BALL::TriangulatedSurface Class Reference
[Molecular Surface Computation]

#include <BALL/STRUCTURE/triangulatedSurface.h>

Inheritance diagram for BALL::TriangulatedSurface:

Public Types
Type definitions

typedef std::list < TrianglePoint * >::iterator	PointIterator
typedef std::list < TrianglePoint * > ::const_iterator	ConstPointIterator
typedef std::list < TriangleEdge * >::iterator	EdgeIterator
typedef std::list < TriangleEdge * > ::const_iterator	ConstEdgeIterator
typedef std::list< Triangle * > ::iterator	TriangleIterator
typedef std::list< Triangle * > ::const_iterator	ConstTriangleIterator
Public Member Functions
Constructors and Destructors

	TriangulatedSurface ()
	TriangulatedSurface (const TriangulatedSurface &surface, bool=true)
virtual	~TriangulatedSurface ()
Assignment

void	clear ()
void	set (const TriangulatedSurface &surface, bool=true)
TriangulatedSurface &	operator= (const TriangulatedSurface &surface)
Accessors

void	insert (TrianglePoint *point)
void	insert (TriangleEdge *edge)
void	insert (Triangle *triangle)
BALL_DEPRECATED Size	numberOfPoints () const
Size	getNumberOfPoints () const
BALL_DEPRECATED Size	numberOfEdges () const
Size	getNumberOfEdges () const
BALL_DEPRECATED Size	numberOfTriangles () const
Size	getNumberOfTriangles () const
void	remove (TrianglePoint *point, bool deep=true)
void	remove (PointIterator p, bool deep=true)
void	remove (TriangleEdge *edge, bool deep=true)
void	remove (EdgeIterator e, bool deep=true)
void	remove (Triangle *triangle, bool deep=true)
void	remove (TriangleIterator t, bool deep=true)
void	exportSurface (Surface &surface)
TriangulatedSurface &	operator+= (const TriangulatedSurface &surface)
void	join (TriangulatedSurface &source)
void	shift (const TVector3< double > &c)
void	blowUp (const double &r)
void	setIndices ()
void	setDensity (const double &density)
double	getDensity () const
void	cut (const TPlane3< double > &plane, const double &fuzzy=0)
void	shrink ()
void	deleteIsolatedEdges ()
void	deleteIsolatedPoints ()
void	getBorder (std::list< TriangleEdge * > &border)
Static Public Member Functions
Static Members

static TriangulatedSurface *	createTube (unsigned int num_vertices, unsigned int subdiv=0, bool closed=false, bool out=true)
static TriangulatedSurface *	createDisk (unsigned int num_vertices, bool out=true)
External Iterators

Size	number_of_points_
std::list< TrianglePoint * >	points_
Size	number_of_edges_
std::list< TriangleEdge * >	edges_
Size	number_of_triangles_
std::list< Triangle * >	triangles_
double	density_
PointIterator	beginPoint ()
ConstPointIterator	beginPoint () const
PointIterator	endPoint ()
ConstPointIterator	endPoint () const
EdgeIterator	beginEdge ()
ConstEdgeIterator	beginEdge () const
EdgeIterator	endEdge ()
ConstEdgeIterator	endEdge () const
TriangleIterator	beginTriangle ()
ConstTriangleIterator	beginTriangle () const
TriangleIterator	endTriangle ()
ConstTriangleIterator	endTriangle () const
bool	canBeCopied () const
void	copy (const TriangulatedSurface &surface)

Detailed Description

Generic TriangulatedSurface Class.

Definition at line 40 of file triangulatedSurface.h.

Member Typedef Documentation

typedef std::list<TriangleEdge*>::const_iterator BALL::TriangulatedSurface::ConstEdgeIterator

Definition at line 58 of file triangulatedSurface.h.

typedef std::list<TrianglePoint*>::const_iterator BALL::TriangulatedSurface::ConstPointIterator

Definition at line 54 of file triangulatedSurface.h.

typedef std::list<Triangle*>::const_iterator BALL::TriangulatedSurface::ConstTriangleIterator

Definition at line 62 of file triangulatedSurface.h.

typedef std::list<TriangleEdge*>::iterator BALL::TriangulatedSurface::EdgeIterator

Definition at line 56 of file triangulatedSurface.h.

typedef std::list<TrianglePoint*>::iterator BALL::TriangulatedSurface::PointIterator

Definition at line 52 of file triangulatedSurface.h.

typedef std::list<Triangle*>::iterator BALL::TriangulatedSurface::TriangleIterator

Definition at line 60 of file triangulatedSurface.h.

Constructor & Destructor Documentation

BALL::TriangulatedSurface::TriangulatedSurface ( )

Default constructor. This method creates a new TriangulatedSurface object.

BALL::TriangulatedSurface::TriangulatedSurface	(	const TriangulatedSurface &	surface,
		bool	= `true`
	)

Copy constructor. Create a new TriangulatedSurface object from another.

Parameters:

	surface	the TriangulatedSurface object to be copied
	bool	ignored - just for interface consistency

virtual BALL::TriangulatedSurface::~TriangulatedSurface ( ) [virtual]

Destructor. Destructs the TriangulatedSurface object.

