Here is a list of all class members with links to the classes they belong to:

- b -

• b : GammaDistributionFitter::GammaDistributionFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , GumbelMaxLikelihoodFitter::GumbelDistributionFitResult
• b_ : CubicSpline2d
• B_ : EGHModel
• b_ : QuadraticRegression , SpectrumAccessQuadMZTransforming , TOFCalibration
• b_intensity_ : NucleicAcidSpectrumGenerator , TheoreticalSpectrumGenerator , TheoreticalSpectrumGeneratorXLMS
• back() : ConstRefVector< ContainerT > , ExposedVector< VectorElement > , Weights , Mobilogram
• background_subtraction_ : MRMTransitionGroupPicker
• backtrack_tech : LPWrapper::SolverParam
• backward_ : HiddenMarkovModel
• base : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
• Base : Annotations1DContainer , DBoundingBox< D > , DRange< D > , FeatureFinderAlgorithmIsotopeWavelet
• base : IntensityIteratorWrapper< IteratorT >
• Base : AsymmetricStatistics< RealT > , Matrix< Value > , MSExperiment , ScoreToTgtDecLabelPairs , SimplePairFinder , StablePairFinder
• Base64() : Base64
• base64 : MzMLHandlerHelper::BinaryData
• base_container_ptr_ : ConstRefVector< ContainerT >
• base_dir_ : FIAMSScheduler
• base_match_probability_ : AScore
• base_name_ : PeptideIdentification
• base_peak_fraction : MQExporterHelper::MQCommonOutputs
• base_policy_type : BK_PrecPolicy< T >
• BaseException() : BaseException
• baseExperiment : IsobaricChannelExtractor::PuritySate_
• BaseFeature() : BaseFeature
• BaseGroupFinder() : BaseGroupFinder
• BaseLabeler() : BaseLabeler
• baseline : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
• BASELINE : MassAnalyzer
• baseline_delta_2_height : PeakIntegrator::PeakShapeMetrics
• BASELINE_REDUCTION : DataProcessing
• baseline_type_ : PeakIntegrator
• BASELINE_TYPE_BASETOBASE : PeakIntegrator
• BASELINE_TYPE_VERTICALDIVISION : PeakIntegrator
• BASELINE_TYPE_VERTICALDIVISION_MAX : PeakIntegrator
• BASELINE_TYPE_VERTICALDIVISION_MIN : PeakIntegrator
• baseloss_formula_ : Ribonucleotide
• BaseModel() : BaseModel< D >
• basename() : File
• basename_ : CachedSwathFileConsumer , MzMLSwathFileConsumer
• BASEPEAK_CHROMATOGRAM : ChromatogramSettings
• BaseSuperimposer() : BaseSuperimposer
• BaseVisualizerGUI() : BaseVisualizerGUI
• basic() : AAIndex
• basic_residues_ : IonizationSimulation
• basic_statistics_ : SpectrumAnnotator
• basicity_ : SvmTheoreticalSpectrumGenerator
• BasicProteinInferenceAlgorithm() : BasicProteinInferenceAlgorithm
• BasicStatistics : EGHModel , EmgModel , GaussModel , BasicStatistics< RealT >
• BATCH : IonSource
• batch_size_ : FeatureFinderIdentificationAlgorithm , XTandemInfile
• batchMRMFeatures() : MRMBatchFeatureSelector
• batchMRMFeaturesQMIP() : MRMBatchFeatureSelector
• batchMRMFeaturesScore() : MRMBatchFeatureSelector
• BayesianProteinInferenceAlgorithm() : BayesianProteinInferenceAlgorithm
• bb_charge_ : ProtonDistributionModel
• bb_charge_full_ : ProtonDistributionModel
• bb_charge_ion_c_term_ : ProtonDistributionModel
• bb_charge_ion_n_term_ : ProtonDistributionModel
• BC_ZERO_ENDPOINTS : BSpline2d
• BC_ZERO_FIRST : BSpline2d
• BC_ZERO_SECOND : BSpline2d
• before() : SysInfo::MemUsage
