- s -

s_bion : CompNovoIonScoringBase::IonScore
s_isotope_pattern_1 : CompNovoIonScoringBase::IonScore
s_isotope_pattern_2 : CompNovoIonScoringBase::IonScore
s_list : MSDataAggregatingConsumer
s_tmp : MSDataAggregatingConsumer
s_witness : CompNovoIonScoringBase::IonScore
s_yion : CompNovoIonScoringBase::IonScore
sample : ExperimentalDesign::MSFileSectionEntry , MzTabMetaData , MzTabMMetaData
sample_ : ExperimentalSettings
sample_name : AbsoluteQuantitationStandards::runConcentration , ExperimentalDesign::MSFileSectionEntry
sample_processing : MzTabMetaData , MzTabMMetaData
sample_ref : MzTabAssayMetaData , MzTabMAssayMetaData
sample_refs : MzTabStudyVariableMetaData
sample_section_ : ExperimentalDesign
sample_to_rowindex_ : ExperimentalDesign::SampleSection
samplecomment_ : SampleVisualizer
sampleconcentration_ : SampleVisualizer
samplemass_ : SampleVisualizer
samplename_ : SampleVisualizer
samplenumber_ : SampleVisualizer
sampleorganism_ : SampleVisualizer
samples_ : FIAMSScheduler , MzMLHandler
samples_labels_ : MultiplexDeltaMassesGenerator
samplestate_ : SampleVisualizer
samplevolume_ : SampleVisualizer
sampling_points_per_FWHM_ : RawMSSignalSimulation
satellites_ : MultiplexFilteredPeak
satellites_profile_ : MultiplexFilteredPeak
saveallbutton_ : MetaDataBrowser
sc_charge_ : ProtonDistributionModel
sc_charge_full_ : ProtonDistributionModel
sc_charge_ion_c_term_ : ProtonDistributionModel
sc_charge_ion_n_term_ : ProtonDistributionModel
scale_ : ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration , EuclideanSimilarity , LinearInterpolation< Key, Value > , PeakPickerCWT , ProductModel< 2 >
scale_0_ : BilinearInterpolation< Key, Value >
scale_1_ : BilinearInterpolation< Key, Value >
scaling_ : InterpolationModel , SimpleSVM
scaling_lower : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
scaling_upper : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
scan : PSLPFormulation::IndexTriple
scan_count_ : MzMLHandler , MzXMLHandler
scan_count_total_ : MzMLHandler
scan_dir_ : MassAnalyzerVisualizer
scan_direction_ : MassAnalyzer
scan_event_number : Ms2SpectrumStats::ScanEvent
scan_idx : MassTraceDetection::Apex
scan_index : NucleicAcidSearchEngine::PrecursorInfo , CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification
scan_index_heavy : OPXLDataStructs::CrossLinkSpectrumMatch
scan_index_light : OPXLDataStructs::CrossLinkSpectrumMatch
scan_indices : SiriusMSFile::CompoundInfo
scan_law_ : MassAnalyzer , MassAnalyzerVisualizer
scan_map_ : PepXMLFile
scan_mode_ : InstrumentSettings , TOPPViewBase
scan_number : CsiFingerIdMzTabWriter::CsiAdapterIdentification , FLASHDeconvHelperStructs::MassFeature , SiriusMzTabWriter::SiriusAdapterIdentification , SpectrumMetaDataLookup::SpectrumMetaData
scan_number_ : DeconvolvedSpectrum , PeakGroup
scan_polarity : MzTabMMSRunMetaData
scan_rate_ : MassAnalyzer , MassAnalyzerVisualizer
scan_regexp_ : SpectrumLookup
scan_time_ : MassAnalyzer , MassAnalyzerVisualizer
scan_windows_ : InstrumentSettings
scannr_ : PepXMLFile
scans : IsotopeCluster
scans_ : SpectrumLookup
scene_ : TOPPASWidget
schema_location_ : XMLFile , ParamCTDFile
schema_version_ : MzIdentMLDOMHandler , XMLFile , ParamCTDFile
scope_path_ : CVMappingRule
