BALL::DCDFile Member List

This is the complete list of members for BALL::DCDFile, including all inherited members.
adapt_float_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
adapt_size_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
append(const SnapShot &snapshot) BALL::DCDFile [virtual]
charmm_extra_block_A_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
charmm_extra_block_B_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
clear() BALL::DCDFile [virtual]
close() BALL::File
copy(String source_name, String destination_name, Size buffer_size=4096) BALL::File [static]
copyTo(const String &destination_name, Size buffer_size=4096) BALL::File
CORD_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
createTemporaryFilename(String &temporary) BALL::File [static]
current_snapshot_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
DCDFile() BALL::DCDFile
DCDFile(const DCDFile &file) BALL::DCDFile
DCDFile(const String &name, File::OpenMode open_mode=std::ios::in) BALL::DCDFile
disableTransformation(Transformation transformation) (defined in BALL::File) BALL::File [static]
disableVelocityStorage() (defined in BALL::DCDFile) BALL::DCDFile
enableTransformation(Transformation transformation) (defined in BALL::File) BALL::File [static]
enableVelocityStorage() (defined in BALL::DCDFile) BALL::DCDFile
File() BALL::File
File(const String &name, OpenMode open_mode=std::ios::in) BALL::File
File(const File &file) BALL::File
flushToDisk(const std::vector< SnapShot > &buffer) BALL::DCDFile [virtual]
getFileStream() BALL::File
getName() const BALL::File
getNumberOfAtoms() const BALL::TrajectoryFile
getNumberOfSnapShots() const BALL::TrajectoryFile
getOpenMode() const BALL::File
getOriginalName() const (defined in BALL::File) BALL::File
getSize() BALL::File
getSize(String name) BALL::File [static]
getTransformationManager() BALL::File
getTransformationManager() const BALL::File
getType(String name, bool trace_link) BALL::File [static]
getType(bool trace_link) const BALL::File
has_velocities_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
hasVelocities() const (defined in BALL::DCDFile) BALL::DCDFile
init() BALL::DCDFile
is_open_ (defined in BALL::File) BALL::File [protected]
is_temporary_ (defined in BALL::File) BALL::File [protected]
isAccessible(String name) BALL::File [static]
isAccessible() const BALL::File
isCanonized() const BALL::File
isClosed() const BALL::File
isExecutable(String name) BALL::File [static]
isExecutable() const BALL::File
isOpen() const BALL::File
isReadable(String name) BALL::File [static]
isReadable() const BALL::File
isSwappingBytes() const (defined in BALL::DCDFile) BALL::DCDFile
isTransformationEnabled(Transformation transformation) (defined in BALL::File) BALL::File [static]
isValid() const BALL::File
isWritable(String name) BALL::File [static]
isWritable() const BALL::File
MODE_APP BALL::File [static]
MODE_ATE BALL::File [static]
MODE_BINARY BALL::File [static]
MODE_IN BALL::File [static]
MODE_OUT BALL::File [static]
MODE_TRUNC BALL::File [static]
move(const String &source_name, const String &destination_name) BALL::File [static]
moveTo(const String &destination_name) BALL::File
name_ (defined in BALL::File) BALL::File [protected]
number_of_atoms_ (defined in BALL::TrajectoryFile) BALL::TrajectoryFile [protected]
number_of_comments_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
number_of_snapshots_ (defined in BALL::TrajectoryFile) BALL::TrajectoryFile [protected]
open(const String &name, File::OpenMode open_mode=std::ios::in) BALL::DCDFile [virtual]
open_mode_ (defined in BALL::File) BALL::File [protected]
OpenMode typedef BALL::File
