- p -

p : GammaDistributionFitter::GammaDistributionFitResult
p_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , MessagePasserFactory< Label > , ToolDescriptionHandler
p_cleave : EnzymaticDigestionLogModel::CleavageModel_
p_miss : EnzymaticDigestionLogModel::CleavageModel_
p_pv_map_ : MzIdentMLDOMHandler
packages_ : SplineInterpolatedPeaks::Navigator , SplineInterpolatedPeaks
painter_ : Plot3DOpenGLCanvas
pair_min_quality_ : SimplePairFinder
pairfinder_ : MapAlignmentAlgorithmPoseClustering
pairfinder_input_ : FeatureGroupingAlgorithmUnlabeled
param : ToolExternalDetails , LayerDataBase
param_ : DefaultParamHandler , IdXMLFile , INIFileEditorWindow , FeatureXMLHandler , ParamXMLHandler , TOPPViewPrefDialog , LocalLinearMap , MapAlignmentAlgorithmKD , ParamEditor , SVMWrapper , TOPPASToolConfigDialog , TOPPASToolVertex , TOPPBase
param_binsize_ : XFDRAlgorithm
param_cmdline_ : TOPPBase
param_common_ : TOPPBase
param_common_tool_ : TOPPBase
param_decoy_string_ : XFDRAlgorithm
param_groups_ : MzMLValidator , MzQuantMLValidator
param_inifile_ : TOPPBase
param_instance_ : TOPPBase
param_maxborder_ : XFDRAlgorithm
param_minborder_ : XFDRAlgorithm
param_mindeltas_ : XFDRAlgorithm
param_minionsmatched_ : XFDRAlgorithm
param_minscore_ : XFDRAlgorithm
PARAM_NAME : LogConfigHandler
param_name : TOPPASToolVertex::IOInfo
param_no_qvalues_ : XFDRAlgorithm
param_spin : TheoreticalSpectrumGenerationDialog::CheckBox
param_this : TheoreticalSpectrumGenerationDialog::CheckBox
param_uniquexl_ : XFDRAlgorithm
parameter_cvs : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
parameter_ups : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
parameters_ : IdXMLFile , ModelDescription< D > , MzTabParameterList , TOPPBase
params : MRMFeaturePicker::ComponentGroupParams , MRMFeaturePicker::ComponentParams
params_ : AcqusHandler , PepXMLFile , TransformationModel , TransformationXMLFile
params_intensity_ : FeatureDistance
params_mz_ : FeatureDistance
params_rt_ : FeatureDistance
parent_grouping_keys_ : OMSFileStore
parent_groups_ : IdentificationData
parent_lookup_ : IdentificationData
parent_matches : IdentifiedSequence< SeqType >
parent_refs : ParentGroup
parent_sequence_keys_ : OMSFileStore
parent_sequence_refs : IdentificationData::RefTranslator
parent_sequence_refs_ : OMSFileLoad
parents : ControlledVocabulary::CVTerm
parents_ : IdentificationData
parse_double_ : StringUtilsHelper
parse_float_ : StringUtilsHelper
parse_unknown_scores_ : PepXMLFile
parsing_success_ : IndexedMzMLHandler
partial_sequence_ : SequestInfile
pasef_ : OpenSwathWorkflowBase
pass_threshold_ : IdentificationHit
passatutto : SiriusAdapterAlgorithm
path : ExperimentalDesign::MSFileSectionEntry , ToolExternalDetails
path_ : ParamXMLHandler
path_label_to_assay_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
path_to_file_ : SourceFile , SourceFileVisualizer
pattern_tolerance_ : FeatureFinderAlgorithmPicked
patterns_ : MultiplexFiltering
pbuf_ : LogStreamBuf
pe_ev_map_ : MzIdentMLDOMHandler
peak : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::Seed , PeakIndex
peak_annotations : ObservationMatch
peak_apex_intensity : PeakCandidate
peak_before_mono_max_ppm_diff_ : DIAScoring
peak_bound_ : PeakPickerCWT
peak_bound_ms2_level_ : PeakPickerCWT
peak_colors_1d : LayerData1DBase