score : CompNovoIonScoringBase::IonScore , CsiFingerIdMzTabWriter::CsiAdapterHit , DeNovoIonScoring::IonScore , FeatureFinderAlgorithmIsotopeWavelet::BoxElement , IDFilter::HasGoodScore< HitType > , IDBoostGraph::ProteinGroup , IsotopeWaveletTransform< PeakType >::BoxElement , MorpheusScore::Result , OPXLDataStructs::CrossLinkSpectrumMatch , OSWFile::PercolatorFeature , RNPxlReportRow , SimpleSearchEngineAlgorithm::AnnotatedHit_ , TargetedSpectraExtractor::Match
score_ : ChargePair , CompNovoIdentificationBase::Permut , PeptideHit , ProteinHit
score_clas_pairs_ : ROCCurve
score_cutoff_ : MapAlignmentAlgorithmIdentification
score_type : PeptideHit::PepXMLAnalysisResult
score_type_ : InspectOutfile , MapAlignmentAlgorithmIdentification , PeptideIdentification , PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
score_type_keys_ : OMSFileStore
score_type_names : PercolatorOutfile
score_type_refs : IdentificationData::RefTranslator
score_type_refs_ : OMSFileLoad
score_types_ : IdentificationData
score_weights : MRMFeatureSelector::SelectorParameters
scoredistribution_ : MapAlignmentAlgorithmSpectrumAlignment
scores : ConsensusIDAlgorithm::HitInfo , AppliedProcessingStep , ParentGroup
scores_ : IsotopeWaveletTransform< PeakType >
scoring_model_ : MRMFeatureFinderScoring
sd_map_ : MzIdentMLDOMHandler
search_database_ref : MzIdentMLDOMHandler::SpectrumIdentification
search_engine : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
search_engine_ : MzIdentMLDOMHandler , PepXMLFile , ProteinIdentification
search_engine_identifier : AccurateMassSearchEngine
search_engine_score : MzTabOSMSectionRow , MzTabPSMSectionRow
search_engine_score_ms_run : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
search_engine_version_ : MzIdentMLDOMHandler , ProteinIdentification
search_id_ : PepXMLFile
search_identifier_ : MascotRemoteQuery
search_param_ : ConsensusXMLHandler , FeatureXMLHandler
search_param_keys_ : OMSFileStore
search_param_refs : IdentificationData::RefTranslator
search_param_refs_ : OMSFileLoad
search_parameters_ : MascotXMLHandler , ProteinIdentification
search_score_ : TriqlerFile::TriqlerLine_
search_score_summary_ : PepXMLFile
search_summary_ : PepXMLFile
search_title_ : MascotInfile
search_type_ : MascotInfile
searched_mass_ : AccurateMassSearchResult
searchtype : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
second : ProbablePhosphoSites , TransformationModel::DataPoint
second_nearest_gap_ : StablePairFinder
second_row_ : NeedlemanWunsch
secondary_id_ : SpectralMatch
secondary_types : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
seed_ : UniqueIdGenerator
seed_rt_window_ : FeatureFinderIdentificationAlgorithm
seeds_ : FeatureFinderAlgorithmPicked
seen_experiment_ : PepXMLFile
segment_step_length : MRMFeatureSelector::SelectorParameters
segment_window_length : MRMFeatureSelector::SelectorParameters
select_transition_group : MRMFeatureSelector::SelectorParameters
selected_ : Annotation1DItem , MultiGradientSelector
selected_activation_ : IsobaricChannelExtractor
selected_color_ : MultiGradientSelector
selected_ion_count_ : MzMLHandler
selected_peak_ : Plot2DCanvas , PlotCanvas
selected_pen_ : Annotations1DContainer
selection_view_ : TOPPViewBase
selector_ : MRMFeatureSelector_test
semi_cleavage_ : XTandemInfile
