Here is a list of all class members with links to the classes they belong to:

- d -

• d : RANSACParam
• D : ProductModel< 2 >
• d_ : CubicSpline2d
• d_intensity_ : NucleicAcidSpectrumGenerator
• DALTONS : XTandemInfile
• DALYDETECTOR : IonDetector
• DarkGrey : ColorBrewer::Distinct
• dashed_ : Annotation1DVerticalLineItem
• data : BinaryDataArray , MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData , OSBinaryDataArray , XCorrArrayType
• data_ : CalibrationData , DataValue , ExposedVector< VectorElement > , FASTAContainer< TFI_Vector > , KDTreeFeatureNode , BilinearInterpolation< Key, Value > , LinearInterpolation< Key, Value > , Mobilogram , ParamValue , QTCluster , SimpleSVM , TransformationDescription , TransformationXMLFile
• data_bg_ : FASTAContainer< TFI_File >
• data_fg_ : FASTAContainer< TFI_File >
• data_given_ : TransformationModelLinear
• data_id : Observation
• data_length_ : IsotopeWaveletTransform< PeakType >
• DATA_PROCESSING : DataProcessing
• data_processing_ : ChromatogramSettings , ConsensusMap , FeatureMap , MzDataHandler , MzXMLHandler , MetaInfoDescription , SpectrumSettings
• data_processings_ : MSQuantifications
• data_range_ : Area< N_DIM >
• data_to_decode_ : MzDataHandler
• data_to_encode_ : MzDataHandler
• data_type : MzMLHandlerHelper::BinaryData
• database : DBSearchParam , MzTabMDatabaseMetaData , MzTabMMetaData , MzTabNucleicAcidSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
• database_ : SequestInfile
• DATABASE_EMPTY : PeptideIndexing
• database_identifier : MzTabMSmallMoleculeEvidenceSectionRow , MzTabMSmallMoleculeSectionRow
• database_location_ : AccurateMassSearchEngine
• database_name_ : AccurateMassSearchEngine
• database_ref : MzIdentMLDOMHandler::DBSequence
• database_version : DBSearchParam , MzTabNucleicAcidSectionRow , MzTabPeptideSectionRow , MzTabProteinSectionRow , MzTabPSMSectionRow , MzTabSmallMoleculeSectionRow
• database_version_ : AccurateMassSearchEngine
• DataFilter() : DataFilters::DataFilter
• DataFilterDialog() : DataFilterDialog
• DataFilters() : DataFilters
• DataMatrix() : DataMatrix
• DataPoint : TransformationDescription , TransformationModel::DataPoint
• DataPoints : TransformationDescription , TransformationModel
• DataProcessing() : DataProcessing
• DataProcessingVisualizer() : DataProcessingVisualizer
• DataSelectionTabs() : DataSelectionTabs
• dataToWidget() : Plot1DCanvas
• dataToWidget_() : Plot1DCanvas , Plot2DCanvas
• dataToWidgetDistance() : Plot1DCanvas
• dataToZoomArray_() : Plot3DOpenGLCanvas
• DataType : DataValue , LayerDataDefs
• DataValue() : DataValue
• Datavector : CachedMzMLHandler
• Date() : Date
• date : MzIdentMLDOMHandler::DatabaseInput
• date_ : MascotXMLHandler , PepXMLFile , ProteinIdentification
• date_time : ProcessingStep
• date_time_string_ : MascotXMLHandler
• DateTime() : DateTime
• datetime_ : ExperimentalSettings , ExperimentalSettingsVisualizer
• DatumSingleton : CachedMzMLHandler
• db : ProteinIdentification::SearchParameters
• db_ : InspectInfile , OMSFileLoad , OMSFileStore , MascotInfile , MzTab::CMMzTabStream , MzTab::IDMzTabStream , ProteinIdentificationVisualizer , SqliteConnector
• db_map_ : MzIdentMLDOMHandler
• db_mapping_file_ : AccurateMassSearchEngine
• db_mass_ : AccurateMassSearchResult
