- p -

• P : BALL::Rotamer
• p : BALL::TCircle3< T > , BALL::TPlane3< T > , BALL::TSphere3< T > , BALL::TLine3< T > , BALL::TriangulatedSphere::Face
• P_ : BALL::RingPerceptionProcessor
• p_ : BALL::QSAR::LibsvmModel
• p_i_ : BALL::ConjugateGradientMinimizer
• p_t_ : BALL::ConjugateGradientMinimizer
• pair_charges_ : BALL::GeneralizedBornModel
• pair_distances_ : BALL::GeneralizedBornModel
• pair_items : BALL::CIFFile::SaveFrame
• pair_list_ : BALL::GeneralizedBornModel
• par1 : BALL::QSAR::Kernel
• par2 : BALL::QSAR::Kernel
• param : BALL::QSAR::LibsvmModel::svm_model
• parameterDefaults : BALL::QSAR::RegistryEntry
• parameterNames : BALL::QSAR::RegistryEntry
• parameters_ : BALL::ShiftModel2D , BALL::ShiftModule , BALL::QSAR::LibsvmModel , BALL::ClaverieParameter , BALL::ForceField , BALL::MMFF94OutOfPlaneBend , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::MMFF94Torsion , BALL::ShiftModel , BALL::ShiftModel1D
• parameters_by_row_ : BALL::MMFF94StretchBendParameters
• parameters_initialized_ : BALL::AmberFF , BALL::CharmmFF , BALL::MMFF94
• parent : BALL::HashGridBox3< Item > , BALL::GAFFCESParser::CESPredicate , BALL::AssignBondOrderProcessor::Solution_
• parent_ : BALL::Composite , BALL::NMRStarFile::NMRAtomDataSet , BALL::ResourceEntry , BALL::ConnectedToPredicate::CTPNode , BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::VIEW::AtomOverview , BALL::VIEW::BondProperties , BALL::VIEW::PubChemDialogPrivate::DownloadHelper , BALL::VIEW::ConnectionObject
• PARENT_DIRECTORY : BALL::FileSystem
• parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
• parents_ : BALL::RingPerceptionProcessor
• parity : BALL::MOLFile::AtomStruct
• pars_ : BALL::Bruker1DFile
• PARSE_INI_FILE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• PARSE_PARTIAL_CHARGES : BALL::PDBFile::Option , BALL::PDBFile::Default
• parse_partial_charges_ : BALL::PDBFile
• parser_ : BALL::GAFFCESParser::CESPredicate
• parsf1_ : BALL::Bruker2DFile
• parsf2_ : BALL::Bruker2DFile
• partial_charge : BALL::PDB::RecordATOM
• partner_atom : BALL::PDB::RecordSLTBRG
• partner_id : BALL::Kekuliser::AtomInfo
• partner_residue : BALL::PDB::RecordSSBOND
• partner_type_to_htype_ : BALL::MMFF94AtomTyper
• past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• paste_action_ : BALL::VIEW::MolecularControl
• paste_id_ : BALL::VIEW::MolecularControl
• path_ : BALL::Path , BALL::SimpleDownloaderHelper::HelperThread
• path_array_ : BALL::Path
• path_array_valid_ : BALL::Path
• PATH_SEPARATOR : BALL::FileSystem
• pattern_ : BALL::RegularExpression
• pause_ : BALL::DockingAlgorithm
• pbcis_ : BALL::MMFF94ESParameters
• pbuf_ : BALL::LogStreamBuf
• pcd_ : BALL::VIEW::PubChemDialog
• pcm_ : BALL::NonpolarSolvation
• pcount : BALL::TriangulatedSphere::Face
• PDB_atom_map_ : BALL::PDBFile
• pdb_id : BALL::PDB::AdditionalAtomInfo
• peak_list_ : BALL::Experiment< PeakListType >
• peak_set_ : BALL::GeometricFit
• peaklist_ : BALL::CreateSpectrumProcessor
• peaks_ : BALL::ShiftModel1D , BALL::ShiftModel2D
• peeling_order_ : BALL::RingAnalyser
• penalties_ : BALL::AssignBondOrderProcessor
• PENALTY_MOBILE : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• PENALTY_STATIC : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• period_ : BALL::Element
• periodic_boundary : BALL::ForceField
• PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• phase : BALL::AmberTorsion::SingleAmberTorsion , BALL::CharmmTorsion::SingleCharmmTorsion , BALL::CosineTorsion::SingleValues , BALL::QuadraticImproperTorsion::Values
• phi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
• phi_grid : BALL::FDPB
• PHI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• PHI_MIN : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• phis_ : BALL::MMFF94ESParameters
• PI : BALL::Constant
• pick_select_ : BALL::VIEW::Scene
• picking_action_ : BALL::VIEW::Scene
• picking_mode_ : BALL::VIEW::GLRenderer
• pilp : BALL::MMFF94AtomType