sep_ : MzTabStringList , SVOutStream , CSVWriter
seq_ : FASTAFile , NASequence , OSWPeptidePrecursor
seq_1 : ProbablePhosphoSites
seq_2 : ProbablePhosphoSites
seq_type_ : TheoreticalSpectrumGenerationDialog
sequence : NucleicAcidSearchEngine::AnnotatedHit , FASTAFile::FASTAEntry , IdentifiedSequence< SeqType > , ParentSequence , MzIdentMLDOMHandler::DBSequence , MzTabOligonucleotideSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabPSMSectionRow , ProteinResolver::PeptideEntry , SimpleSearchEngineAlgorithm::AnnotatedHit_ , Peptide , Protein , LightCompound , LightProtein , Peptide , Protein
sequence_ : IMSElement , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , PeptideHit , ProteinHit , TriqlerFile::TriqlerLine_
sequence_header_filter_ : SequestInfile
sequence_tag_min_length_ : OpenPepXLLFAlgorithm
sequences : SVMData
sequences_ : PrecursorIonSelectionPreprocessing
seriesposition_regex_ : SpectrumAnnotator
server_path_ : MascotRemoteQuery
set : EGHFitter1D::Data , EmgFitter1D::Data
set_Name_ID_map_ : QcMLFile
set_to_zero_ : ParentPeakMower
setQualityAts_ : QcMLFile
setQualityQPs_ : QcMLFile
setQualityQPs_members_ : QcMLFile
setting : MzTabSoftwareMetaData
settings_ : FullSwathFileConsumer , MSDataWritingConsumer
sf : RawMSSignalSimulation::ContaminantInfo
sf_accession : SiriusMSFile::AccessionInfo
sf_filename : SiriusMSFile::AccessionInfo
sf_path : SiriusMSFile::AccessionInfo
sf_type : SiriusMSFile::AccessionInfo
sgfilter_ : FIAMSDataProcessor
sgolay_ : PeakPickerMRM
sgolay_frame_length_ : PeakPickerMRM
sgolay_polynomial_order_ : PeakPickerMRM
shape : RawMSSignalSimulation::ContaminantInfo
shift : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
short_name : MultiplexDeltaMassesGenerator::Label
show_alignment_ : Plot1DCanvas
show_fragment_ions_ : SequestInfile
show_grid_ : PlotCanvas
show_legend_ : AxisWidget
show_splitters_ : HistogramWidget
show_timing_ : PlotCanvas
shuffler_ : ConfidenceScoring , DecoyGenerator , RANSAC< TModelType > , SVMWrapper
si_map_ : MzIdentMLDOMHandler
si_pro_map_ : MzIdentMLDOMHandler
sidx_ : SpectrumAccessSqMass
sigma : GaussFitter::GaussFitResult
sigma_ : EGHTraceFitter , GaussFilterAlgorithm , GaussTraceFitter , IsotopeWaveletTransform< PeakType > , PrecursorIonSelectionPreprocessing , SVMWrapper
sigma_5_bound_ : EGHTraceFitter
sigma_square_ : EGHFitter1D , EGHModel
sigma_square_2_ : EGHModel
sigmas_ : SVMWrapper
signal : OptimizePeakDeconvolution::Data , OptimizePick::Data , TwoDOptimization::Data
signal2D : TwoDOptimization::Data
signal_ : ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration
signal_length_ : ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration
signal_proportion : PrecursorPurity::PurityScores
signal_to_noise : PeakShape
signal_to_noise_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm , PeakPickerCWT , PeakPickerHiRes , PeakPickerIterative , PeakPickerMaxima , PeakPickerMRM
signal_weight : PSLPFormulation::IndexTriple
significance_threshold_ : PeptideIdentification
sil_2_sdat_ : MzIdentMLHandler
sil_2_sdb_ : MzIdentMLHandler
sil_2_sip_ : MzIdentMLHandler
similarities_ : ConsensusIDAlgorithmSimilarity
simulators_ : SvmTheoreticalSpectrumGeneratorSet
sine_table_ : IsotopeWavelet
single_mobilogram_ : LayerDataIonMobility
