Here is a list of all class members with links to the classes they belong to:

- t -

• T : Hit , Index
• t : RANSACParam
• t_star_ : LinearRegression
• tab_bar_ : TOPPASBase , TOPPViewBase
• TAB_INDEX : DataSelectionTabs
• tab_ptrs_ : DataSelectionTabs
• tab_width_ : FuzzyStringComparator
• tabAt_() : EnhancedTabBar
• tabBarDoubleClicked() : DataSelectionTabs
• table_steps_ : IsotopeWavelet
• table_widget_ : SpectraIDViewTab
• tableExists() : SqliteConnector
• tableRows : QcMLFile::Attachment
• tables_splitter_ : SpectraIDViewTab
• TableView() : TableView
• tag() : DocumentIDTagger
• tag_ : CVMappingFile , MascotXMLHandler , MzIdentMLHandler , MzQuantMLHandler , PTMXMLHandler , ToolDescriptionHandler , TraMLHandler , UnimodXMLHandler , OMSSAXMLFile , QcMLFile , XTandemXMLFile
• tag_count_ : InspectInfile
• Tagger() : Tagger
• Tagging() : Tagging
• taggingmass_shift_ : TaggingVisualizer
• taggingvariant_ : TaggingVisualizer
• TaggingVisualizer() : TaggingVisualizer
• tags : Param::ParamEntry , ParameterInformation
• tags_open_ : MascotXMLHandler
• tailing_factor : PeakIntegrator::PeakShapeMetrics
• Tan : ColorBrewer::Distinct
• target : FileMapping , LogStreamBuf::StreamStruct , PeakGroup
• TARGET : ReactionMonitoringTransition
• target : SiriusFragmentAnnotation::SiriusTargetDecoySpectra
• target_ : ListUtils::DoubleTolerancePredicate_
• target_compound_ref : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
• target_decoy : ConsensusIDAlgorithm::HitInfo
• target_decoy_spectra : MetaboTargetedAssay::CompoundTargetDecoyPair
• target_dspec_for_dummy_calcualtion_ : FLASHDeconvAlgorithm
• target_dummy_type_ : FLASHDeconvAlgorithm , PeakGroup
• target_file_number : MetaboTargetedAssay::TargetDecoyGroup
• target_in_param_ : TOPPASEdge
• target_index : MetaboTargetedAssay::TargetDecoyGroup
• target_input_param_indices_ : TOPPASIOMappingDialog
• target_intensity : PrecursorPurity::PurityScores
• target_mass_bins_ : FLASHDeconvAlgorithm
• target_mono_masses_ : FLASHDeconvAlgorithm
• target_mz : MetaboTargetedAssay::TargetDecoyGroup
• target_peak_count : PrecursorPurity::PurityScores
• target_prob : IsoSpecTotalProbWrapper
• target_product_masses : MetaboTargetedTargetDecoy::MetaboTargetDecoyMassMapping
• target_rt : MetaboTargetedAssay::TargetDecoyGroup
• target_rts_ : FeatureFinderAlgorithmMetaboIdent
• TargetDecoyMapT : MRMAssay
• TargetDummyType : PeakGroup
• TargetedExperiment() : TargetedExperiment
• TargetedExpType : MRMFeatureFinderScoring
• targetedMatching() : TargetedSpectraExtractor
• TargetedSpectraExtractor() : TargetedSpectraExtractor
• targets_ : TargetedExperiment
• tau_ : EGHFitter1D , EGHModel , EGHTraceFitter
• taxid : MzTabNucleicAcidSectionRow , MzTabProteinSectionRow , MzTabSmallMoleculeSectionRow
• taxon_ : XTandemInfile
• taxonomy : DBSearchParam , ProteinIdentification::SearchParameters
• taxonomy_ : MascotInfile , ProteinIdentificationVisualizer
• taxonomy_file_ : XTandemInfile
• td_ : AcqusHandler , ToolDescriptionHandler
• td_vec_ : ToolDescriptionHandler
• TDC : IonDetector
• tde_ : ToolDescriptionHandler
• TDF : InstrumentSettings
• technical_rng_ : SimRandomNumberGenerator
