |
|
setIcon(const String &filename, bool
add_to_main_toolbar=true) |
BALL::VIEW::ModularWidget |
|
|
setIdentifier(const String &identifier) |
BALL::Embeddable |
|
|
setMenuHelp(const String &url) |
BALL::VIEW::ModularWidget |
|
|
setMenuHint(const String &hint) |
BALL::VIEW::ModularWidget |
|
|
setStatusbarText(String text, bool
important=false) |
BALL::VIEW::ModularWidget |
[virtual] |
|
setupForceField() |
BALL::VIEW::MolecularStructure |
[slot] |
|
setWorkingDir(const String &dir) |
BALL::VIEW::ModularWidget |
|
| setWorkingDirFromFilename_(String filename)
(defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
|
| show_window_enty_ (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[protected] |
|
showAmberForceFieldOptions() |
BALL::VIEW::MolecularStructure |
[slot] |
|
showBondOrderAssignmentResults(AssignBondOrderProcessor
&bop) |
BALL::VIEW::MolecularStructure |
[slot] |
|
showCharmmForceFieldOptions() |
BALL::VIEW::MolecularStructure |
[slot] |
| showHelp(const String &url) (defined in
BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[virtual] |
| showMMFF94ForceFieldOptions() (defined in
BALL::VIEW::MolecularStructure) |
BALL::VIEW::MolecularStructure |
[slot] |
|
unlockComposites() |
BALL::VIEW::ModularWidget |
|
|
unregisterConnectionObject(ConnectionObject
&object) |
BALL::VIEW::ConnectionObject |
|
| unregisterInstance_(const Embeddable *instance)
(defined in BALL::Embeddable) |
BALL::Embeddable |
[protected, static] |
|
unregisterThis() |
BALL::Embeddable |
|
| window_menu_entry_ (defined in BALL::VIEW::ModularWidget) |
BALL::VIEW::ModularWidget |
[protected] |
|
writePreferences(INIFile &inifile) |
BALL::VIEW::MolecularStructure |
[virtual] |
|
~ConnectionObject() |
BALL::VIEW::ConnectionObject |
[virtual] |
| ~Embeddable() (defined in BALL::Embeddable) |
BALL::Embeddable |
[virtual] |
|
~ModularWidget() |
BALL::VIEW::ModularWidget |
[virtual] |
|
~MolecularStructure() |
BALL::VIEW::MolecularStructure |
[virtual] |