• pitch : BALL::VIEW::FrameBufferFormat
• pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
• pixelFormat : BALL::VIEW::FrameBufferFormat
• pixmap_ : BALL::VIEW::CanvasWidget::PixmapItem
• planBackward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• planCalculated_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• PLANCK : BALL::Constant
• plane_ : BALL::VIEW::SetClippingPlane
• plane_to_item_ : BALL::VIEW::GeometricControl
• planForward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• plus_ : BALL::DSN6File
• pm_ : BALL::Client , BALL::ObjectCreator
• point : BALL::RSComputer::ProbePosition , BALL::SESSingularityCleaner::ProbeIntersection
• point_ : BALL::TBox3< T > , BALL::SASVertex , BALL::SESVertex , BALL::TrianglePoint , BALL::SESTriangulator , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
• point_ptr_ : BALL::VIEW::Sphere
• pointer_list_ : BALL::PersistenceManager
• pointer_map_ : BALL::PersistenceManager
• points : BALL::VIEW::GridVisualisation
• points_ : BALL::TriangulatedSurface
• POLAR : BALL::SLICKEnergy::Option , BALL::SLICKEnergy::Default , BALL::SLICKScore::Option , BALL::SLICKScore::Default
• POLAR_AVG : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_CHARGE_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• polar_color_ : BALL::VIEW::ResidueTypeColorProcessor
• POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_GB : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_METHOD : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_RADIUS_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• polymer_class : BALL::NMRStarFile::MonomericPolymer
• pool_ : BALL::SmartsMatcher
• port_ : BALL::Client , BALL::TCPServer , BALL::VIEW::ServerPreferences , BALL::VIEW::ServerWidget::BALLViewServer , BALL::VIEW::ServerWidget
• pos_ : BALL::SmartsMatcher::RecStruct_
• pos_C : BALL::HBondProcessor::ResidueData
• pos_H : BALL::HBondProcessor::ResidueData
• pos_N : BALL::HBondProcessor::ResidueData
• pos_O : BALL::HBondProcessor::ResidueData
• posbridges_ : BALL::SecondaryStructureProcessor
• position : BALL::MOLFile::AtomStruct , BALL::MOL2File::AtomStruct , BALL::BindingPocketProcessor::Sphere_
• position_ : BALL::VIEW::LightSource , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::Atom , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::Composite::CompositeIteratorTraits , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::HashSet< Key >::IteratorTraits , BALL::INIFile::IteratorTraits_ , BALL::ResourceEntry::IteratorTraits_ , BALL::Atom::BondIteratorTraits , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::Peak< PositionType >
• position_data_size : BALL::TRRFile::TRRHeader
• POSITION_VALUE_NA : BALL::NMRStarFile
• possible_buried_polar_interactions_ : BALL::BuriedPolar
• possible_hydrogen_bonds_ : BALL::HydrogenBond
• possible_interactions_ : BALL::AromaticRingStacking , BALL::CHPI
• possible_lipophilic_interactions_ : BALL::Lipophilic
• possible_metal_interactions_ : BALL::ChemScoreMetal
• potential_energy_ : BALL::SnapShot
• potential_grid_ : BALL::VIEW::FieldLineCreator
• pov_nr_ : BALL::VIEW::Scene
• pre_translation_a_ : BALL::GeometricFit
• pre_translation_b_ : BALL::GeometricFit
• precision_ : BALL::TRRFile
• predicate : BALL::ExpressionParser::SyntaxTree
• predicate_ : BALL::CompositeIteratorTraits , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::ExpressionTree
• PREDICTION_METHOD : BALL::HBondProcessor::Option , BALL::HBondProcessor::Default
• predQualFetcher_ : BALL::QSAR::RegressionValidation
• preferences_ : BALL::VIEW::DisplayProperties , BALL::VIEW::PyWidget
• preferences_action_ : BALL::VIEW::MainControl
• preferences_dialog_ : BALL::VIEW::MainControl
• preferences_file_ : BALL::VIEW::MainControl
• prefix : BALL::LogStreamBuf::StreamStruct
• prefix_ : BALL::RuleEvaluator , BALL::VIEW::DemoTutorialDialog , BALL::VIEW::DownloadPDBFile
• pres_size : BALL::TRRFile::TRRHeader