peak_corr_bound_ : PeakPickerCWT
peak_count_ : MzDataHandler , MzXMLHandler::SpectrumData
peak_depth : ProbablePhosphoSites
peak_group_map_ : MassFeatureTrace
peak_groups_ : DeconvolvedSpectrum
peak_height_max_ : TargetedSpectraExtractor
peak_height_min_ : TargetedSpectraExtractor
peak_idx : MassTraceDetection::Apex
peak_integration_ : MRMTransitionGroupPicker
peak_map_ : LayerDataPeak , MSSim , SpectrumCheapDPCorr
peak_mass_tolerance_ : InspectInfile , SequestInfile
peak_meta_ : MSDataSqlConsumer
peak_penstyle_ : Plot1DCanvas
peak_position_ : Annotation1DPeakItem< DataPoint >
peak_spread_ : TargetedSpectraExtractor::BinnedSpectrumComparator
peak_tolerance_ : ProteinIdentificationVisualizer
peak_width_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm , PeakPickerIterative , PeakPickerMRM
peakcount_ : NLargest , WindowMower
peaks : FeatureFinderAlgorithmPickedHelperStructs::MassTrace , IsotopeCluster , OptimizePeakDeconvolution::Data , OptimizePick::Data
peaks_ : IMSIsotopeDistribution
peaks_per_peptide_ : MultiplexIsotopicPeakPattern
pen_ : Annotations1DContainer
pen_color_ : TOPPASVertex
pen_size_max_ : Plot2DCanvas
pen_size_min_ : Plot2DCanvas
penalties : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
penalties_ : OptimizePeakDeconvolution , OptimizePick , TwoDOptimization
pep_counter_ : MzTab::CMMzTabStream
pep_hit_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler , ProtXMLFile
pep_id_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler , MzIdentMLDOMHandler , MzIdentMLHandler , MzTab::CMMzTabStream , MzTab::IDMzTabStream , ProtXMLFile
pep_idents : IDRipper::RipFileContent
pep_ids_ : IdXMLFile , XQuestResultXMLHandler
pep_indices : ConnectedComponent
pep_map_ : MzIdentMLDOMHandler
pep_optional_column_names_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
pep_quant_ : PeptideAndProteinQuant
pep_result_ : IDMergerAlgorithm
pep_sequences_ : MzIdentMLHandler
pep_to_indist_prot_grp_ : PeptideProteinResolution
pepHitVtx_to_run_ : IDBoostGraph
pepPrior_ : MessagePasserFactory< Label >
peptide : RNPxlReportRow
peptide_ : AASequence
peptide_abundance_assay : MzTabPeptideSectionRow
peptide_abundance_std_error_study_variable : MzTabPeptideSectionRow
peptide_abundance_stdev_study_variable : MzTabPeptideSectionRow
peptide_abundance_study_variable : MzTabPeptideSectionRow
peptide_compare_ : FeatureFinderIdentificationAlgorithm
peptide_count : TargetedExperiment::SummaryStatistics
peptide_data_ : MzTab
peptide_entries : ProteinResolver::ResolverResult
peptide_evidences_ : IdXMLFile , ConsensusXMLHandler , PeptideHit
peptide_group_label : TransitionTSVFile::TSVTransition , LightCompound
peptide_group_label_ : Peptide
peptide_hit : ProteinResolver::PeptideEntry
peptide_hit_ : PepXMLFile
peptide_hit_index : LayerDataBase
peptide_hit_user_value_keys_ : MzTab::IDMzTabStream
peptide_hits_ : XTandemXMLFile
peptide_id_index : LayerDataBase , OPXLDataStructs::CrossLinkSpectrumMatch
peptide_id_meta_values_ : XQuestResultXMLHandler
peptide_id_user_value_keys_ : MzTab::IDMzTabStream
peptide_identification : ProteinResolver::PeptideEntry , ProteinResolver::ResolverResult
peptide_identification_index_ : MascotXMLHandler
peptide_identifications_ : OMSSAXMLFile
peptide_ids_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