operator!=(const File &file) const BALL::File
operator=(const DCDFile &file) BALL::DCDFile
BALL::TrajectoryFile::operator=(const TrajectoryFile &file) BALL::TrajectoryFile
BALL::File::operator=(const File &file) BALL::File
operator==(const DCDFile &file) const BALL::DCDFile
BALL::TrajectoryFile::operator==(const TrajectoryFile &file) const BALL::TrajectoryFile
BALL::File::operator==(const File &file) const BALL::File
original_name_ (defined in BALL::File) BALL::File [protected]
read(SnapShot &snapshot) BALL::DCDFile [virtual]
readFloat_() (defined in BALL::DCDFile) BALL::DCDFile [protected]
readHeader() BALL::DCDFile [virtual]
readSize_() (defined in BALL::DCDFile) BALL::DCDFile [protected]
readSize_(Size expected_size, const String &what) (defined in BALL::DCDFile) BALL::DCDFile [protected]
readVector_(vector< Vector3 > &v) (defined in BALL::DCDFile) BALL::DCDFile [protected]
registerTransformation(const String &pattern, const String &exec) (defined in BALL::File) BALL::File [static]
remove(String name) BALL::File [static]
remove() BALL::File
rename(String old_path, String new_path) BALL::File [static]
renameTo(const String &new_path) BALL::File
reopen() BALL::File
reopen(File::OpenMode open_mode) BALL::File
seekAndWriteHeader() (defined in BALL::DCDFile) BALL::DCDFile [virtual]
setName(const String &name) BALL::File
step_number_of_starting_time_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
steps_between_saves_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
swap_bytes_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
time_step_length_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
TrajectoryFile() BALL::TrajectoryFile
TrajectoryFile(const TrajectoryFile &file) BALL::TrajectoryFile
TrajectoryFile(const String &filename, File::OpenMode open_mode=std::ios::in) BALL::TrajectoryFile
Transformation enum name BALL::File
TRANSFORMATION__EXEC enum value (defined in BALL::File) BALL::File
TRANSFORMATION__FILTER enum value (defined in BALL::File) BALL::File
TRANSFORMATION__URL enum value (defined in BALL::File) BALL::File
TRANSFORMATION_EXEC_PREFIX BALL::File [static]
TRANSFORMATION_FILE_PREFIX BALL::File [static]
TRANSFORMATION_FTP_PREFIX BALL::File [static]
TRANSFORMATION_HTTP_PREFIX BALL::File [static]
transformation_manager_ (defined in BALL::File) BALL::File [protected, static]
transformation_methods_ (defined in BALL::File) BALL::File [protected, static]
truncate(String path, Size size=0) BALL::File [static]
truncate(Size size=0) BALL::File
Type enum name BALL::File
TYPE__BLOCK_SPECIAL_FILE enum value (defined in BALL::File) BALL::File
TYPE__CHAR_SPECIAL_FILE enum value (defined in BALL::File) BALL::File
TYPE__DIRECTORY enum value (defined in BALL::File) BALL::File
TYPE__FIFO_SPECIAL_FILE enum value (defined in BALL::File) BALL::File
TYPE__REGULAR_FILE enum value (defined in BALL::File) BALL::File
TYPE__SOCKET enum value (defined in BALL::File) BALL::File
TYPE__SYMBOLIC_LINK enum value (defined in BALL::File) BALL::File
TYPE__UNKNOWN enum value (defined in BALL::File) BALL::File
unregisterTransformation(const String &pattern) (defined in BALL::File) BALL::File [static]
verbosity_ (defined in BALL::DCDFile) BALL::DCDFile [protected]
writeFloat_(const float &data) (defined in BALL::DCDFile) BALL::DCDFile [protected]
writeHeader() BALL::DCDFile [virtual]
writeSize_(const Size &data) (defined in BALL::DCDFile) BALL::DCDFile [protected]
writeVector_(const vector< Vector3 > &v) (defined in BALL::DCDFile) BALL::DCDFile [protected]
~DCDFile() BALL::DCDFile [virtual]
~File() BALL::File [virtual]
~TrajectoryFile() BALL::TrajectoryFile [virtual]
Generated on Thu Aug 6 18:30:29 2009 for BALL by doxygen 1.5.8