Member Function Documentation

ConstEdgeIterator BALL::TriangulatedSurface::beginEdge ( ) const

EdgeIterator BALL::TriangulatedSurface::beginEdge ( )

ConstPointIterator BALL::TriangulatedSurface::beginPoint ( ) const

PointIterator BALL::TriangulatedSurface::beginPoint ( )

ConstTriangleIterator BALL::TriangulatedSurface::beginTriangle ( ) const

TriangleIterator BALL::TriangulatedSurface::beginTriangle ( )

void BALL::TriangulatedSurface::blowUp ( const double & r )

Blow up th TriangulatedSurface. All points are multiplied by a scalar r.

Parameters:

r

the blow up factor

bool BALL::TriangulatedSurface::canBeCopied ( ) const [protected]

void BALL::TriangulatedSurface::clear ( )

Delete all points, edges and triangles.

void BALL::TriangulatedSurface::copy ( const TriangulatedSurface & surface ) [protected]

static TriangulatedSurface* BALL::TriangulatedSurface::createDisk	(	unsigned int	num_vertices,
		bool	out = `true`
	)			`[static]`

A static function that constructs a triangulated disk. The disk lies in the x-y plane and has radius 1.

Parameters:

	num_vertices	The amount of vertices of which the border of the disk is composed
	out	Controls whether the normals of the tube are pointing up or downwards. Default: true

static TriangulatedSurface* BALL::TriangulatedSurface::createTube	(	unsigned int	num_vertices,
		unsigned int	subdiv = `0`,
		bool	closed = `false`,
		bool	out = `true`
	)			`[static]`

A static function that constructs a triangulated tube. The tube is oriented along the z-axis, starts at z=0, ends at z=1 and has radius 1

Parameters:

	num_vertices	The amount of vertices of which the base of the tube is composed
	subdiv	Controls the amount of subdivisions along the z-axis. Default: 0
	closed	Should the tube have opend or closed ends? Default: false
	out	Controls whether the normals of the tube are pointing in or outwards. Default: true

void BALL::TriangulatedSurface::cut	(	const TPlane3< double > &	plane,
		const double &	fuzzy = `0`
	)

Cut the TriangulatedSurface on a plane.

Parameters:

	plane	the plane to cut on
	fuzzy

void BALL::TriangulatedSurface::deleteIsolatedEdges ( )

Delete all isolated edges of the TriangulatedSurface

void BALL::TriangulatedSurface::deleteIsolatedPoints ( )

Delete all isolated points of the TriangulatedSurface

ConstEdgeIterator BALL::TriangulatedSurface::endEdge ( ) const

EdgeIterator BALL::TriangulatedSurface::endEdge ( )

ConstPointIterator BALL::TriangulatedSurface::endPoint ( ) const

PointIterator BALL::TriangulatedSurface::endPoint ( )

ConstTriangleIterator BALL::TriangulatedSurface::endTriangle ( ) const

TriangleIterator BALL::TriangulatedSurface::endTriangle ( )

void BALL::TriangulatedSurface::exportSurface ( Surface & surface )

Create a Surface object from the TriangulatedeSurface.

Parameters:

surface

the created Surface object

void BALL::TriangulatedSurface::getBorder ( std::list< TriangleEdge * > & border )

Get the border edges of the TriangulatedSurface. Border edges are the edges with only one triangle.

Parameters:

border

a list of the border edges

double BALL::TriangulatedSurface::getDensity ( ) const

Get the density used by triangulation algorithms.

Reimplemented in BALL::TriangulatedSAS, and BALL::TriangulatedSES.

Size BALL::TriangulatedSurface::getNumberOfEdges ( ) const

Get the number of edges of the TriangulatedSurface.

Size BALL::TriangulatedSurface::getNumberOfPoints ( ) const

Get the number of points of the TriangulatedSurface.

Deprecated:: Use TriangulatedSurface::getNumberOfPoints() instead

Size BALL::TriangulatedSurface::getNumberOfTriangles ( ) const

Get the number of triangles of the TriangulatedSurface. Use TriangulatedSurface::getNumberOfTriangles() instead

void BALL::TriangulatedSurface::insert ( Triangle * triangle )

Insert a new triangle to the TriangulatedSurface.

Parameters:

triangle

a pointer to the new triangle

void BALL::TriangulatedSurface::insert ( TriangleEdge * edge )

Insert a new edge to the TriangulatedSurface.

Parameters:

edge

a pointer to the new edge

void BALL::TriangulatedSurface::insert ( TrianglePoint * point )

Insert a new point to the TriangulatedSurface.

Parameters:

point

a pointer to the new point

void BALL::TriangulatedSurface::join ( TriangulatedSurface & source )

Add a TriangulatedSurface object. The lists of points, edges and triangles of the given TriangulatedSurface objact are appended. After this operation, the given TriangulatedSurface objact will be empty!

Parameters:

source

the TriangulatedSurface object to add

BALL_DEPRECATED Size BALL::TriangulatedSurface::numberOfEdges ( ) const

Get the number of edges of the TriangulatedSurface.