• techrepmixture_ : MSstatsFile::MSstatsTMTLine_
• temp_ : BaseVisualizer< ObjectType >
• temp_dir_ : File::TempDir
• TempDir() : File::TempDir
• temperature_ : Digestion , HPLC
• temporary_annotations_ : TVIdentificationViewController
• temporary_files_ : File
• TemporaryFiles_() : File::TemporaryFiles_
• TENPERCENTVALLEY : MassAnalyzer
• term_name_ : CVMappingTerm
• term_spec_ : PepXMLFile::AminoAcidModification , ResidueModification , Ribonucleotide
• term_spec_alpha : OPXLDataStructs::ProteinProteinCrossLink
• term_spec_beta : OPXLDataStructs::ProteinProteinCrossLink
• term_specs_ : UnimodXMLHandler
• terminal_series_match_ratio_ : SpectrumAnnotator
• terminate() : GlobalExceptionHandler
• terminateCurrentPipeline() : TOPPASScene
• terminus_ : PepXMLFile::AminoAcidModification
• terms_ : ControlledVocabulary
• TermSpecificity : ResidueModification
• TermSpecificityNuc : Ribonucleotide
• test_mode_ : TOPPBase
• TestTOPPView : TOPPViewBase
• TestTSGDialog : TheoreticalSpectrumGenerationDialog
• TEXT : ParameterInformation
• text_ : Annotation1DItem
• text_box_content_ : Plot1DCanvas
• text_fail : ToolExternalDetails
• text_finish : ToolExternalDetails
• text_offset_ : Annotation1DVerticalLineItem
• text_startup : ToolExternalDetails
• textEditChanged_() : OutputDirectory
• TextFile() : TextFile
• textPos() : ACSpawn , ACTrieState
• textPosIt() : ACTrieState
• tgt_begin_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
• tgt_end_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
• tgtIdx() : MatchedIterator< CONT_T, TRAIT, CONST_T >
• tgts : IDBoostGraph::ProteinGroup
• th_ : BernNorm
• theoretical_int : FeatureFinderAlgorithmPickedHelperStructs::MassTrace
• theoretical_mass : Compound
• theoretical_mz : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
• theoretical_mz_ : AccurateMassSearchResult
• theoretical_neutral_mass : MzTabMSmallMoleculeSectionRow
• theoretical_pattern : FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern
• TheoreticalIsotopePattern : FeatureFinderAlgorithmPicked , IsotopeDistributionCache
• TheoreticalSpectrumGenerationDialog() : TheoreticalSpectrumGenerationDialog
• TheoreticalSpectrumGenerator() : TheoreticalSpectrumGenerator
• TheoreticalSpectrumGeneratorXLMS() : TheoreticalSpectrumGeneratorXLMS
• THERMOSPRAYINLET : IonSource
• ThisRangeType : RangeManager< RangeBases > , RangeManagerContainer< RangeBases >
• THREADED_RANDOM_NUMBER_POOL_SIZE_ : RawMSSignalSimulation
• threaded_random_numbers_ : RawMSSignalSimulation
• threaded_random_numbers_index_ : RawMSSignalSimulation
• threads_active_ : TOPPASScene
• threads_outer_loop_ : OpenSwathWorkflowBase
• three_letter_code_ : Residue
• THREE_PRIME : Ribonucleotide
• three_prime_ : NASequence
• three_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
• ThreePrime : NASequence
• thresh_p_ : MassExplainer
• threshold_ : ClusterHierarchical , MapAlignmentAlgorithmSpectrumAlignment , ThresholdMower
• threshold_cvs : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
• threshold_ups : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
• ThresholdMower() : ThresholdMower
• TI : IonSource
• TIC : MorpheusScore::Result , TIC