• begin() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence , CalibrationData , ConsensusFeature , ConstRefVector< ContainerT > , DeconvolvedSpectrum , DPosition< D, TCoordinateType > , EmpiricalFormula , ExposedVector< VectorElement > , HashGrid< Cluster > , IsotopeDistribution , IsotopeWaveletTransform< PeakType >::TransSpectrum , MassTrace , Histogram< ValueType, BinSizeType > , Mobilogram , MSExperiment , NASequence , Param , PeakGroup , RibonucleotideDB , ScanWindow , TextFile , XCorrArrayType
• begin_ : GUIProgressLoggerImpl , ScanWindowVisualizer , StringView
• begin_right_padding_ : ContinuousWaveletTransform , ContinuousWaveletTransformNumIntegration
• beginEnzyme() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
• BernNorm() : BernNorm
• best_id_confidence_measure : MzTabMSmallMoleculeSectionRow
• best_id_confidence_value : MzTabMSmallMoleculeSectionRow
• best_localization : RNPxlReportRow
• best_localization_score : RNPxlReportRow
• best_search_engine_score : MzTabNucleicAcidSectionRow , MzTabOligonucleotideSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
• bestk_() : MapAlignmentAlgorithmSpectrumAlignment
• beta : OPXLDataStructs::ProteinProteinCrossLink
• beta_ : MessagePasserFactory< Label >
• beta_index : OPXLDataStructs::XLPrecursor
• beta_seq : OPXLDataStructs::XLPrecursor
• better_ : MapAlignmentAlgorithmIdentification
• bibliographic_reference_ : MSQuantifications
• BiGaussFitter1D() : BiGaussFitter1D
• BiGaussModel() : BiGaussModel
• BilinearInterpolation() : BilinearInterpolation< Key, Value >
• bin_count_ : SignalToNoiseEstimatorMeanIterative< Container > , SignalToNoiseEstimatorMedian< Container >
• bin_data_ : MzMLHandler
• bin_masses_ : PrecursorIonSelectionPreprocessing
• bin_mul_factors_ : FLASHDeconvAlgorithm
• bin_offset_ : TargetedSpectraExtractor::BinnedSpectrumComparator
• bin_offsets_ : FLASHDeconvAlgorithm
• bin_size_ : BinnedSpectrum , Histogram< ValueType, BinSizeType > , TargetedSpectraExtractor::BinnedSpectrumComparator
• bin_sizes_ : FIAMSDataProcessor
• bin_spread_ : BinnedSpectrum
• bin_tolerances_ : QTClusterFinder
• BINARY : LPWrapper
• binary : QcMLFile::Attachment
• binary_data_array_ : MzMLValidator
• binary_data_type_ : MzMLValidator
• BinaryData : MzMLHandler , MzMLHandlerHelper::BinaryData , MzMLSpectrumDecoder
• binaryDataArrayPtrs : Chromatogram , Spectrum , OSChromatogram , OSSpectrum
• binarySearchNodes_() : ProteinResolver
• BinaryTreeNode() : BinaryTreeNode
• BindingSite_() : EnzymaticDigestionLogModel::BindingSite_
• BinnedSharedPeakCount() : BinnedSharedPeakCount
• BinnedSpectralContrastAngle() : BinnedSpectralContrastAngle
• BinnedSpectrum() : BinnedSpectrum
• BinnedSpectrumCompareFunctor() : BinnedSpectrumCompareFunctor
• BinnedSumAgreeingIntensities() : BinnedSumAgreeingIntensities
• bins_ : BinnedSpectrum , Histogram< ValueType, BinSizeType >
• binSize() : Histogram< ValueType, BinSizeType >
• binSpectrum_() : BinnedSpectrum
• binValue() : Histogram< ValueType, BinSizeType >
• biological_rng_ : SimRandomNumberGenerator
• BIon : NASequence , Residue
• BIonMinusH20 : NASequence , Residue
• BIonMinusNH3 : NASequence , Residue
• bioreplicate_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
• BIRD : Precursor
• blacklist_ : FilterableList , MultiplexFiltering
• blacklistPeak_() : MultiplexFiltering