peptide_intensities_ : IsobaricNormalizer
peptide_length_mean : IdentificationSummary::Result
peptide_map_ : FeatureFinderIdentificationAlgorithm
peptide_mass : OPXLDataStructs::AASeqWithMass
peptide_mass_unit_ : SequestInfile
peptide_max_size_ : SimpleSearchEngineAlgorithm
peptide_min_size_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SimpleSearchEngineAlgorithm
peptide_missed_cleavages_ : SimpleSearchEngineAlgorithm
peptide_mod_index : SimpleSearchEngineAlgorithm::AnnotatedHit_
peptide_motif_ : SimpleSearchEngineAlgorithm
peptide_quantification_unit : MzTabMetaData
peptide_ratios_ : IsobaricNormalizer
peptide_ref : LightTransition
peptide_ref_ : IncludeExcludeTarget , ReactionMonitoringTransition
peptide_reference_map_ : TargetedExperiment
peptide_reference_map_dirty_ : TargetedExperiment
peptide_search_engine_score : MzTabMetaData
peptide_seq : OPXLDataStructs::AASeqWithMass
peptide_similarity_ : MultiplexFiltering
peptide_spectrum_matches : IdentificationSummary::Result
peptide_weight : RNPxlReportRow
peptidehit_charge_ : PeptideHitVisualizer
peptidehit_rank_ : PeptideHitVisualizer
peptidehit_score_ : PeptideHitVisualizer
peptidehit_sequence_ : PeptideHitVisualizer
PeptideRefMap_ : MRMFeatureFinderScoring
PeptideRTMap_ : ChromatogramExtractor
peptides : ProteinResolver::ISDGroup , ProteinResolver::MSDGroup , ProteinResolver::ProteinEntry , Protein
peptides_ : BaseFeature , LayerDataIdent , OSWProtein , PepXMLFile , PepXMLFileMascot , TargetedExperiment
PeptideSequence : TransitionTSVFile::TSVTransition
peptidoforms : TransitionTSVFile::TSVTransition
per_charge_cos_ : PeakGroup
per_charge_int_ : PeakGroup
per_charge_intensity : FLASHDeconvHelperStructs::MassFeature
per_charge_noise_pwr_ : PeakGroup
per_charge_snr_ : PeakGroup
per_charge_sum_signal_squared_ : PeakGroup
per_isotope_int_ : PeakGroup
per_isotope_intensity : FLASHDeconvHelperStructs::MassFeature
percentage_ : GradientVisualizer
percentage_factor_ : PlotCanvas
percentages_ : Gradient
percentiles_after : TransformationDescription::TransformationStatistics
percentiles_before : TransformationDescription::TransformationStatistics
percents : TransformationDescription::TransformationStatistics
percTIC : OPXLDataStructs::CrossLinkSpectrumMatch
performance_ : SimpleSVM
permut_ : CompNovoIdentificationBase::Permut
permute_cache_ : CompNovoIdentificationBase
pg2prot_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
pg_scores_ : MRMFeature
ph_ : Digestion
ph_2_sdat_ : MzIdentMLHandler
PI : EmgGradientDescent
pi_ : MRMTransitionGroupPicker
picked_peaks : TwoDOptimization::Data
picker_ : FIAMSDataProcessor , MRMTransitionGroupPicker
pidv_caller_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
pint_mono : SiriusMSFile::CompoundInfo
pka_ : Residue
pkb_ : Residue
pkc_ : Residue
plugin_param_futures_ : TVToolDiscovery
plugin_params_ : ToolsDialog , TVToolDiscovery
plugin_path_ : TVToolDiscovery
plugins_ : TVToolDiscovery
pm_ : LayerStatisticsPeakMap , LayerStoreDataPeakMapVisible
pmass : SiriusMSFile::CompoundInfo
point_indices_ : GridBasedCluster
points_across_baseline : PeakIntegrator::PeakShapeMetrics
points_across_half_height : PeakIntegrator::PeakShapeMetrics
polarity_ : HasScanPolarity< SpectrumType > , InstrumentSettings , IonSource , IonSourceVisualizer
pool_file_ : DocumentIDTagger