• tic_weight_ : TargetedSpectraExtractor
• TICFilter() : TICFilter
• tick_level_ : AxisWidget
• ticks_ : Annotation1DDistanceItem
• ticksToSeconds_() : StopWatch::TimeDiff_
• tileHorizontal() : EnhancedWorkspace
• tileVertical() : EnhancedWorkspace
• TIME_LAG_FOCUSING : Instrument
• time_limit : LPWrapper::SolverParam
• timedOut() : MascotRemoteQuery
• timeOut() : NetworkGetRequest
• timeout_ : MascotRemoteQuery
• timepoint_vali_ : GradientVisualizer
• timepoints_ : GradientVisualizer
• timers_ : FileWatcher
• timerTriggered_() : FileWatcher
• times_ : Gradient
• timestamp : LogStreamBuf::LogCacheStruct
• TimeType : StopWatch
• tissue : MzTabSampleMetaData
• title : Citation , MzTabMetaData , MzTabMMetaData
• tmp_boxes_ : IsotopeWaveletTransform< PeakType >
• tmp_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
• tmp_ms_file_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
• tmp_neighbors_ : QTCluster::BulkData
• tmp_out_dir_ : SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects
• tmp_path_ : FLASHDeconvWizardBase , SwathWizardBase , TOPPASBase , TOPPASScene , TOPPASToolVertex
• TMT_SIXPLEX : ItraqConstants
• TMTEighteenPlexQuantitationMethod() : TMTEighteenPlexQuantitationMethod
• TMTElevenPlexQuantitationMethod() : TMTElevenPlexQuantitationMethod
• TMTSixPlexQuantitationMethod() : TMTSixPlexQuantitationMethod
• TMTSixteenPlexQuantitationMethod() : TMTSixteenPlexQuantitationMethod
• TMTTenPlexQuantitationMethod() : TMTTenPlexQuantitationMethod
• to1DLayer() : LayerDataBase , LayerDataChrom , LayerDataConsensus , LayerDataFeature , LayerDataIdent , LayerDataIonMobility , LayerDataPeak
• to_ : MascotRemoteQuery , TOPPASEdge
• toAdductString() : Adduct
• toBool() : DataValue , ParamValue
• toBracketString() : AASequence
• toCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
• toChar() : DataValue , ParamValue
• toCSVString() : QcMLFile::Attachment
• today() : Date
• toDouble() : String , StringUtilsHelper
• toDoubleList() : DataValue
• toDoubleVector() : ParamValue
• toExpandedString() : MassDecomposition
• TOF : MassAnalyzer
• TOF_ : MassAnalyzerVisualizer
• TOF_total_path_length_ : MassAnalyzer
• TOFCalibration() : TOFCalibration
• toFeatureVector_() : Qscore
• toFileDialogFilter() : FileTypeList
• toFloat() : String , StringUtilsHelper
• toFullParameter() : SiriusAdapterAlgorithm::ParameterSection
• toggleAdvancedMode() : ParamEditor
• toggleAxisLegends() : TOPPViewBase
• toggleBreakpoint() : TOPPASToolVertex
• toggleGridLines() : TOPPViewBase
• toggleInterestingMZs() : TOPPViewBase
• toggleMirrorView() : Plot1DWidget
• toggleProjections() : Plot2DCanvas , Plot2DWidget , TOPPViewBase
• toInt() : String
• toInt32() : String , StringUtilsHelper
• toInt64() : String , StringUtilsHelper
• toIntList() : DataValue
• toIntVector() : ParamValue
• tokenize_() : EnzymaticDigestion
• tol_ : MatchedIterator< CONT_T, TRAIT, CONST_T >
• tol_ppm_ : InternalCalibration::CalibrantStats_
• tolerance_ : FLASHDeconvAlgorithm , IDScoreSwitcherAlgorithm , ListUtils::DoubleTolerancePredicate_
• tolerance_mz_ : TwoDOptimization
• tolerance_stdev_box_ : Fitter1D
• ToleranceUnit : QCBase