singleMass_ : Adduct
singletonRegistryInstance_ : SingletonRegistry
sirius : SiriusAdapterAlgorithm
sirius_score : SiriusMzTabWriter::SiriusAdapterHit
site : MzTabModificationMetaData
sites_ : UnimodXMLHandler
size : ConsensusMap::ColumnHeader
SIZE : IMSIsotopeDistribution
size : IDBoostGraph::ProteinGroup , MzMLHandlerHelper::BinaryData
size_ : ClusterProxyKD , StringView
size_only_ : FeatureFileOptions , FeatureXMLHandler
size_proportions_ : SaveImageDialog
size_ratio_ : SaveImageDialog
size_x_ : SaveImageDialog
size_y_ : SaveImageDialog
skip_chromatogram_ : MzMLHandler
skip_data : MzXMLHandler::SpectrumData
skip_protein_acc_update_ : XTandemXMLFile
skip_spectrum_ : MzDataHandler , MzMLHandler , MzXMLHandler
skip_xml_checks_ : IndexedMzMLHandler , MzMLSpectrumDecoder , PeakFileOptions
slope_ : LinearRegression , TransformationModelLinear
slope_bound_ : FeatureFinderAlgorithmPicked
slope_max_ : TransformationModelBSpline
slope_min_ : TransformationModelBSpline
slope_of_baseline : PeakIntegrator::PeakShapeMetrics
sm_ : XMLHandler
small_molecule_abundance_assay : MzTabMSmallMoleculeSectionRow
small_molecule_abundance_study_variable : MzTabMSmallMoleculeSectionRow
small_molecule_abundance_variation_study_variable : MzTabMSmallMoleculeSectionRow
small_molecule_data_ : MzTab
small_molecule_feature_abundance_assay : MzTabMSmallMoleculeFeatureSectionRow
small_molecule_feature_quantification_unit : MzTabMMetaData
small_molecule_identification_reliability : MzTabMMetaData
small_molecule_quantification_unit : MzTabMetaData , MzTabMMetaData
smallest_score_ : PosteriorErrorProbabilityModel
smallmolecule_abundance_assay : MzTabSmallMoleculeSectionRow
smallmolecule_abundance_std_error_study_variable : MzTabSmallMoleculeSectionRow
smallmolecule_abundance_stdev_study_variable : MzTabSmallMoleculeSectionRow
smallmolecule_abundance_study_variable : MzTabSmallMoleculeSectionRow
smallmolecule_search_engine_score : MzTabMetaData
sme_id_ref_ambiguity_code : MzTabMSmallMoleculeFeatureSectionRow
sme_id_refs : MzTabMSmallMoleculeFeatureSectionRow
sme_identifier : MzTabMSmallMoleculeEvidenceSectionRow
sme_optional_column_names_ : MzTabM
smf_id_refs : MzTabMSmallMoleculeSectionRow
smf_identifier : MzTabMSmallMoleculeFeatureSectionRow
smf_optional_column_names_ : MzTabM
smile : IdentifiedCompound
smiles : CsiFingerIdMzTabWriter::CsiAdapterHit , MzTabMSmallMoleculeEvidenceSectionRow , MzTabMSmallMoleculeSectionRow , MzTabSmallMoleculeSectionRow
SMILES : TransitionTSVFile::TSVTransition
smiles_string : Compound
smiles_string_ : SpectralMatch
sml_identifier : MzTabMSmallMoleculeSectionRow
sml_optional_column_names_ : MzTabM
smoothed_intensities_ : MassTrace
sn_ : SignalToNoiseOpenMS< ContainerT >
sn_bin_count_ : MRMFeatureFinderScoring , PeakPickerIterative , PeakPickerMRM
sn_ratio : OpenSwath_Scores
SN_statistics_ : SpectrumAnnotator
sn_win_len_ : MRMFeatureFinderScoring , PeakPickerIterative , PeakPickerMRM
sn_window_length_ : PeakPickerMaxima
snap_factors_ : PlotCanvas
snd_database_ : SequestInfile
snr_ : PeakGroup
snr_weight_ : TargetedSpectraExtractor
snt_ : PeakPickerMRM
software : MzTabMetaData , MzTabMMetaData , MzTabSoftwareMetaData
software_ : DataProcessing , Instrument , MzMLHandler , TargetedExperiment
software_name_ : SoftwareVisualizer