• db_pos_length_ : InspectOutfile
• db_search_params_ : IdentificationData
• db_search_steps_ : IdentificationData
• db_sq_map_ : MzIdentMLDOMHandler
• db_struct_file_ : AccurateMassSearchEngine
• db_version : ProteinIdentification::SearchParameters
• db_version_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream , ProteinIdentificationVisualizer
• dbflags : CsiFingerIdMzTabWriter::CsiAdapterHit
• DBoundingBox() : DBoundingBox< D >
• dbPreprocessing() : PrecursorIonSelectionPreprocessing
• DBSearchParam : IdentificationData , DBSearchParam
• DBSearchParams : IdentificationData
• DBSearchSteps : IdentificationData
• DBSuitability() : DBSuitability
• DBSuitability_friend : DBSuitability , DBSuitability_friend
• deactivate1DSpectrum() : TVIdentificationViewController , TVSpectraViewController
• deactivateBehavior() : TVControllerBase , TVIdentificationViewController
• deactivatePrecalculationMode() : MultiGradient
• debug() : BSpline2d
• debug_ : FeatureFinderAlgorithmPicked , MapAlignmentAlgorithmSpectrumAlignment
• debug_im_file_ : SwathMapMassCorrection
• debug_level_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm , SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects , TOPPBase
• debug_lvl_ : BayesianProteinInferenceAlgorithm
• debug_mz_file_ : SwathMapMassCorrection
• debug_streams_ : LogConfigHandler
• debugFileCreator_() : MapAlignmentAlgorithmSpectrumAlignment
• debugmatrix_ : MapAlignmentAlgorithmSpectrumAlignment
• debugOut_() : TOPPASVertex
• debugscoreDistributionCalculation_() : MapAlignmentAlgorithmSpectrumAlignment
• debugscorematrix_ : MapAlignmentAlgorithmSpectrumAlignment
• debugtraceback_ : MapAlignmentAlgorithmSpectrumAlignment
• decode() : Base64
• decodeBase64Arrays() : MzMLHandlerHelper
• decodeBinaryDataChrom_() : MzMLSpectrumDecoder
• decodeBinaryDataMSChrom_() : MzMLSpectrumDecoder
• decodeBinaryDataMSSpectrum_() : MzMLSpectrumDecoder
• decodeBinaryDataSpectrum_() : MzMLSpectrumDecoder
• decodeCompressed_() : Base64
• decoded_char : MzMLHandlerHelper::BinaryData
• decoded_double_list_ : MzDataHandler
• decoded_list_ : MzDataHandler
• decodeIntegers() : Base64
• decodeIntegersCompressed_() : Base64
• decodeIntegersUncompressed_() : Base64
• decodeNP() : MSNumpressCoder
• decodeNPInternal_() : MSNumpressCoder
• decodeNPRaw() : MSNumpressCoder
• decoder_ : Base64
• decodeSingleString() : Base64
• decodeStrings() : Base64
• decodeUncompressed_() : Base64
• decomp_ : MassDecomposition
• decomp_cache_ : CompNovoIdentificationBase
• decomp_weights_precision_ : CompNovoIdentificationBase
• decomposer_ : RealMassDecomposer , MassDecompositionAlgorithm
• decomposition_type : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
• decomposition_value_type : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType >
• decompositions_type : IntegerMassDecomposer< ValueType, DecompositionValueType > , MassDecomposer< ValueType, DecompositionValueType > , RealMassDecomposer
• decon_ms1_mz_tol_ : SwathQC
• deconvolutePeak_() : PeakPickerCWT
• deconvolution_ : PeakPickerCWT
• deconvolved_spectrum_ : FLASHDeconvAlgorithm
• DeconvolvedSpectrum() : DeconvolvedSpectrum
• DECOY : ReactionMonitoringTransition
• decoy : SiriusFragmentAnnotation::SiriusTargetDecoySpectra , TransitionTSVFile::TSVTransition , LightTransition
