Here is a list of all class members with links to the classes they belong to:

- l -

• l_ : RAIICleanup
• L_ID : LayerDataDefs
• L_ID_ALL : LayerDataDefs
• L_INDEX : LayerDataDefs
• L_META_LABEL : LayerDataDefs
• L_NONE : LayerDataDefs
• label : ConsensusMap::ColumnHeader , ControlledVocabulary , ExperimentalDesign::MSFileSectionEntry , ParentGroupSet , LayerDataBase
• Label() : MultiplexDeltaMassesGenerator::Label
• label : MzTabCVMetaData
• label_ : Adduct , ControlledVocabulary , MassTrace
• label_delta_mass_ : MultiplexDeltaMassesGenerator
• label_long_short_ : MultiplexDeltaMassesGenerator
• label_mass_shift_ : FeatureFinderMultiplexAlgorithm
• label_master_list_ : MultiplexDeltaMassesGenerator
• label_set : MultiplexDeltaMasses::DeltaMass
• label_short_long_ : MultiplexDeltaMassesGenerator
• label_type : TransitionTSVFile::TSVTransition
• labelAsDIAData() : LayerDataPeak
• labelAsIonMobilityData() : LayerDataPeak
• LabeledPairFinder() : LabeledPairFinder
• labeler_ : MSSim
• LABELFREE : MSQuantifications
• LabelFreeLabeler() : LabelFreeLabeler
• LabelMode : Plot1DCanvas
• labelPeptide_() : ITRAQLabeler
• labels : SVMData
• labels_ : MultiplexDeltaMassesGenerator
• labels_list_ : MultiplexDeltaMassesGenerator
• LabelSet : MultiplexDeltaMasses
• labelSetToString() : MultiplexDeltaMasses
• LabelType : LayerDataDefs
• lambda_chrom_ : MSDataTransformingConsumer
• lambda_exp_settings_ : MSDataTransformingConsumer
• lambda_spec_ : MSDataTransformingConsumer
• LambdaScore : MRMFeatureSelector
• largePeaksBeforeFirstIsotope_() : DIAScoring
• last_invoke_ : ProgressLogger
• last_known_python_exe_ : PythonSelector
• last_meta_ : IdXMLFile , ConsensusXMLHandler , FeatureXMLHandler
• last_mouse_pos_ : PlotCanvas
• last_name_ : ContactPerson
• last_package_ : SplineInterpolatedPeaks::Navigator
• last_peakmap_ : SpectraTreeTab
• last_start_ : StopWatch
• lastActiveSubwindow_ : TOPPViewBase
• lastconsensus() : SpectrumCheapDPCorr
• lastconsensus_ : SpectrumCheapDPCorr
• lastname_ : ContactPersonVisualizer
• layer_ : Painter1DChrom , Painter1DIonMobility , Painter1DPeak , Painter2DChrom , Painter2DConsensus , Painter2DFeature , Painter2DIdent , Painter2DIonMobility , Painter2DPeak , SpectraIDViewTab , SpectraTreeTab
• layer_dock_widget_ : TOPPViewBase
• layer_indices_1_ : SpectrumAlignmentDialog
• layer_indices_2_ : SpectrumAlignmentDialog
• layer_set_ : TOPPViewMenu::ActionRequirement_
• layer_type_ : ToolsDialog
• layerActivated() : PlotCanvas , TOPPViewBase
• LayerAnnotatorAMS() : LayerAnnotatorAMS
• LayerAnnotatorBase() : LayerAnnotatorBase
• LayerAnnotatorOSW() : LayerAnnotatorOSW
• LayerAnnotatorPeptideID() : LayerAnnotatorPeptideID
• LayerData1DChrom() : LayerData1DChrom
• LayerData1DIonMobility() : LayerData1DIonMobility
• LayerData1DPeak() : LayerData1DPeak
• LayerDataBase() : LayerDataBase
• layerDataChanged() : LayerListView
• LayerDataChrom() : LayerDataChrom
• LayerDataConsensus() : LayerDataConsensus
• LayerDataFeature() : LayerDataFeature
• LayerDataIdent() : LayerDataIdent
• LayerDataIonMobility() : LayerDataIonMobility
• LayerDataPeak() : LayerDataPeak
• layerDeactivated() : TOPPViewBase
• layerFilterVisibilityChange() : TOPPViewBase
• LayerListView() : LayerListView
• layerModficationChange() : PlotCanvas