• toLower() : String , StringListUtils
• toMap() : EmpiricalFormula
• toNative_() : StringManager
• too_few_peptides : PeptideAndProteinQuant::Statistics
• tool_bar_ : TOPPASBase , TOPPViewBase
• tool_bar_1d_ : TOPPViewBase
• tool_bar_2d_cons_ : TOPPViewBase
• tool_bar_2d_feat_ : TOPPViewBase
• tool_bar_2d_ident_ : TOPPViewBase
• tool_bar_2d_peak_ : TOPPViewBase
• TOOL_CRASH : TOPPASToolVertex
• tool_desc_ : ToolsDialog
• tool_description_ : TOPPBase
• tool_map_ : ToolsDialog
• tool_name_ : TOPPASToolConfigDialog , TOPPBase
• tool_param_futures_ : TVToolDiscovery
• tool_params_ : ToolsDialog , TVToolDiscovery
• TOOL_READY : TOPPASToolVertex
• tool_ready_ : TOPPASToolVertex
• TOOL_RUNNING : TOPPASToolVertex
• TOOL_SCAN : TOPPViewBase
• tool_scanner_ : ToolsDialog , TOPPViewBase
• TOOL_SCHEDULED : TOPPASToolVertex
• TOOL_SUCCESS : TOPPASToolVertex
• tool_type_ : TOPPASToolConfigDialog
• toolCrashed() : TOPPASBase , TOPPASToolVertex
• toolCrashedSlot() : TOPPASToolVertex
• ToolDescription() : ToolDescription
• ToolDescriptionFile() : ToolDescriptionFile
• ToolDescriptionHandler() : ToolDescriptionHandler
• ToolDescriptionInternal() : ToolDescriptionInternal
• toolDroppedOnWidget() : TOPPASWidget
• toolFailed() : TOPPASBase , TOPPASToolVertex
• toolFailedSlot() : TOPPASToolVertex
• toolFinished() : TOPPASBase , TOPPASToolVertex
• toolFinishedSlot() : TOPPASToolVertex
• toolhandler_test_ : TOPPBase
• toolname_ : DocumentIDTagger
• toolName_() : TOPPBase
• toolnameWithWhitespacesForFancyWordWrapping_() : TOPPASToolVertex
• tools_combo_ : ToolsDialog
• tools_external_ : ToolHandler
• tools_external_loaded_ : ToolHandler
• tools_internal_ : ToolHandler
• tools_internal_loaded_ : ToolHandler
• tools_tree_view_ : TOPPASBase
• toolScheduledSlot() : TOPPASToolVertex
• ToolsDialog() : ToolsDialog
• toolStarted() : TOPPASBase , TOPPASToolVertex
• toolStartedSlot() : TOPPASToolVertex
• TOOLSTATUS : TOPPASToolVertex
• TOOLSTATUS_SIZE : TOPPASToolVertex
• TOP : AxisPainter
• TOP_MARGIN : Plot1DCanvas
• top_matches_to_report_ : TargetedSpectraExtractor
• toPeakAnnotation() : Annotation1DPeakItem< DataPoint >
• topFD_max_peak_count_ : FLASHDeconvSpectrumFile
• topFD_min_peak_count_ : FLASHDeconvSpectrumFile
• topNmatch_fragmenterrors_ : SpectrumAnnotator
• topo_nr_ : TOPPASVertex
• topo_sort_marked_ : TOPPASVertex
• topoSort() : TOPPASScene
• topp_ : TOPPViewBase
• topp_ini_file_ : TOPPBase
• topp_processes_queue_ : TOPPASScene
• TOPPAS : FileTypes
• TOPPASBase() : TOPPASBase
• TOPPASEdge() : TOPPASEdge
• toppasFileDownloaded_() : TOPPASBase
• TOPPASFilenames() : TOPPASVertex::TOPPASFilenames
• TOPPASInputFileDialog() : TOPPASInputFileDialog
• TOPPASInputFileListVertex() : TOPPASInputFileListVertex
• TOPPASInputFilesDialog() : TOPPASInputFilesDialog
• TOPPASIOMappingDialog() : TOPPASIOMappingDialog
• TOPPASMergerVertex() : TOPPASMergerVertex
• TOPPASOutputFileListVertex() : TOPPASOutputFileListVertex
• TOPPASOutputFilesDialog() : TOPPASOutputFilesDialog
• TOPPASreadyRead() : TOPPASBase
• TOPPASResource() : TOPPASResource
• TOPPASResources() : TOPPASResources
• TOPPASScene() : TOPPASScene
• TOPPASSplitterVertex() : TOPPASSplitterVertex
