OpenMS
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The main feature finder class. More...
#include <OpenMS/FEATUREFINDER/FeatureFinder.h>
Public Member Functions | |
FeatureFinder () | |
Default constructor. More... | |
~FeatureFinder () override | |
Destructor. More... | |
const Flag & | getPeakFlag (const IndexPair &index) const |
Returns a non-mutable reference to a peak flag. More... | |
Flag & | getPeakFlag (const IndexPair &index) |
Returns mutable reference to a peak flag. More... | |
Param | getParameters (const String &algorithm_name) const |
Returns the default parameters for the algorithm with name algorithm_name . More... | |
Public Member Functions inherited from ProgressLogger | |
ProgressLogger () | |
Constructor. More... | |
virtual | ~ProgressLogger () |
Destructor. More... | |
ProgressLogger (const ProgressLogger &other) | |
Copy constructor. More... | |
ProgressLogger & | operator= (const ProgressLogger &other) |
Assignment Operator. More... | |
void | setLogType (LogType type) const |
Sets the progress log that should be used. The default type is NONE! More... | |
LogType | getLogType () const |
Returns the type of progress log being used. More... | |
void | setLogger (ProgressLoggerImpl *logger) |
Sets the logger to be used for progress logging. More... | |
void | startProgress (SignedSize begin, SignedSize end, const String &label) const |
Initializes the progress display. More... | |
void | setProgress (SignedSize value) const |
Sets the current progress. More... | |
void | endProgress (UInt64 bytes_processed=0) const |
void | nextProgress () const |
increment progress by 1 (according to range begin-end) More... | |
Protected Attributes | |
std::vector< std::vector< Flag > > | flags_ |
Container for flags attached to input data. More... | |
Protected Attributes inherited from ProgressLogger | |
LogType | type_ |
time_t | last_invoke_ |
ProgressLoggerImpl * | current_logger_ |
Additional Inherited Members | |
Public Types inherited from ProgressLogger | |
enum | LogType { CMD , GUI , NONE } |
Possible log types. More... | |
Public Types inherited from FeatureFinderDefs | |
enum | Flag { UNUSED , USED } |
Flags that indicate if a peak is already used in a feature. More... | |
typedef IsotopeCluster::IndexPair | IndexPair |
Index to peak consisting of two UInts (scan index / peak index) More... | |
typedef IsotopeCluster::ChargedIndexSet | ChargedIndexSet |
Index to peak consisting of two UInts (scan index / peak index) with charge information. More... | |
typedef IsotopeCluster::IndexSet | IndexSet |
A set of peak indices. More... | |
Static Protected Attributes inherited from ProgressLogger | |
static int | recursion_depth_ |
The main feature finder class.
FeatureFinder | ( | ) |
Default constructor.
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override |
Destructor.
Returns the default parameters for the algorithm with name algorithm_name
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Returns a non-mutable reference to a peak flag.
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protected |
Container for flags attached to input data.