PRT - Protein section (Table based) More...

#include <OpenMS/FORMAT/MzTab.h>

Collaboration diagram for MzTabProteinSectionRow:

Classes
struct	RowCompare
	Comparison operator for sorting rows. More...

Public Member Functions
	MzTabProteinSectionRow ()

Public Attributes
MzTabString	accession
	The protein’s accession.

MzTabString	description
	Human readable description (i.e. the name)

MzTabInteger	taxid
	NEWT taxonomy for the species.

MzTabString	species
	Human readable name of the species.

MzTabString	database
	Name of the protein database.

MzTabString	database_version
	String Version of the protein database.

MzTabParameterList	search_engine
	Search engine(s) identifying the protein.

std::map< Size, MzTabDouble >	best_search_engine_score
	best_search_engine_score[1-n]

std::map< Size, std::map< Size, MzTabDouble > >	search_engine_score_ms_run
	search_engine_score[index1]_ms_run[index2]

MzTabInteger	reliability

std::map< Size, MzTabInteger >	num_psms_ms_run

std::map< Size, MzTabInteger >	num_peptides_distinct_ms_run

std::map< Size, MzTabInteger >	num_peptides_unique_ms_run

MzTabStringList	ambiguity_members
	Alternative protein identifications.

MzTabModificationList	modifications
	Modifications identified in the protein.

MzTabString	uri
	Location of the protein’s source entry.

MzTabStringList	go_terms
	List of GO terms for the protein.

MzTabDouble	coverage
	(0-1) Amount of protein sequence identified.

std::map< Size, MzTabDouble >	protein_abundance_assay

std::map< Size, MzTabDouble >	protein_abundance_study_variable

std::map< Size, MzTabDouble >	protein_abundance_stdev_study_variable

std::map< Size, MzTabDouble >	protein_abundance_std_error_study_variable

std::vector< MzTabOptionalColumnEntry >	opt_
	Optional Columns must start with “opt_”

Detailed Description

PRT - Protein section (Table based)

Constructor & Destructor Documentation

◆ MzTabProteinSectionRow()

MzTabProteinSectionRow ( )

Member Data Documentation

◆ accession

MzTabString accession

The protein’s accession.

Referenced by MzTabProteinSectionRow::RowCompare::operator()().

◆ ambiguity_members

MzTabStringList ambiguity_members

Alternative protein identifications.

◆ best_search_engine_score

std::map<Size, MzTabDouble> best_search_engine_score

best_search_engine_score[1-n]

◆ coverage

MzTabDouble coverage

(0-1) Amount of protein sequence identified.

◆ database

MzTabString database

Name of the protein database.

◆ database_version

MzTabString database_version

String Version of the protein database.

◆ description

MzTabString description

Human readable description (i.e. the name)

◆ go_terms

MzTabStringList go_terms

List of GO terms for the protein.

◆ modifications

MzTabModificationList modifications

Modifications identified in the protein.

◆ num_peptides_distinct_ms_run

std::map<Size, MzTabInteger> num_peptides_distinct_ms_run

◆ num_peptides_unique_ms_run

std::map<Size, MzTabInteger> num_peptides_unique_ms_run

◆ num_psms_ms_run

std::map<Size, MzTabInteger> num_psms_ms_run

◆ opt_

std::vector<MzTabOptionalColumnEntry> opt_

Optional Columns must start with “opt_”

◆ protein_abundance_assay

std::map<Size, MzTabDouble> protein_abundance_assay

◆ protein_abundance_std_error_study_variable

std::map<Size, MzTabDouble> protein_abundance_std_error_study_variable

◆ protein_abundance_stdev_study_variable

std::map<Size, MzTabDouble> protein_abundance_stdev_study_variable

◆ protein_abundance_study_variable

std::map<Size, MzTabDouble> protein_abundance_study_variable

◆ reliability

MzTabInteger reliability

◆ search_engine

MzTabParameterList search_engine

Search engine(s) identifying the protein.

◆ search_engine_score_ms_run

std::map<Size, std::map<Size, MzTabDouble> > search_engine_score_ms_run

search_engine_score[index1]_ms_run[index2]

◆ species

MzTabString species

Human readable name of the species.

◆ taxid

MzTabInteger taxid

NEWT taxonomy for the species.

◆ uri

MzTabString uri

Location of the protein’s source entry.

Classes

Public Member Functions

Public Attributes