Deprecated:: Use TriangulatedSurface::getNumberOfEdges() instead

BALL_DEPRECATED Size BALL::TriangulatedSurface::numberOfPoints ( ) const

Get the number of points of the TriangulatedSurface.

Deprecated:: Use TriangulatedSurface::getNumberOfPoints() instead

BALL_DEPRECATED Size BALL::TriangulatedSurface::numberOfTriangles ( ) const

Get the number of triangles of the TriangulatedSurface.

Deprecated:: Use TriangulatedSurface::getNumberOfTriangles() instead

TriangulatedSurface& BALL::TriangulatedSurface::operator+= ( const TriangulatedSurface & surface )

Add a TriangulatedSurface object. The lists of points, edges and triangles of the given TriangulatedSurface objact are appended. The given TriangulatedSurface objact will be unchanged.

Parameters:

surface

the TriangulatedSurface object to add

TriangulatedSurface& BALL::TriangulatedSurface::operator= ( const TriangulatedSurface & surface )

Assign from another TriangulatedSurface.

Parameters:

surface

the TriangulatedSurface object to assign from

void BALL::TriangulatedSurface::remove	(	TriangleIterator	t,
		bool	deep = `true`
	)

Remove a triangle from the TriangulatedSurface. If deep is true (not default) the incidence-structure will be updated.

Parameters:

	t	an iterator into the list of triangles of the TriangulatedSurface which indicates the triangle to delete
	deep	look above

void BALL::TriangulatedSurface::remove	(	Triangle *	triangle,
		bool	deep = `true`
	)

Remove a triangle from the TriangulatedSurface. If deep is true (not default) the incidence-structure will be updated.

Parameters:

	triangle	a pointer to the triangle to delete
	deep	look above

void BALL::TriangulatedSurface::remove	(	EdgeIterator	e,
		bool	deep = `true`
	)

Remove an edge from the TriangulatedSurface. If deep is true (not default) the incidence-structure will be updated.

Parameters:

	e	an iterator into the list of edges of the TriangulatedSurface which indicates the edge to delete
	deep	look above

void BALL::TriangulatedSurface::remove	(	TriangleEdge *	edge,
		bool	deep = `true`
	)

Remove an edge from the TriangulatedSurface. If deep is true (not default) the incidence-structure will be updated.

Parameters:

	edge	a pointer to the edge to delete
	deep	look above

void BALL::TriangulatedSurface::remove	(	PointIterator	p,
		bool	deep = `true`
	)

Remove a point from the TriangulatedSurface. If deep is true (default) the incidence-structure will be updated.

Parameters:

	p	an iterator into the list of points of the TriangulatedSurface which indicates the point to delete
	deep	look above

void BALL::TriangulatedSurface::remove	(	TrianglePoint *	point,
		bool	deep = `true`
	)

Remove a point from the TriangulatedSurface. If deep is true (default) the incidence-structure will be updated.

Parameters:

	point	a pointer to the point to delete
	deep	look above

void BALL::TriangulatedSurface::set	(	const TriangulatedSurface &	surface,
		bool	= `true`
	)

Assign from another TriangulatedSurface.

Parameters:

	surface	the TriangulatedSurface object to assign from
	bool	ignored - just for interface consistency

void BALL::TriangulatedSurface::setDensity ( const double & density )

Set the density used by triangulation algorithms.

Reimplemented in BALL::TriangulatedSAS, and BALL::TriangulatedSES.

void BALL::TriangulatedSurface::setIndices ( )

Set the indices of all points, edges and triangles.

void BALL::TriangulatedSurface::shift ( const TVector3< double > & c )

Shift the TriangulatedSurface. All points are shifted by a vector c.

Parameters:

c

the shift vector

void BALL::TriangulatedSurface::shrink ( )

Delete all triangles on the border of the TriangulatedSurface

Member Data Documentation

double BALL::TriangulatedSurface::density_ [protected]

Reimplemented in BALL::TriangulatedSAS, and BALL::TriangulatedSES.

Definition at line 375 of file triangulatedSurface.h.

std::list<TriangleEdge*> BALL::TriangulatedSurface::edges_ [protected]

Definition at line 365 of file triangulatedSurface.h.

Size BALL::TriangulatedSurface::number_of_edges_ [protected]

Definition at line 362 of file triangulatedSurface.h.

Size BALL::TriangulatedSurface::number_of_points_ [protected]

Definition at line 356 of file triangulatedSurface.h.

Size BALL::TriangulatedSurface::number_of_triangles_ [protected]

Definition at line 368 of file triangulatedSurface.h.

std::list<TrianglePoint*> BALL::TriangulatedSurface::points_ [protected]

Definition at line 359 of file triangulatedSurface.h.

std::list<Triangle*> BALL::TriangulatedSurface::triangles_ [protected]

Definition at line 371 of file triangulatedSurface.h.

BALL::TriangulatedSurface Class Reference [Molecular Surface Computation]

Public Types

Public Member Functions

Static Public Member Functions

External Iterators

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

BALL::TriangulatedSurface Class Reference
[Molecular Surface Computation]