• TOPPASToolConfigDialog() : TOPPASToolConfigDialog
• TOPPASToolVertex() : TOPPASToolVertex
• TOPPASTreeView() : TOPPASTreeView
• TOPPASVertex() : TOPPASVertex
• TOPPASVertexNameDialog() : TOPPASVertexNameDialog
• TOPPASWidget() : TOPPASWidget
• TOPPBase : File , TOPPBase
• TOPPFLASHDeconv() : TOPPFLASHDeconv
• TOPPGNPSExport() : TOPPGNPSExport
• TOPPOpenSwathBase() : TOPPOpenSwathBase
• toppOutputReady() : TOPPASToolVertex
• TOPPProcess() : TOPPASScene::TOPPProcess
• TOPPViewBase() : TOPPViewBase
• TOPPViewMenu() : TOPPViewMenu
• TOPPViewOpenDialog() : TOPPViewOpenDialog
• TOPPViewPrefDialog() : TOPPViewPrefDialog
• toQString() : DataValue , String
• toShapeIcon() : PainterBase
• toSpectrum() : DeconvolvedSpectrum
• toString() : AASequence , Citation , DataFilters::DataFilter , DataValue , DateTime , EmpiricalFormula , IdentifiedMolecule , MassDecomposition , RANSACParam , MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_ , MultiGradient , MZTrafoModel , NASequence , ParamValue , Residue , ResidueModification , StopWatch , TOPPASEdge , TriqlerFile::TriqlerLine_
• toStringList() : DataValue , ListUtils
• toStringVector() : ParamValue
• total_abundances : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
• total_current : OPXLDataStructs::CrossLinkSpectrumMatch
• total_distinct_peptides : PeptideAndProteinQuant::ProteinData
• total_features : PeptideAndProteinQuant::Statistics
• total_gradient_time_ : RTSimulation
• total_intensity : PrecursorPurity::PurityScores
• TOTAL_ION_CURRENT_CHROMATOGRAM : ChromatogramSettings
• total_nr_peaks : TwoDOptimization::Data
• total_peptides : PeptideAndProteinQuant::Statistics
• total_psm_counts : PeptideAndProteinQuant::PeptideData , PeptideAndProteinQuant::ProteinData
• total_size_ : MSExperiment
• total_weight_reciprocal_ : FeatureDistance
• total_width : PeakIntegrator::PeakShapeMetrics
• total_xic : OpenSwath_Scores
• totalMatchedCurrent() : XQuestScores
• toUnimodLikeString() : PepXMLFile::AminoAcidModification
• toUniModString() : AASequence
• toUnmodifiedString() : AASequence
• toUpper() : String , StringListUtils
• toXMLString() : ControlledVocabulary::CVTerm , QcMLFile::Attachment , QcMLFile::QualityParameter
• tr_gr_id_ : MRMTransitionGroup< ChromatogramType, TransitionType >
• tr_table : ToolExternalDetails
• trace_ : Param::ParamIterator
• trace_peaks_ : MassTrace
• trace_termination_criterion_ : MassTraceDetection
• trace_termination_outliers_ : MassTraceDetection
• trace_tolerance_ : FeatureFinderAlgorithmPicked
• TraceFitter() : TraceFitter
• TraceInfo() : Param::ParamIterator::TraceInfo
• traces_ptr : TraceFitter::ModelData
• trackNoise() : FIAMSDataProcessor
• trafo_ : FeatureFinderAlgorithmMetaboIdent
• trafo_external_ : FeatureFinderIdentificationAlgorithm
• train() : HiddenMarkovModel , MZTrafoModel , SVMWrapper
• train_count_trans_all_ : HiddenMarkovModel
• train_emission_prob_ : HiddenMarkovModel
• trained_trans_ : HiddenMarkovModel
• training_data_ : SVMWrapper
• training_problem_ : SVMWrapper
• training_set_ : SVMWrapper
• training_steps_count_ : HiddenMarkovModel
• trainModel() : SvmTheoreticalSpectrumGeneratorTrainer