pos : PenaltyFactors , PeakPickerMaxima::PeakCandidate
pos_ : Annotation1DVerticalLineItem , ConsensusXMLHandler , ROCCurve
pos_adducts_ : AccurateMassSearchEngine
pos_adducts_fname_ : AccurateMassSearchEngine
pos_charges_ : Compomer
pos_col_ : MultiGradient
pos_max_ : SplineInterpolatedPeaks::Navigator , SplineInterpolatedPeaks , SplinePackage
pos_min_ : SplineInterpolatedPeaks , SplinePackage
pos_param_pairs_ : MzTabModification
pos_step_width_ : SplinePackage
pos_step_width_scaling_ : SplineInterpolatedPeaks::Navigator
position : CompNovoIonScoringBase::IonScore , DeNovoIonScoring::IonScore , EnzymaticDigestionLogModel::BindingSite_ , MzTabModificationMetaData , OPXLDataStructs::AASeqWithMass
position_ : AASequence::ConstIterator , AASequence::Iterator , Annotation1DCaret< DataPoint > , Annotation1DPeakItem< DataPoint > , Annotation1DTextItem , ChromatogramPeak , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , AveragePosition< D > , MobilityPeak1D , MobilityPeak2D , NASequence::ConstIterator , NASequence::Iterator , Peak1D , Peak2D
position_weighted_sum_ : AveragePosition< D >
positions : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
possible_charge_states_ : Precursor
post : MzIdentMLDOMHandler::PeptideEvidence , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
post_moves : MappingParam
posterior_error_prob : OSWFile::PercolatorFeature
potential_adducts_ : FeatureDeconvolution , MetaboliteFeatureDeconvolution
potential_cmp : MetaboTargetedAssay
potential_rmts : MetaboTargetedAssay
potential_target_ : TOPPASScene
pp_ : PeakPickerMRM
pp_identifier_2_sil_ : MzIdentMLHandler
ppm : ChromExtractParams
ppm_ : LinearResamplerAlign , SpectrumAccessQuadMZTransforming , Tagger
ppm_error_abs_sum : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_beta : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_linear : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_linear_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_linear_beta : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_xlinks : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_xlinks_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_error_abs_sum_xlinks_beta : OPXLDataStructs::CrossLinkSpectrumMatch
ppm_tolerance_ : GaussFilterAlgorithm
pre : MzIdentMLDOMHandler::PeptideEvidence , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
pre_ : MultiGradient
pre_int_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
pre_int_H2O_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
pre_int_NH3_ : SimpleTSGXLMS , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
pre_min_ : MultiGradient
pre_moves : MappingParam
pre_release_identifier : VersionInfo::VersionDetails
pre_score : OPXLDataStructs::CrossLinkSpectrumMatch
pre_size_ : MultiGradient
pre_states_ : HMMState
pre_steps_ : MultiGradient
precision : MzMLHandlerHelper::BinaryData
precision_ : RealMassDecomposer , Weights , MzXMLHandler::SpectrumData
precisions_ : MzDataHandler
precursor : TransitionTSVFile::TSVTransition
precursor_ : ChromatogramSettings
precursor_adduct_ : SpectralMatch
precursor_charge : SpectrumMetaDataLookup::SpectrumMetaData , TransitionTSVFile::TSVTransition
precursor_charge_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , SvmTheoreticalSpectrumGenerator , TriqlerFile::TriqlerLine_