• decoy_ : OSWPeptidePrecursor
• decoy_case_sensitive : DecoyHelper::DecoyStatistics
• decoy_compound_ref : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
• decoy_count : DecoyHelper::DecoyStatistics
• decoy_counts : TargetedExperiment::SummaryStatistics
• decoy_file_number : MetaboTargetedAssay::TargetDecoyGroup
• decoy_index : MetaboTargetedAssay::TargetDecoyGroup
• decoy_index_ : ConfidenceScoring
• decoy_mz : MetaboTargetedAssay::TargetDecoyGroup
• decoy_pattern_ : DBSuitability
• decoy_prefix_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PepXMLFile
• decoy_product_masses : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
• decoy_rt : MetaboTargetedAssay::TargetDecoyGroup
• decoy_string_ : XQuestResultXMLHandler , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , PeptideIndexing , XFDRAlgorithm
• decoy_type_ : ReactionMonitoringTransition
• DecoyGenerator() : DecoyGenerator
• decoys_ : SimpleSearchEngineAlgorithm
• DecoyStringToAffixCount : DecoyHelper
• DecoyTransitionType : ReactionMonitoringTransition
• DEF_COSINE_SIMILARITY : GNPSMGFFile
• DEF_MERGE_BIN_SIZE : GNPSMGFFile
• DEF_MSMAP_CACHE : GNPSMGFFile
• DEF_PEPT_CUTOFF : GNPSMGFFile
• default_array_length : MzMLHandler::ChromatogramData , MzMLHandler::SpectrumData
• default_array_length_ : MzMLHandler
• default_baseloss_ : Ribonucleotide
• DEFAULT_BIN_OFFSET_HIRES : BinnedSpectrum
• DEFAULT_BIN_OFFSET_LOWRES : BinnedSpectrum
• DEFAULT_BIN_WIDTH_HIRES : BinnedSpectrum
• DEFAULT_BIN_WIDTH_LOWRES : BinnedSpectrum
• default_charge_ : ParentPeakMower
• default_dir_ : ToolsDialog , TOPPASToolConfigDialog
• default_ms_level_ : DTAFile
• default_nterm_mods_ : XTandemXMLFile
• default_parameters_file_ : XTandemInfile
• default_processing_ : MzMLHandler
• default_scan_regexp : SpectrumLookup
• default_value : ParameterInformation
• defaultArrayLength : Chromatogram , Spectrum , OSChromatogram , OSSpectrum
• DefaultParamHandler() : DefaultParamHandler
• defaults_ : DefaultParamHandler
• defaultsToParam_() : DefaultParamHandler
• defineDefaults() : DiaPrescore
• DEGREE : SVMWrapper
• deisotope_mode_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• deisotopeAndSingleCharge() : Deisotoper
• deisotopeAndSingleChargeMSSpectrum_() : NucleicAcidSearchEngine
• deisotopeMS2Spectra_() : TargetedSpectraExtractor
• deisotopeWithAveragineModel() : Deisotoper
• DEISOTOPING : DataProcessing
• deisotoping_annotate_charge_ : TargetedSpectraExtractor
• deisotoping_fragment_tolerance_ : TargetedSpectraExtractor
• deisotoping_fragment_unit_ : TargetedSpectraExtractor
• deisotoping_keep_only_deisotoped_ : TargetedSpectraExtractor
• deisotoping_max_charge_ : TargetedSpectraExtractor
• deisotoping_max_isopeaks_ : TargetedSpectraExtractor
• deisotoping_min_charge_ : TargetedSpectraExtractor
• deisotoping_min_isopeaks_ : TargetedSpectraExtractor
• deisotoping_use_deisotoper_ : TargetedSpectraExtractor
• delay_ : AcqusHandler
• delay_in_seconds_ : FileWatcher
• DELAYED_EXTRACTION : Instrument
• delete_buffer_ : LogStream
• deleteAllItems_() : Annotations1DContainer
• deleteData_() : GradientVisualizer
• deletePredecessorState() : HMMState
• deleteRow() : LPWrapper
• deleteSetNull_() : MzMLSwathFileConsumer
• deleteSuccessorState() : HMMState