• blank_features : PeptideAndProteinQuant::Statistics
• blind_ : InspectInfile
• blocks_list_ : TOPPASBase
• Blue : ColorBrewer::Distinct
• BOOST_STRONG_TYPEDEF() : IDBoostGraph
• BORDER_LENGTH : SVMWrapper
• border_length_ : SVMWrapper
• borderPoint_() : TOPPASEdge
• BOTH : Compomer
• BOTTOM : AxisPainter
• bottom_axis_ : HistogramWidget
• bound_() : LogStream
• boundaries_ : MultiplexFilteringProfile
• boundary_ : MascotInfile , MascotRemoteQuery
• boundary_selection_method_ : MRMTransitionGroupPicker
• BoundaryCondition : BSpline2d
• bounding_box_ : Annotation1DItem , GridBasedCluster
• boundingBox() : Annotation1DItem
• boundingRect() : TOPPASEdge , TOPPASInputFileListVertex , TOPPASMergerVertex , TOPPASOutputFileListVertex , TOPPASSplitterVertex , TOPPASToolVertex , TOPPASVertex
• Box : FeatureFinderAlgorithmIsotopeWavelet , IsotopeWaveletTransform< PeakType >
• branching_tech : LPWrapper::SolverParam
• breakpoint_set_ : TOPPASToolVertex
• breakString() : ConsoleUtils
• breakString_() : ConsoleUtils
• breakStringList() : ConsoleUtils
• bringInMetaStats_() : LayerStatistics
• broadcastNewCWD_() : FLASHDeconvTabWidget , SwathTabWidget
• Brown : ColorBrewer::Distinct
• browseDefaultPath_() : TOPPViewPrefDialog
• browsePluginsPath_() : TOPPViewPrefDialog
• brush_color_ : TOPPASVertex
• bs_library_ : TargetedSpectraExtractor::BinnedSpectrumComparator
• bseries_score : OpenSwath_Scores
• BSpline2d() : BSpline2d
• bspline_ : PeakWidthEstimator
• BtnLRAllClicked_() : ListFilterDialog
• BtnLRClicked_() : ListFilterDialog
• BtnRLAllClicked_() : ListFilterDialog
• BtnRLClicked_() : ListFilterDialog
• bucketFilter_() : MapAlignmentAlgorithmSpectrumAlignment
• bucketsize_ : MapAlignmentAlgorithmSpectrumAlignment
• buffer_ : HistogramWidget , PlotCanvas , TextFile
• BufferOverflow() : BufferOverflow
• buildAmbiguityGroup() : MetaboTargetedAssay
• buildAnalysisCollection_() : MzIdentMLDOMHandler
• buildAnalysisDataCollection_() : MzIdentMLDOMHandler
• buildAnalysisProtocolCollection_() : MzIdentMLDOMHandler
• buildAnalysisSoftwareList_() : MzIdentMLDOMHandler
• buildCandidates() : OPXLHelper
• buildCvList_() : MzIdentMLDOMHandler
• buildElement_() : ElementDB
• buildEnclosedCV_() : MzIdentMLDOMHandler
• buildFragmentAnnotations() : OPXLHelper
• buildGraph() : PeptideProteinResolution
• buildGraph_() : IDBoostGraph
• buildGraphWithRunInfo_() : IDBoostGraph
• buildingISDGroups_() : ProteinResolver
• buildingMSDGroups_() : ProteinResolver
• buildInputDataCollection_() : MzIdentMLDOMHandler
• buildNativeIDResolver() : OSWData
• buildPeptideIDs() : OPXLHelper
• buildResidues_() : ResidueDB
• buildRoundPackages() : TOPPASVertex
• buildSequenceCollection_() : MzIdentMLDOMHandler
• buildTree() : MapAlignmentAlgorithmTreeGuided
• buildUIDFromPepID() : PeptideIdentification
• buildUIDsFromAllPepIDs() : PeptideIdentification
• buildUrl_() : MascotRemoteQuery
• buildVectorIndex_() : IsobaricNormalizer
• BulkData() : QTCluster::BulkData
• buttongroup_ : MetaInfoVisualizer
• ByteOrder : Base64
• BYTEORDER_BIGENDIAN : Base64
• BYTEORDER_LITTLEENDIAN : Base64
• BZ2 : FileTypes
• bzerror_ : Bzip2Ifstream
• bzip2_ : Bzip2InputStream
• bzip2file_ : Bzip2Ifstream
• Bzip2Ifstream() : Bzip2Ifstream
• Bzip2InputStream() : Bzip2InputStream