precursor_chromatogram_map_ : MRMTransitionGroup< ChromatogramType, TransitionType >
precursor_chromatograms_ : MRMTransitionGroup< ChromatogramType, TransitionType >
precursor_correction : OPXLDataStructs::CrossLinkSpectrumMatch , OPXLDataStructs::ProteinProteinCrossLink
precursor_correction_steps_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
precursor_cv_terms_ : IncludeExcludeTarget , ReactionMonitoringTransition
precursor_error_ppm : NucleicAcidSearchEngine::AnnotatedHit , OPXLDataStructs::CrossLinkSpectrumMatch
precursor_feature_map_ : MRMFeature
precursor_features_ : MRMFeature , MRMFeatureOpenMS
precursor_formula : SiriusMzTabWriter::SiriusAdapterHit
precursor_im : LightTransition
precursor_int : MetaboTargetedAssay
precursor_intensity_ : NucleicAcidSpectrumGenerator
precursor_isolation_target : ChromatogramMeta
precursor_isotopes_ : SimpleSearchEngineAlgorithm
precursor_lower_mz_ : XTandemInfile
precursor_mass : OPXLDataStructs::XLPrecursor
precursor_mass_error_unit_ : XTandemInfile
precursor_mass_tolerance : DBSearchParam , ProteinIdentification::SearchParameters
precursor_mass_tolerance_ : BinnedSharedPeakCount , BinnedSpectralContrastAngle , BinnedSumAgreeingIntensities , CompNovoIdentificationCID , InspectInfile , MascotInfile , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SequestInfile , SimpleSearchEngineAlgorithm
precursor_mass_tolerance_minus_ : XTandemInfile
precursor_mass_tolerance_plus_ : XTandemInfile
precursor_mass_tolerance_ppm : ProteinIdentification::SearchParameters
precursor_mass_tolerance_unit_ : SimpleSearchEngineAlgorithm
precursor_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
precursor_mass_type_ : XTandemInfile
precursor_max_charge_ : SimpleSearchEngineAlgorithm
precursor_min_charge_ : SimpleSearchEngineAlgorithm
precursor_mz : MetaboTargetedAssay , SpectrumMetaDataLookup::SpectrumMetaData , LightTransition
precursor_mz_ : IncludeExcludeTarget , OSWPeptidePrecursor , ReactionMonitoringTransition
precursor_mz_error_ : MetaboliteSpectralMatching
precursor_mz_selected_ion_ : PeakFileOptions
precursor_peak_ : DeconvolvedSpectrum
precursor_peak_group_ : DeconvolvedSpectrum
precursor_ref : NucleicAcidSearchEngine::AnnotatedHit
precursor_residual_peak_count : OPXLDataStructs::CrossLinkSpectrumMatch
precursor_rt : SpectrumMetaDataLookup::SpectrumMetaData
precursor_scan_number_ : DeconvolvedSpectrum
precursor_signal_proportion : OPXLDataStructs::CrossLinkSpectrumMatch
precursor_statistics_ : SpectrumAnnotator
precursor_target_intensity : OPXLDataStructs::CrossLinkSpectrumMatch
precursor_target_peak_count : OPXLDataStructs::CrossLinkSpectrumMatch
precursor_tol_ : MRMMapping
precursor_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
precursor_tolerance_ : ProteinIdentificationVisualizer
precursor_tolerance_ppm : DBSearchParam
precursor_total_intensity : OPXLDataStructs::CrossLinkSpectrumMatch
precursors_ : BinnedSpectrum , SpectrumSettings
precursorScan : IsobaricChannelExtractor::PuritySate_
prediction_ : IncludeExcludeTarget , ReactionMonitoringTransition
predictor_names_ : SimpleSVM
preferred_fixed_modifications_ : PepXMLFile
preferred_variable_modifications_ : PepXMLFile
prefix : FuzzyStringComparator::PrefixInfo_ , LogStreamBuf::StreamStruct , MzTabMDatabaseMetaData
prefix_ : PeptideIndexing