• delim_ : MSstatsFile , TriqlerFile
• delta() : SysInfo::MemUsage
• delta_cn_weights_ : SequestOutfile
• delta_D() : SpectraSTSimilarityScore
• delta_mass : MultiplexDeltaMasses::DeltaMass , MultiplexDeltaMassesGenerator::Label
• delta_mass_weights_ : SequestOutfile
• delta_masses_ : MultiplexDeltaMasses
• delta_masses_list_ : MultiplexDeltaMassesGenerator
• DeltaMass() : MultiplexDeltaMasses::DeltaMass
• denominator_ref_ : ConsensusFeature::Ratio
• DeNovoAlgorithm() : DeNovoAlgorithm
• DeNovoIdentification() : DeNovoIdentification
• DeNovoIonScoring() : DeNovoIonScoring
• DeNovoPostScoring() : DeNovoPostScoring
• DepletedIDPool() : DepletedIDPool
• depth : ACNode::DepthHits
• depth_and_hits : ACNode
• DepthHits() : ACNode::DepthHits
• derivative() : BSpline2d , CubicSpline2d , LinearInterpolation< Key, Value >
• derivatives() : CubicSpline2d
• derivatization_agent : MzTabMMetaData
• DerivatizationAgent : IsotopeLabelingMDVs
• derivatized_form : MzTabMSmallMoleculeEvidenceSectionRow
• des : SiriusMSFile::CompoundInfo
• desc_ : TOPPASBase
• description : ControlledVocabulary::CVTerm , FASTAFile::FASTAEntry , ParentSequence , IsobaricQuantitationMethod::IsobaricChannelInformation , ItraqConstants::ChannelInfo , MultiplexDeltaMassesGenerator::Label , MzTabMetaData , MzTabMMetaData , MzTabMStudyVariableMetaData , MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSampleMetaData , MzTabSmallMoleculeSectionRow , MzTabStudyVariableMetaData , Param::ParamEntry , Param::ParamIterator::TraceInfo , Param::ParamNode , ParameterInformation , OSBinaryDataArray
• description_ : ConsensusFeature::Ratio , FASTAFile , PepXMLFile::AminoAcidModification , ToolInfo
• description_text_ : TOPPASScene
• descriptions_ : ParamXMLHandler
• descriptionUpdated_() : TOPPASBase
• descriptors : SvmTheoreticalSpectrumGenerator::DescriptorSet
• DescriptorSet : SvmTheoreticalSpectrumGeneratorTrainer
• DescriptorSetType : SvmTheoreticalSpectrumGenerator::DescriptorSet
• deselectAll() : Annotations1DContainer
• deselectItemAt() : Annotations1DContainer
• destroy() : IsotopeWavelet , IsotopeWaveletTransform< PeakType >::TransSpectrum
• destroyProblem() : LibSVMEncoder
• DetectabilitySimulation() : DetectabilitySimulation
• detectElutionPeaks_() : ElutionPeakDetection
• detecting_transition : TransitionTSVFile::TSVTransition , LightTransition
• detectingTransitions() : MRMAssay
• detector : MzTabInstrumentMetaData
• detectOriginAnnotationFormat_() : IDRipper
• detectPeaks() : ElutionPeakDetection
• determineChargeState_() : PeakPickerCWT
• determineHighestScoringPermutations_() : AScore
• determineIMFormat() : IMTypes
• determinePeptideIntensitiesCentroided_() : FeatureFinderMultiplexAlgorithm
• determinePeptideIntensitiesProfile_() : FeatureFinderMultiplexAlgorithm
• determineSiriusExecutable() : SiriusAdapterAlgorithm
• DEX : PrecursorIonSelection
• df() : EGHFitter1D::EGHFitterFunctor , EGHTraceFitter::EGHTraceFunctor , EmgFitter1D::EgmFitterFunctor , GaussTraceFitter::GaussTraceFunctor , LevMarqFitter1D::GenericFunctor , OptimizePick::OptPeakFunctor , TraceFitter::GenericFunctor , TwoDOptimization::TwoDOptFunctor
• DFS_BLACK : TOPPASVertex
• dfs_ccsplit_visitor() : IDBoostGraph::dfs_ccsplit_visitor
• DFS_COLOR : TOPPASVertex