• trainSecondaryTypes_() : SvmTheoreticalSpectrumGeneratorTrainer
• TRAML : FileTypes
• TraMLFile() : TraMLFile
• TraMLHandler() : TraMLHandler
• TraMLProduct() : TraMLProduct
• TraMLValidator() : TraMLValidator
• trans_ : HiddenMarkovModel
• trans_intens_ : IsotopeWaveletTransform< PeakType >::TransSpectrum
• trans_x_ : Plot3DOpenGLCanvas
• trans_y_ : Plot3DOpenGLCanvas
• TransferLLOQAndULOQToCalculatedConcentrationBounds() : MRMFeatureFilter
• transferSubelements() : FeatureGroupingAlgorithm
• transform() : ContinuousWaveletTransformNumIntegration , MapAlignmentAlgorithmKD , MzMLFile , MzXMLFile , SpectraSTSimilarityScore , SqMassFile
• transform_() : IsotopeDistribution
• Transformation_() : IDDecoyProbability::Transformation_
• transformation_model_ : AbsoluteQuantitationMethod
• transformation_model_params_ : AbsoluteQuantitationMethod
• TransformationDescription() : TransformationDescription
• TransformationModel() : TransformationModel
• TransformationModelBSpline() : TransformationModelBSpline
• TransformationModelInterpolated() : TransformationModelInterpolated
• TransformationModelLinear() : TransformationModelLinear
• TransformationModelLowess() : TransformationModelLowess
• transformations_ : MapAlignmentAlgorithmKD
• TransformationStatistics() : TransformationDescription::TransformationStatistics
• TRANSFORMATIONXML : FileTypes
• TransformationXMLFile() : TransformationXMLFile
• transformFirstPass_() : MzMLFile , MzXMLFile
• transformPoint_() : Plot3DOpenGLCanvas
• transformRetentionTimes() : MapAlignmentTransformer
• transformScore_() : PosteriorErrorProbabilityModel
• transID_to_index_ : OSWData
• TRANSIENTRECORDER : IonDetector
• TRANSITION : OSWHierarchy
• Transition : TargetedExperiment , LightTargetedExperiment
• transition_count : TargetedExperiment::SummaryStatistics
• transition_flags_ : ReactionMonitoringTransition
• transition_ids_ : OSWPeakGroup
• transition_map_ : ConfidenceScoring , MRMTransitionGroup< ChromatogramType, TransitionType >
• transition_name : TransitionTSVFile::TSVTransition , LightTransition
• transition_quality_score : MetaboTargetedAssay
• transitionCount() : OSWData
• TransitionGroupMapType : MRMFeatureFinderScoring
• TransitionGroupOpenMS() : TransitionGroupOpenMS< SpectrumT, TransitionT >
• TransitionPQPFile() : TransitionPQPFile
• transitions : LightTargetedExperiment , Peptide
• transitions_ : MRMTransitionGroup< ChromatogramType, TransitionType > , OSWData , TargetedExperiment
• TransitionsType : MRMTransitionGroup< ChromatogramType, TransitionType >
• TransitionTSVFile() : TransitionTSVFile
• TransitionType : DIAScoring , IonMobilityScoring , MRMFeatureFinderScoring , OpenSwathScoring , OpenSwathWorkflow , MRMScoring
• TransitionVectorType : MRMAssay , MRMDecoy , TransitionTSVFile
• translate() : IdentificationData::RefTranslator
• translateBackward_() : Plot1DCanvas , Plot2DCanvas , PlotCanvas
• translateForward_() : Plot1DCanvas , Plot2DCanvas , PlotCanvas
• translateIsotopeMatrix() : ItraqConstants
• translateLeft_() : Plot1DCanvas , Plot2DCanvas , PlotCanvas
• translateRight_() : Plot1DCanvas , Plot2DCanvas , PlotCanvas
• translateVisibleArea_() : Plot2DCanvas