prefix_fraction : SimpleSearchEngineAlgorithm::AnnotatedHit_
prefix_whitespaces : FuzzyStringComparator::PrefixInfo_
prepared_queries_ : OMSFileStore
preprocessing : SiriusAdapterAlgorithm
preprocessing_tech : LPWrapper::SolverParam
pressure_ : HPLC
previous_rt_ : MSDataAggregatingConsumer
previous_seq_ : XTandemXMLFile
previously_deconved_mass_bins_for_dummy_ : FLASHDeconvAlgorithm
previously_deconved_mono_masses_for_dummy_ : FLASHDeconvAlgorithm
primary_files : InputFile
primary_id_ : BaseFeature , SpectralMatch
print_debug_ : EmgGradientDescent
print_duplicate_references_ : SequestInfile
prm_ : OpenSwathWorkflowBase
pro_id_ : MzIdentMLDOMHandler , MzIdentMLHandler
probabilities : SimpleSVM::Prediction
probabilities_ : PSProteinInference
probability : ProteinIdentification::ProteinGroup
proc : TOPPASScene::TOPPProcess
processing_ : MzMLHandler
processing_actions_ : DataProcessing
processing_software_keys_ : OMSFileStore
processing_software_refs : IdentificationData::RefTranslator
processing_software_refs_ : OMSFileLoad
processing_softwares_ : IdentificationData
processing_step_keys_ : OMSFileStore
processing_step_opt : AppliedProcessingStep
processing_step_refs : IdentificationData::RefTranslator
processing_step_refs_ : OMSFileLoad
processing_steps_ : IdentificationData
prod_ : IsotopeWaveletTransform< PeakType >
product : TransitionTSVFile::TSVTransition
product_ : ChromatogramSettings , ReactionMonitoringTransition
product_cv_terms_ : IncludeExcludeTarget
product_isolation_target : ChromatogramMeta
product_mz : LightTransition
product_mz_ : IncludeExcludeTarget , OSWTransition , ProductVisualizer
product_tol_ : MRMMapping
product_window_low_ : ProductVisualizer
product_window_up_ : ProductVisualizer
products_ : SpectrumSettings
prog_log_ : FeatureFinderIdentificationAlgorithm , FeatureFinderMultiplexAlgorithm
progress_ : FeatureFinderMultiplexAlgorithm , FeatureGroupingAlgorithmKD , ConsensusXMLHandler , QcMLFile
progress_counter_ : FeatureFinderAlgorithmIsotopeWavelet
project : SiriusAdapterAlgorithm
projection_box_ : Plot2DWidget
projection_max_ : Plot2DWidget
projection_onto_X_ : Plot2DWidget
projection_onto_Y_ : Plot2DWidget
projection_ontoX : LayerDataDefs::ProjectionData
projection_ontoY : LayerDataDefs::ProjectionData
projection_peaks_ : Plot2DWidget
projection_sum_ : Plot2DWidget
projections_2d_ : TOPPViewBase
projections_auto_ : Plot2DWidget
projections_timer_ : Plot2DWidget
properties_B_ : GridBasedCluster
property_A_ : GridBasedCluster
prot_acc : PSLPFormulation::IndexTriple
prot_acc_to_indist_prot_grp_ : PeptideProteinResolution
prot_grp_indices : ConnectedComponent
prot_hit_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler
prot_id_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler , PepXMLFile , ProtXMLFile
prot_id_counter_ : PrecursorIonSelection
prot_id_in_run_ : IdXMLFile
prot_idents : IDRipper::RipFileContent
prot_ids_ : IdXMLFile , XQuestResultXMLHandler , MzTab::CMMzTabStream , MzTab::IDMzTabStream
prot_masses_ : PrecursorIonSelectionPreprocessing
prot_peptide_seq_map_ : PrecursorIonSelectionPreprocessing
prot_quant_ : PeptideAndProteinQuant
prot_result_ : IDMergerAlgorithm
protein_abundance_assay : MzTabProteinSectionRow
protein_abundance_std_error_study_variable : MzTabProteinSectionRow