• dfs_color_ : TOPPASVertex
• DFS_GRAY : TOPPASVertex
• DFS_WHITE : TOPPASVertex
• dfsVisit_() : TOPPASScene
• DI : IonSource
• dia_by_ion_score() : DIAScoring
• dia_byseries_intensity_min_ : DIAScoring
• dia_byseries_ppm_diff_ : DIAScoring
• dia_centroided_ : DIAScoring , SONARScoring
• dia_extract_window_ : DiaPrescore , DIAScoring , SONARScoring
• dia_extraction_ppm_ : DIAScoring , SONARScoring
• dia_isotope_scores() : DIAScoring
• dia_massdiff_score() : DIAScoring
• dia_ms1_isotope_scores() : DIAScoring
• dia_ms1_isotope_scores_averagine() : DIAScoring
• dia_ms1_massdiff_score() : DIAScoring
• dia_nr_charges_ : DIAScoring
• dia_nr_isotopes_ : DIAScoring
• dia_treewidget_ : DIATreeTab
• dia_widget_ : DataSelectionTabs
• diagonal() : DIntervalBase< D >
• diaIsotopeScoresSub_() : DIAScoring
• DIAOSW_IDX : DataSelectionTabs
• DiaPrescore() : DiaPrescore
• DIAScoring() : DIAScoring
• diascoring_ : MRMFeatureFinderScoring
• diatab_controller_ : DataSelectionTabs
• DIATreeTab() : DIATreeTab
• diff_average_mass_ : ResidueModification
• diff_exponent_ : SimplePairFinder
• diff_formula_ : UnimodXMLHandler , ResidueModification
• diff_intercept_ : SimplePairFinder
• diff_mono_mass_ : ResidueModification
• diff_score : IDDecoyProbability::Transformation_
• diff_str_() : SysInfo::MemUsage
• difference_type : _Iterator< _Val, _Ref, _Ptr > , KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , AASequence::ConstIterator , AASequence::Iterator , ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT > , ConstRefVector< ContainerT > , ExposedVector< VectorElement > , HashGrid< Cluster >::ConstIterator , HashGrid< Cluster >::Iterator , AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT > , IntensityIteratorWrapper< IteratorT > , MatchedIterator< CONT_T, TRAIT, CONST_T > , Matrix< Value > , NASequence::ConstIterator , NASequence::Iterator
• DifferenceType : Matrix< Value >
• diffEstimatedEmpirical() : FalseDiscoveryRate
• digest() : DigestSimulation , EnzymaticDigestionLogModel , ProteaseDigestion , RNaseDigestion
• digestAfterTokenize_() : EnzymaticDigestion
• digestDatabase() : OPXLHelper
• digested_db_ : Contaminants
• Digestion() : Digestion
• digestion_ : IDFilter::DigestionFilter , IDFilter::PeptideDigestionFilter
• digestion_enzyme : DBSearchParam , ProteinIdentification::SearchParameters
• digestion_time_ : Digestion
• DigestionEnzyme() : DigestionEnzyme
• digestionenzyme_ : DigestionVisualizer
• DigestionEnzymeDB() : DigestionEnzymeDB< DigestionEnzymeType, InstanceType >
• DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > : ProteaseDB
• DigestionEnzymeDB< DigestionEnzymeRNA, RNaseDB > : RNaseDB
• DigestionEnzymeProtein() : DigestionEnzymeProtein
• DigestionFilter() : IDFilter::DigestionFilter
• digestionPH_ : DigestionVisualizer
• digestiontemperature_ : DigestionVisualizer
• digestiontime_ : DigestionVisualizer
• DigestionVisualizer() : DigestionVisualizer
• DigestSimulation() : DigestSimulation
• digestUnmodified() : EnzymaticDigestion
• dilution_factor : AbsoluteQuantitationStandards::featureConcentration , AbsoluteQuantitationStandards::runConcentration
• DIM : RangeIntensity , RangeMobility , RangeMZ , RangeRT
• dim_ : FeatureXMLHandler
• DimBase() : DimBase