software_ref : ProcessingStep , Prediction , RetentionTime
software_version_ : SoftwareVisualizer
solver_ : IsotopeWavelet , LPWrapper , OfflinePrecursorIonSelection , PrecursorIonSelection , PSLPFormulation , PSProteinInference
sonar_ : OpenSwathOSWWriter , OpenSwathTSVWriter
sonar_diff : OpenSwath_Scores
sonar_lag : OpenSwath_Scores
sonar_rsq : OpenSwath_Scores
sonar_shape : OpenSwath_Scores
sonar_sn : OpenSwath_Scores
sonar_trend : OpenSwath_Scores
sonarscoring_ : MRMFeatureFinderScoring
sort_by_position_ : TheoreticalSpectrumGenerator
sort_chromatograms_by_rt_ : PeakFileOptions
sort_spectra_by_mz_ : PeakFileOptions
sorted_ : ROCCurve
source : MzTabInstrumentMetaData
source_feature_index_ : AccurateMassSearchResult
source_file : SiriusMSFile::CompoundInfo
source_file_ : ChromatogramSettings , OSWData , SpectrumSettings
source_files_ : ExperimentalSettings , MzMLHandler , TargetedExperiment
source_format : SiriusMSFile::CompoundInfo
source_out_param_ : TOPPASEdge
sp_ : EnhancedTabBarWidgetInterface
sp_map_ : MzIdentMLDOMHandler
spacer_ : Plot1DWidget
spacing_ : ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration , GaussFilter , GaussFilterAlgorithm , LinearResampler
spacing_difference_ : PeakPickerHiRes , PeakPickerIterative , PeakPickerMaxima
spacing_difference_gap_ : PeakPickerHiRes , PeakPickerMaxima
spacing_for_spectra_resampling_ : MRMFeatureFinderScoring , OpenSwathScoring
sparse_window_percent_ : SignalToNoiseEstimatorMedian< Container >
spawns : ACTrieState
spec_ : DeconvolvedSpectrum , MzDataHandler , MzMLHandler , MSSpectrum::Chunks , TheoreticalSpectrumGenerationDialog
spec_gen_dialog_ : TOPPViewBase
spec_id_ : MzMLSqliteHandler , MzMLSqliteSwathHandler
spec_id_view_ : TVIdentificationViewController
spec_ref_ : MzTabSpectraRef
spec_write_counter_ : MzXMLHandler
species : MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSampleMetaData , MzTabSmallMoleculeSectionRow
specificities : MzIdentMLDOMHandler::ModificationParam
specificity_ : EnzymaticDigestion
specificity_type_ : Modification
specref_format : SiriusMSFile::CompoundInfo
specrefs : SiriusMSFile::CompoundInfo
spectra_ : InspectInfile , MSDataSqlConsumer , MSExperiment , SpectrumAccessOpenMSInMemory
spectra_addition_method_ : OpenSwathScoring
spectra_all_peaks : OPXLDataStructs::PreprocessedPairSpectra
spectra_before_chroms_ : IndexedMzMLHandler
spectra_combo_box_ : DIATreeTab , SpectraTreeTab
spectra_data : IDRipper::IdentificationRuns
spectra_data_ref : MzIdentMLDOMHandler::SpectrumIdentification , SpectrumMetaDataLookup
spectra_expected_ : MSDataWritingConsumer
spectra_index_ : CachedmzML , CachedMzMLHandler
spectra_linear_peaks : OPXLDataStructs::PreprocessedPairSpectra
spectra_meta_ : SpectrumAccessOpenMSInMemory
spectra_native_ids_ : IndexedMzMLHandler , OnDiscMSExperiment
spectra_offsets_ : IndexedMzMLHandler , MzMLHandler
spectra_ref : MzTabMSmallMoleculeEvidenceSectionRow , MzTabOSMSectionRow , MzTabPeptideSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
spectra_search_box_ : DIATreeTab , SpectraTreeTab
spectra_treewidget_ : SpectraTreeTab
spectra_view_widget_ : DataSelectionTabs
spectra_written_ : MSDataCachedConsumer , MSDataWritingConsumer
spectra_xlink_peaks : OPXLDataStructs::PreprocessedPairSpectra