• TransSpectrum() : IsotopeWaveletTransform< PeakType >::TransSpectrum
• TRAP : Precursor
• trapezoidal_area() : FalseDiscoveryRate , ROCCurve
• trapezoidal_area_xEqy() : FalseDiscoveryRate
• traversed : ProteinResolver::PeptideEntry , ProteinResolver::ProteinEntry
• traversePeptide_() : ProteinResolver
• traverseProtein_() : ProteinResolver
• treatmentcomment_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
• treatments_ : Sample
• treatmenttype_ : DigestionVisualizer , ModificationVisualizer , TaggingVisualizer
• tree_ : ParamEditor
• tree_id_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• tree_pos : ACSpawn , ACTrieState
• tree_score : SiriusMzTabWriter::SiriusAdapterHit
• treeGuidedAlignment() : MapAlignmentAlgorithmTreeGuided
• treeSize() : KDTreeFeatureMaps
• TreeView() : TreeView
• treeview_ : MetaDataBrowser
• trgroup_ : TransitionGroupOpenMS< SpectrumT, TransitionT >
• tricube_() : LowessSmoothing
• trie_ : ACTrie
• trie_db_pos_length_ : InspectOutfile
• trie_delimiter_ : InspectOutfile
• trim() : String
• trim_right_cutoff_ : ExtendedIsotopeModel , IsotopeModel
• trimIntensities() : IsotopeDistribution
• trimLeft() : IsotopeDistribution
• trimmed_left : FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
• trimOpenMSfileURI() : MzIdentMLHandler
• trimRight() : IsotopeDistribution
• trimText_() : LogWindow
• TriqlerFile() : TriqlerFile
• TriqlerLine_() : TriqlerFile::TriqlerLine_
• tryGnuplot() : PosteriorErrorProbabilityModel
• tryptic_only_ : CompNovoIdentificationBase
• tsg_param_ : TOPPViewPrefDialog
• TSP : IonSource
• TSV : FileTypes
• TSVToTargetedExperiment_() : TransitionTSVFile
• tv : TOPPASScene::TOPPProcess
• tv_ : DataSelectionTabs , TVControllerBase
• TV_ALLFINISHED : TOPPASVertex
• TV_UNFINISHED : TOPPASVertex
• TV_UNFINISHED_INBRANCH : TOPPASVertex
• TVControllerBase() : TVControllerBase
• TVDIATreeTabController() : TVDIATreeTabController
• TVIdentificationViewController() : TVIdentificationViewController
• TVSpectraViewController() : TVSpectraViewController
• TVToolDiscovery() : TVToolDiscovery
• two_d_optimization_ : PeakPickerCWT
• TwoDOptFunctor() : TwoDOptimization::TwoDOptFunctor
• TwoDOptimization() : TwoDOptimization
• TXT : FileTypes
• Type : FileTypes , IonDetector
• type : LayerDataBase
• Type : ListEditor , LPWrapper
• type : ParameterInformation , PeakShape
• Type : PeakShape , PrecursorIonSelection
• type : ProteinResolver::ProteinEntry , ProteinResolver::ResolverResult , TOPPASToolVertex::IOInfo
• type_ : ChromatogramSettings , ListEditorDelegate , ListTable , IonDetector , IonDetectorVisualizer , ListEditor , MassAnalyzer , MassAnalyzerVisualizer , OSWTransition , PrecursorIonSelection , ProgressLogger , SampleTreatment , SpectrumSettings , SpectrumSettingsVisualizer , TOPPASToolVertex
• type_list_ : FileTypeList
• type_to_better_ : IDScoreSwitcherAlgorithm
• type_to_str_ : IDScoreSwitcherAlgorithm
• typeName_ : ListEditorDelegate
• TYPENULL : IonDetector
• types : ConsensusIDAlgorithm::HitInfo , FileTypeList::FilterElements_ , ToolDescriptionInternal
• typeToDescription() : FileTypes
• typeToMZML() : FileTypes
• typeToName() : FileTypes