• DIMENSION : ChromatogramPeak , DBoundingBox< D > , DPosition< D, TCoordinateType > , DRange< D > , DIntervalBase< D > , AveragePosition< D > , MobilityPeak1D , MobilityPeak2D , Peak1D , Peak2D
• dimension_name_full_ : MobilityPeak2D , Peak2D
• dimension_name_short_ : MobilityPeak2D , Peak2D
• dimension_unit_full_ : MobilityPeak2D , Peak2D
• dimension_unit_short_ : MobilityPeak2D , Peak2D
• DimensionDescription : MobilityPeak2D , Peak2D
• dimensionsChanged_() : PlotCanvas
• dimensionsize() : DistanceMatrix< Value >
• dimensionsize_ : DistanceMatrix< Value >
• DimIM() : DimIM
• DimINT() : DimINT
• DimMapper() : DimMapper< N_DIM >
• DimMZ() : DimMZ
• DimRT() : DimRT
• dims_ : DimMapper< N_DIM >
• DIntervalBase : DIntervalBase< D >
• DIon : NASequence
• DIRECT : IonSource
• directoryChanged() : OutputDirectory
• dirNameValid() : OutputDirectory
• disable : Colorizer::ColorWithUndo_
• disable_() : ToolsDialog
• disable_parsing_ : FeatureXMLHandler
• disableCutoff() : TOPPViewOpenDialog
• disableDimension() : TOPPViewOpenDialog
• disabledValue() : IDFilter::PeptideDigestionFilter
• disableLocation() : TOPPViewOpenDialog
• disableTransition() : HiddenMarkovModel
• disableTransition_() : HiddenMarkovModel
• disableTransitions() : HiddenMarkovModel
• disconnect() : _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
• discover_vertex() : IDBoostGraph::dfs_ccsplit_visitor
• disease : MzTabSampleMetaData
• Disjoint : DRange< D >
• DISSI : IonSource
• dist_ : HistogramWidget , LocalLinearMap , OptimizePeakDeconvolution , UniqueIdGenerator
• distance : BinaryTreeNode , QTCluster::Neighbor
• distance_() : FeatureDistance , MinimumDistance
• distance_it_for_cluster_idx_ : GridBasedClustering< Metric >
• distance_type : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , squared_difference< _Tp, _Dist > , squared_difference_counted< _Tp, _Dist >
• DistanceMatrix() : DistanceMatrix< Value >
• DistanceParams_() : FeatureDistance::DistanceParams_
• distances_ : GridBasedClustering< Metric >
• distIsOutlier_() : QTClusterFinder
• distribute_() : LogStreamBuf
• distribution_ : IsotopeDistribution
• distributions_ : ProductModel< 2 >
• divideByGCD() : Weights
• DivisionByZero() : DivisionByZero
• dlg_ : GUIProgressLoggerImpl
• DM_CONNECTEDLINES : Plot1DCanvas
• dm_elements_2d_ : TOPPViewBase
• dm_hull_2d_ : TOPPViewBase
• dm_hulls_2d_ : TOPPViewBase
• dm_ident_2d_ : TOPPViewBase
• dm_label_2d_ : TOPPViewBase
• DM_PEAKS : Plot1DCanvas
• dm_precursors_2d_ : TOPPViewBase
• dm_unassigned_2d_ : TOPPViewBase
• do_p_trim : IsoSpecTotalProbWrapper
• doCacheFile_() : SwathFile
• doCleanup_() : MSDataWritingConsumer , NoopMSDataWritingConsumer
• document_id_ : IdXMLFile
• DocumentIdentifier() : DocumentIdentifier
• DocumentIdentifierVisualizer() : DocumentIdentifierVisualizer
• DocumentIDTagger() : DocumentIDTagger
• docurl_ : ToolInfo
• doDataNormalization_() : OpenSwathCalibrationWorkflow
• doesParamChangeInvalidate_() : TOPPASToolVertex
• doi : Citation
• domParseChromatogram() : MzMLSpectrumDecoder
• domParseIndexedEnd_() : IndexedMzMLDecoder
• domParseSpectrum() : MzMLSpectrumDecoder
• domParseString_() : MzMLSpectrumDecoder
• done() : MascotRemoteQuery , NetworkGetRequest
• doPopulateSpectraWithData_() : MzXMLHandler
• doRelease_() : shared_xerces_ptr< T > , unique_xerces_ptr< T >