spectraview_controller_ : DataSelectionTabs
spectrum : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern , FeatureFinderAlgorithmPickedHelperStructs::Seed , MzMLHandler::SpectrumData , MzXMLHandler::SpectrumData , MetaboTargetedAssay::CompoundSpectrumPair , PeakIndex , TargetedSpectraExtractor::Match
spectrum_addition_method_ : MRMFeatureFinderScoring
spectrum_data_ : MzMLHandler , MzXMLHandler
spectrum_identification_list_ref : MzIdentMLDOMHandler::SpectrumIdentification
spectrum_identification_protocol_ref : MzIdentMLDOMHandler::SpectrumIdentification
spectrum_identifications_ : Identification
spectrum_ids_ : XTandemXMLFile
spectrum_index_heavy_ : XQuestResultXMLHandler
spectrum_index_light_ : XQuestResultXMLHandler
spectrum_input_file_ : XQuestResultXMLHandler
spectrum_widget_ : LayerListView , PlotCanvas
spline_ : BSpline2d , SplinePackage , TransformationModelBSpline
sptr : SwathMap
sptr_ : SpectrumAccessTransforming
sql_batch_size_ : MzMLSqliteHandler
sqrt2pi : EmgFitter1D::EgmFitterFunctor
sqrt_2 : EmgFitter1D::EgmFitterFunctor
sr_map_ : MzIdentMLDOMHandler
src : RangeStatsType
ss_ : SVOutStream
st_ : Annotation1DCaret< DataPoint >
stack_ : Param::ParamIterator
stand_dev_residuals_ : LinearRegression
stand_error_slope_ : LinearRegression
start : FeatureFinderIdentificationAlgorithm::RTRegion , MzIdentMLDOMHandler::PeptideEvidence , MSSpectrum::Chunk , MzTabOligonucleotideSectionRow , MzTabPSMSectionRow
start_ : PeptideEvidence
start_point_ : Annotation1DDistanceItem
start_pos : ParentMatch
start_position_at_10 : PeakIntegrator::PeakShapeMetrics
start_position_at_5 : PeakIntegrator::PeakShapeMetrics
start_position_at_50 : PeakIntegrator::PeakShapeMetrics
start_time : StopWatch::TimeDiff_
start_time_usec : StopWatch::TimeDiff_
started_writing_ : MSDataWritingConsumer
state : TheoreticalSpectrumGenerationDialog::CheckBox
state_ : MzTabDouble , MzTabInteger , Sample
states : AnnotationStatistics
states_ : HiddenMarkovModel
static_intensities : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
statistics1_ : BiGaussFitter1D , BiGaussModel
statistics2_ : BiGaussFitter1D , BiGaussModel
statistics_ : EGHModel , EmgModel , Fitter1D , GaussModel , PeptideProteinResolution
stats : LayerDataDefs::ProjectionData
stats_ : IsobaricQuantifier , LayerStatisticsDialog , PeptideAndProteinQuant
status_ : PepXMLFile , TOPPASToolVertex
status_list_ : MetaDataBrowser
stdev_ : SignalToNoiseEstimatorMeanIterative< Container >
steps_and_scores : ScoredProcessingResult
stickdata_ : Plot3DOpenGLCanvas
stn_estimates_ : SignalToNoiseEstimator< Container >
stop : MzIdentMLDOMHandler::PeptideEvidence
stop_after_feature_ : MRMTransitionGroupPicker
stop_after_intensity_ratio_ : MRMTransitionGroupPicker
stop_condition_ : FineIsotopePatternGenerator
stop_report_after_feature_ : MRMFeatureFinderScoring
storage_formats_ : LayerStoreData
store_ : DataMatrix
store_compact_ : MascotGenericFile
store_nucleic_acid_goterms_ : MzTabFile
store_nucleic_acid_reliability_ : MzTabFile
store_nucleic_acid_uri_ : MzTabFile
store_oligonucleotide_reliability_ : MzTabFile
store_oligonucleotide_uri_ : MzTabFile
store_osm_reliability_ : MzTabFile
store_osm_uri_ : MzTabFile
store_peptide_reliability_ : MzTabFile
store_peptide_uri_ : MzTabFile