• PRESSURE : BALL::PierottiCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option
• prev_shift_val_ : BALL::ShiftedLVMMMinimizer
• preview_ : BALL::VIEW::Scene
• previous_ : BALL::Composite
• primitive_manager_ : BALL::VIEW::MainControl
• print_expected : BALL::QSAR::PredictionConfiguration
• PRINT_TIMING : BALL::FDPB::Option , BALL::FDPB::Default
• probA : BALL::QSAR::LibsvmModel::svm_model
• probabilities_ : BALL::QSAR::NBModel
• probB : BALL::QSAR::LibsvmModel::svm_model
• probe_intersections_ : BALL::SESSingularityCleaner
• PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• probe_positions_ : BALL::RSComputer
• PROBE_RADIUS : BALL::NonpolarSolvation::Option , BALL::PCMCavFreeEnergyProcessor::Default , BALL::FDPB::Default , BALL::ReissCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Default , BALL::NumericalSAS::Option , BALL::NumericalSAS::Default , BALL::ReissCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::FDPB::Option , BALL::PCMCavFreeEnergyProcessor::Option , BALL::UhligCavFreeEnergyProcessor::Option , BALL::NonpolarSolvation::Default
• probe_radius_ : BALL::SurfaceProcessor , BALL::ReducedSurface , BALL::VIEW::AddSurfaceModel , BALL::NonpolarSolvation
• PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• probe_weight : BALL::BindingPocketProcessor::Sphere_
• processing_message_queue_ : BALL::VIEW::ConnectionObject
• processor_ : BALL::NonpolarSolvation , BALL::VIEW::AtomOverview
• prod_ : BALL::DSN6File
• progress_ : BALL::VIEW::PubChemDialog
• progress_bar_ : BALL::VIEW::DownloadPDBFile , BALL::VIEW::DownloadElectronDensity
• progress_dialog_ : BALL::VIEW::DockingController
• project_ : BALL::VIEW::ShowHelpMessage , BALL::VIEW::HelpViewer
• project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
• projection_mode_ : BALL::VIEW::Camera
• prop_ : BALL::DNAMutator
• properties_ : BALL::Composite , BALL::SmartsParser::SPAtom
• properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
• PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
• PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
• PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
• PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
• PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
• PROPERTY__RING_CURRENT_SHIFT : BALL::JohnsonBoveyShiftProcessor , BALL::HaighMallionShiftProcessor
• PROPERTY__SHIFT : BALL::ShiftModule
• property_files_ : BALL::EmpiricalHSShiftProcessor
• property_pairs_ : BALL::EmpiricalHSShiftProcessor
• protein_ : BALL::VIEW::PeptideDialog
• protein_clash_rad_ : BALL::BindingPocketProcessor
• protein_grid_ : BALL::BindingPocketProcessor
• proteinname_ : BALL::Peptides::PeptideBuilder
• proton_list_ : BALL::JohnsonBoveyShiftProcessor , BALL::AnisotropyShiftProcessor
• PROTON_MASS : BALL::Constant
• proxy_model_ : BALL::VIEW::ShortcutTableView
• PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default , BALL::Peptides::NameConverter::Option
• pseudo_conventions_ : BALL::Peptides::NameConverter
• pseudo_conversion_table_ : BALL::Peptides::NameConverter
• psi_ : BALL::Peptides::AminoAcidDescriptor , BALL::GeometricFit::RotationAngles_ , BALL::ResidueRotamerSet
• PSI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• PSI_MIN : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• pte_ : BALL::VIEW::EditFunctions
• ptr_ : BALL::TContourSurface< T >::Cube
• pug_base_url_ : BALL::PubChemDownloader
• pw_ : BALL::VIEW::PyWidget::MyLineEdit , BALL::VIEW::PyWidget::MyTextEdit
• PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• pw_grid_ : BALL::BindingPocketProcessor
• PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• PW_SQUARE_WELL : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• python_format : BALL::VIEW::PythonHighlighter
• python_keywords : BALL::VIEW::PythonHighlighter
• python_line_ : BALL::VIEW::TestFramework
• python_patterns : BALL::VIEW::PythonHighlighter
• python_settings_ : BALL::VIEW::PyWidget