• dot_bias() : SpectraSTSimilarityScore
• dotprod_score_dia : OpenSwath_Scores
• DOUBLE : ParameterInformation , String
• DOUBLE_BOUNDED : LPWrapper
• DOUBLE_LIST : DataValue , ParamValue
• DOUBLE_VALUE : DataValue , ParamValue
• DOUBLELIST : ParameterInformation
• DoubleTolerancePredicate_() : ListUtils::DoubleTolerancePredicate_
• doubleToString() : ParamValue
• DoubleType : CachedMzMLHandler
• DoubleVector : LowessSmoothing
• DOWN : MassAnalyzer
• download() : File
• downloadProgress() : MascotRemoteQuery
• downloadTOPPASfromHomepage_() : TOPPASBase
• DOWNSHIFT : PrecursorIonSelection
• doWrite_ : OpenSwathOSWWriter , OpenSwathTSVWriter
• DPair : RansacModel< ModelT >
• DPosition() : DPosition< D, TCoordinateType >
• dps_ : MSDataWritingConsumer
• drag_start_pos_ : TOPPASTreeView
• dragEnterEvent() : EnhancedTabBar , EnhancedWorkspace , InputFile , InputFileList , PlotWidget , TOPPASWidget
• dragMoveEvent() : EnhancedWorkspace , InputFile , InputFileList , PlotWidget , TOPPASWidget
• DRange() : DRange< D >
• DRangeIntersection : DRange< D >
• draw() : Annotation1DCaret< DataPoint > , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem< DataPoint > , Annotation1DTextItem , Annotation1DVerticalLineItem
• draw_group_1d_ : TOPPViewBase
• draw_interesting_MZs_ : Plot1DCanvas
• draw_modes_ : Plot1DCanvas
• drawAlignment_() : Plot1DCanvas
• drawAnnotations_() : Painter1DBase
• drawAxesLegend_() : Plot3DOpenGLCanvas
• drawBoundingBox_() : Annotation1DItem
• drawCaret() : PainterBase
• drawCoordinates_() : Plot1DCanvas , Plot2DCanvas
• drawCross() : PainterBase
• drawDashedLine() : PainterBase
• drawDeltas_() : Plot1DCanvas , Plot2DCanvas
• drawDiamond() : PainterBase
• drawHighlightedPeak_() : Plot1DCanvas
• drawIcon() : PainterBase
• drawLineWithArrows() : PainterBase
• DrawModes : Plot1DCanvas
• drawMZAtInterestingPeaks_() : Painter1DPeak
• drawText_() : PlotCanvas
• drift_time : TransitionTSVFile::TSVTransition , LightCompound
• drift_time_ : MSSpectrum , Precursor , PeptideCompound
• drift_time_unit_ : Mobilogram , MSSpectrum , Precursor
• drift_window_low_ : Precursor
• drift_window_up_ : Precursor
• driftScoring() : IonMobilityScoring
• driftScoringMS1() : IonMobilityScoring
• driftScoringMS1Contrast() : IonMobilityScoring
• DRIFTTIME_NOT_SET : IMTypes
• dropEvent() : EnhancedTabBar , EnhancedWorkspace , InputFile , InputFileList , PlotWidget , TOPPASWidget
• dropOnTab() : EnhancedTabBar
• dropOnWidget() : EnhancedTabBar
• dropReceived() : EnhancedWorkspace , PlotWidget
• dry_run_ : TOPPASScene
• dryRunFinished() : TOPPASScene
• dt_ : DateTime
• DT_CHROMATOGRAM : LayerDataDefs
• DT_CONSENSUS : LayerDataDefs
• DT_FEATURE : LayerDataDefs
• DT_FLOAT : MzMLHandlerHelper::BinaryData
• DT_IDENT : LayerDataDefs
• DT_INT : MzMLHandlerHelper::BinaryData
• dt_model_file_ : DetectabilitySimulation
• DT_NONE : MzMLHandlerHelper::BinaryData
• DT_PEAK : LayerDataDefs
• DT_STRING : MzMLHandlerHelper::BinaryData
• DT_UNKNOWN : LayerDataDefs
• DTA : FileTypes
• DTA2D : FileTypes
• DTA2DFile() : DTA2DFile
• DTAFile() : DTAFile
• dump() : HiddenMarkovModel
• dunnIndices() : ClusterAnalyzer
• DVec : RansacModel< ModelT >
• DVecIt : RansacModel< ModelT >
• dw_ : AcqusHandler
• DYNODE : IonDetector
• dynprog_() : SpectrumCheapDPCorr