protein_abundance_stdev_study_variable : MzTabProteinSectionRow
protein_abundance_study_variable : MzTabProteinSectionRow
protein_count : TargetedExperiment::SummaryStatistics
protein_data_ : MzTab , ProteinResolver
protein_entries : ProteinResolver::ResolverResult
protein_group_ : ProtXMLFile
protein_groups_ : ProteinIdentification
protein_hit_scores_mean : IdentificationSummary::Result
protein_hit_user_value_keys_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
protein_hits_ : ProteinIdentification , XTandemXMLFile
protein_identification_ : MascotXMLHandler , XTandemXMLFile
protein_identifications_ : ConsensusMap , ExperimentalSettings , FeatureMap
protein_mass_filter_ : SequestInfile
protein_name_length_ : InspectOutfile
protein_names : MQExporterHelper::MQCommonOutputs
protein_quantification_unit : MzTabMetaData
protein_reference_map_ : TargetedExperiment
protein_reference_map_dirty_ : TargetedExperiment
protein_refs : Peptide , LightCompound
protein_score_type_ : ProteinIdentification
protein_search_engine_score : MzTabMetaData
protein_significance_threshold_ : ProteinIdentification
protein_table_widget_ : SpectraIDViewTab
protein_to_peptide_id_map : SpectraIDViewTab
protein_type : ProteinResolver::ProteinEntry
protein_uids_ : XTandemXMLFile
proteinhit_accession_ : ProteinHitVisualizer
proteinhit_rank_ : ProteinHitVisualizer
proteinhit_score_ : ProteinHitVisualizer
proteinhit_sequence_ : ProteinHitVisualizer
proteinid_to_accession_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler
ProteinName : TransitionTSVFile::TSVTransition
proteins : ProteinResolver::ISDGroup , ProteinResolver::MSDGroup , ProteinResolver::PeptideEntry , LightTargetedExperiment , TargetedExperiment
proteins_ : OSWData , PepXMLFile , TargetedExperiment
protIDs_ : IDBoostGraph
prt_group_id_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
prt_hit_id_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
prt_indistgroup_id_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
prt_optional_column_names_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
prt_run_id_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
PRT_STATE_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
pseudo_counts_ : HiddenMarkovModel
psi_ : IsotopeWaveletTransform< PeakType >
psi_id_ : DigestionEnzymeProtein
psi_mod_accession_ : ResidueModification
psm_count : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
psm_counts : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
psm_data_ : MzTab
PSM_ID : MzTabPSMSectionRow
psm_id_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
psm_optional_column_names_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
psm_score_cutoff_ : FeatureFinderIdentificationAlgorithm
psm_search_engine_score : MzTabMetaData
pt_prot_map_ : PrecursorIonSelectionPreprocessing
ptm_file_ : PepNovoInfile
ptm_informations_ : PTMXMLHandler
PTMname_residues_mass_type_ : InspectInfile , SequestInfile
ptr_ : BaseVisualizer< ObjectType >
ptr_to_spin_box : TheoreticalSpectrumGenerationDialog::CheckBox
ptr_to_spin_label : TheoreticalSpectrumGenerationDialog::CheckBox
pubchemids : CsiFingerIdMzTabWriter::CsiAdapterHit
publication : MzTabMetaData , MzTabMMetaData
publications_ : TargetedExperiment
pv_db_map_ : MzIdentMLDOMHandler
pw_filtering_ : ElutionPeakDetection