FileHandler Member List

This is the complete list of members for FileHandler, including all inherited members.

applyPostLoadOptions_(MSExperiment &exp) const	FileHandler	private
computeFileHash(const std::string &filename)	FileHandler	static
f_options_	FileHandler	private
getConsistentOutputfileType(const std::string &output_filename, const std::string &requested_type)	FileHandler	static
getFeatOptions()	FileHandler
getFeatOptions() const	FileHandler
getOptions()	FileHandler
getOptions() const	FileHandler
getType(const std::string &filename)	FileHandler	static
getTypeByContent(const std::string &filename)	FileHandler	static
getTypeByFileName(const std::string &filename)	FileHandler	static
hasValidExtension(const std::string &filename, const FileTypes::Type type)	FileHandler	static
isSupported(FileTypes::Type type)	FileHandler	static
loadConsensusFeatures(const std::string &filename, ConsensusMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
loadExperiment(const std::string &filename, PeakMap &exp, const std::vector< FileTypes::Type > allowed_types=std::vector< FileTypes::Type >(), ProgressLogger::LogType log=ProgressLogger::NONE, const bool rewrite_source_file=false, const bool compute_hash=false)	FileHandler
loadFeatures(const std::string &filename, FeatureMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
loadIdentifications(const std::string &filename, std::vector< ProteinIdentification > &additional_proteins, PeptideIdentificationList &additional_peptides, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
loadSpectrum(const std::string &filename, MSSpectrum &spec, const std::vector< FileTypes::Type > allowed_types={})	FileHandler
loadTransformations(const std::string &filename, TransformationDescription &map, bool fit_model=true, const std::vector< FileTypes::Type > allowed_types={})	FileHandler
loadTransitions(const std::string &filename, TargetedExperiment &library, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
options_	FileHandler	private
setFeatOptions(const FeatureFileOptions &)	FileHandler
setOptions(const PeakFileOptions &)	FileHandler
storeConsensusFeatures(const std::string &filename, const ConsensusMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
storeExperiment(const std::string &filename, const PeakMap &exp, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
storeFeatures(const std::string &filename, const FeatureMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
storeIdentifications(const std::string &filename, const std::vector< ProteinIdentification > &additional_proteins, const PeptideIdentificationList &additional_peptides, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
storeQC(const std::string &input_file, const std::string &filename, const MSExperiment &exp, const FeatureMap &feature_map, std::vector< ProteinIdentification > &prot_ids, PeptideIdentificationList &pep_ids, const ConsensusMap &consensus_map, const std::string &contact_name="", const std::string &contact_address="", const std::string &description="", const std::string &label="label", const bool remove_duplicate_features=false, const std::vector< FileTypes::Type > allowed_types={})	FileHandler
storeSpectrum(const std::string &filename, MSSpectrum &spec, const std::vector< FileTypes::Type > allowed_types={})	FileHandler
storeTransformations(const std::string &filename, const TransformationDescription &map, const std::vector< FileTypes::Type > allowed_types={})	FileHandler
storeTransitions(const std::string &filename, const TargetedExperiment &library, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)	FileHandler
stripExtension(const std::string &filename)	FileHandler	static
swapExtension(const std::string &filename, const FileTypes::Type new_type)	FileHandler	static