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FileHandler Member List

This is the complete list of members for FileHandler, including all inherited members.

computeFileHash(const String &filename)FileHandlerstatic
f_options_FileHandlerprivate
getConsistentOutputfileType(const String &output_filename, const String &requested_type)FileHandlerstatic
getFeatOptions()FileHandler
getFeatOptions() constFileHandler
getOptions()FileHandler
getOptions() constFileHandler
getType(const String &filename)FileHandlerstatic
getTypeByContent(const String &filename)FileHandlerstatic
getTypeByFileName(const String &filename)FileHandlerstatic
hasValidExtension(const String &filename, const FileTypes::Type type)FileHandlerstatic
isSupported(FileTypes::Type type)FileHandlerstatic
loadConsensusFeatures(const String &filename, ConsensusMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
loadExperiment(const String &filename, PeakMap &exp, const std::vector< FileTypes::Type > allowed_types=std::vector< FileTypes::Type >(), ProgressLogger::LogType log=ProgressLogger::NONE, const bool rewrite_source_file=false, const bool compute_hash=false)FileHandler
loadFeatures(const String &filename, FeatureMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
loadIdentifications(const String &filename, std::vector< ProteinIdentification > &additional_proteins, std::vector< PeptideIdentification > &additional_peptides, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
loadSpectrum(const String &filename, MSSpectrum &spec, const std::vector< FileTypes::Type > allowed_types={})FileHandler
loadTransformations(const String &filename, TransformationDescription &map, bool fit_model=true, const std::vector< FileTypes::Type > allowed_types={})FileHandler
loadTransitions(const String &filename, TargetedExperiment &library, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
options_FileHandlerprivate
setFeatOptions(const FeatureFileOptions &)FileHandler
setOptions(const PeakFileOptions &)FileHandler
storeConsensusFeatures(const String &filename, const ConsensusMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
storeExperiment(const String &filename, const PeakMap &exp, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
storeFeatures(const String &filename, const FeatureMap &map, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
storeIdentifications(const String &filename, const std::vector< ProteinIdentification > &additional_proteins, const std::vector< PeptideIdentification > &additional_peptides, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
storeQC(const String &input_file, const String &filename, const MSExperiment &exp, const FeatureMap &feature_map, std::vector< ProteinIdentification > &prot_ids, std::vector< PeptideIdentification > &pep_ids, const ConsensusMap &consensus_map=ConsensusMap(), const String &contact_name="", const String &contact_address="", const String &description="", const String &label="label", const bool remove_duplicate_features=false, const std::vector< FileTypes::Type > allowed_types={})FileHandler
storeSpectrum(const String &filename, MSSpectrum &spec, const std::vector< FileTypes::Type > allowed_types={})FileHandler
storeTransformations(const String &filename, const TransformationDescription &map, const std::vector< FileTypes::Type > allowed_types={})FileHandler
storeTransitions(const String &filename, const TargetedExperiment &library, const std::vector< FileTypes::Type > allowed_types={}, ProgressLogger::LogType log=ProgressLogger::NONE)FileHandler
stripExtension(const String &filename)FileHandlerstatic
swapExtension(const String &filename, const FileTypes::Type new_type)FileHandlerstatic