store_protein_goterms_ : MzTabFile
store_protein_reliability_ : MzTabFile
store_protein_uri_ : MzTabFile
store_psm_reliability_ : MzTabFile
store_psm_uri_ : MzTabFile
store_smallmolecule_reliability_ : MzTabFile
store_smallmolecule_uri_ : MzTabFile
strarray_ : TransitionTSVFile
stream : LogStreamBuf::StreamStruct
stream_ : IndentedStream , IDBoostGraph::PrintAddressVisitor< CharT > , LogStreamNotifier
stream_at_end_ : Bzip2Ifstream , GzipIfstream
stream_list_ : LogStreamBuf
stream_type_map_ : LogConfigHandler
strict_ : MRMFeatureFinderScoring
string_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
strip_namespaces_ : CVMappingFile
struct_size_in_datapoints_ : MorphologicalFilter
study_variable : MzTabMetaData , MzTabMMetaData
stw_ : WizardGUILock< TWidgetClass >
su_ : MRMFeatureFinderScoring , OpenSwathScoring
sub_index : FeatureFinderAlgorithmMetaboIdent::MassTraceBounds
sub_scores : PeptideHit::PepXMLAnalysisResult
subordinate_feature_level_ : FeatureXMLHandler
subordinates_ : Feature
subquery_score_ : OMSFileLoad
subsamples_ : Sample
subsections_ : DefaultParamHandler , TOPPBase
subsections_TOPP_ : TOPPBase
subspec_to_sequences_ : CompNovoIdentificationBase
succ_states_ : HMMState
success : DecoyHelper::Result , FalseDiscoveryRate::DecoyStringHelper::Result
suffix : ACNode
suffix_fraction : SimpleSearchEngineAlgorithm::AnnotatedHit_
suit_ : DBSuitability_friend
suitability : DBSuitability::SuitabilityData
suitability_corr : DBSuitability::SuitabilityData
suitability_corr_no_rerank : DBSuitability::SuitabilityData
suitability_no_rerank : DBSuitability::SuitabilityData
sum_ : AsymmetricStatistics< RealT > , BasicStatistics< RealT > , RangeStats< VALUE_TYPE >
sum_formula : LightCompound
sum_formula_ : SpectralMatch
sum_intensity : LayerDataDefs::ProjectionData::Summary
sum_xx_ : LinearRegressionWithoutIntercept
sum_xy_ : LinearRegressionWithoutIntercept
SumFormula : TransitionTSVFile::TSVTransition
superimposer_ : MapAlignmentAlgorithmPoseClustering
support : ConsensusIDAlgorithm::HitInfo
supported_schemes : TOPPASResource
supported_types_ : LayerAnnotatorBase
svm_feat_centers_ : FeatureFindingMetabo
svm_feat_scales_ : FeatureFindingMetabo
svm_min_prob_ : FeatureFinderIdentificationAlgorithm
svm_n_parts_ : FeatureFinderIdentificationAlgorithm
svm_n_samples_ : FeatureFinderIdentificationAlgorithm
svm_params_ : SimpleSVM
svm_predictor_names_ : FeatureFinderIdentificationAlgorithm
svm_probs_external_ : FeatureFinderIdentificationAlgorithm
svm_probs_internal_ : FeatureFinderIdentificationAlgorithm
svm_quality_cutoff : FeatureFinderIdentificationAlgorithm
svm_xval_out_ : FeatureFinderIdentificationAlgorithm
swath_assay_ : PepXMLFile
swath_consumers_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
swath_map_boundaries_ : FullSwathFileConsumer
swath_maps_ : FullSwathFileConsumer
swath_param_ : SwathTabWidget
swath_param_wizard_ : SwathTabWidget
symbol_ : Element
symbols_ : ElementDB
symmetric_ : LevMarqFitter1D , TransformationModelLinear
symmetry_ : EmgFitter1D , EmgModel
synonym_trans_ : HiddenMarkovModel
synonym_trans_names_ : HiddenMarkovModel
synonyms : ControlledVocabulary::CVTerm
synonyms_ : DigestionEnzyme , MSPGenericFile , Residue , ResidueModification
synonyms_separator_ : MSPGenericFile