• layers_ : LayerStack , PlotCanvas
• layers_view_ : TOPPViewBase
• layerStatistics() : TOPPViewBase
• LayerStatisticsConsensusMap() : LayerStatisticsConsensusMap
• LayerStatisticsDialog() : LayerStatisticsDialog
• LayerStatisticsFeatureMap() : LayerStatisticsFeatureMap
• LayerStatisticsIdent() : LayerStatisticsIdent
• LayerStatisticsPeakMap() : LayerStatisticsPeakMap
• LayerStoreData() : LayerStoreData
• LayerStoreDataConsensusMapAll() : LayerStoreDataConsensusMapAll
• LayerStoreDataConsensusMapVisible() : LayerStoreDataConsensusMapVisible
• LayerStoreDataFeatureMapAll() : LayerStoreDataFeatureMapAll
• LayerStoreDataFeatureMapVisible() : LayerStoreDataFeatureMapVisible
• LayerStoreDataIdentAll() : LayerStoreDataIdentAll
• LayerStoreDataIdentVisible() : LayerStoreDataIdentVisible
• LayerStoreDataPeakMapAll() : LayerStoreDataPeakMapAll
• LayerStoreDataPeakMapVisible() : LayerStoreDataPeakMapVisible
• layerZoomChanged() : PlotCanvas
• LCID : Precursor
• lcms_ : IntegerMassDecomposer< ValueType, DecompositionValueType >
• LD : IonSource
• LD_ALLDATA : XMLHandler
• LD_COUNTS_WITHOPTIONS : XMLHandler
• LD_RAWCOUNTS : XMLHandler
• leaveEvent() : PlotCanvas , TOPPASTreeView , TOPPASWidget
• LEFT : AxisPainter , Compomer
• left : PeakPickerCWT::PeakArea_
• left_boundary : PeakPickerMaxima::PeakCandidate , Range
• left_button_pressed_ : MultiGradientSelector
• left_child : BinaryTreeNode
• left_count_from_apex_ : FLASHDeconvHelperStructs::PrecalculatedAveragine
• left_endpoint_ : PeakShape
• left_iterator_set_ : PeakShape
• left_neighbor : ParentMatch
• left_splitter_ : HistogramWidget
• LEFT_TERMINUS : ParentMatch
• left_width : PeakShape
• left_width_ : PeakPickerMRM
• leftBorderOfBin() : Histogram< ValueType, BinSizeType >
• leftWidth : PeakCandidate
• legacyID_ : AccurateMassSearchEngine
• legend_ : AxisWidget
• legend_shown_ : Plot3DCanvas
• LESS_EQUAL : DataFilters
• letter : FuzzyStringComparator::StreamElement_
• Level : OSWHierarchy
• level_ : LogStreamBuf
• LevelName : OSWHierarchy
• levels_ : InMSLevelRange< SpectrumType >
• lever_area_height_ : MultiGradientSelector
• LevMarqFitter1D() : LevMarqFitter1D
• library_ : ConfidenceScoring , FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm , TargetedSpectraExtractor::Comparator
• library_corr : OpenSwath_Scores
• library_dotprod : OpenSwath_Scores
• library_intensity : TransitionTSVFile::TSVTransition , LightTransition
• library_intensity_ : ReactionMonitoringTransition
• library_manhattan : OpenSwath_Scores
• library_norm_manhattan : OpenSwath_Scores
• library_rootmeansquare : OpenSwath_Scores
• library_sangle : OpenSwath_Scores
• LibSVMEncoder() : LibSVMEncoder
• libSVMVectorsToString() : LibSVMEncoder
• libSVMVectorToString() : LibSVMEncoder
• LIFT : Precursor
• LIGHT : Tagging
• LIGHT_CHANNEL_ID_ : O18Labeler
• light_channel_label_ : ICPLLabeler
• LIGHT_FEATURE_MAPID_ : ICPLLabeler , SILACLabeler
• LightBlue : ColorBrewer::Distinct
• lightClone() : SpectrumAccessOpenMS , SpectrumAccessOpenMSCached , SpectrumAccessOpenMSInMemory , SpectrumAccessQuadMZTransforming , SpectrumAccessSqMass , SpectrumAccessTransforming , ISpectrumAccess
• LightCompound() : LightCompound
• LightGreen : ColorBrewer::Distinct
• LightGrey : ColorBrewer::Distinct
• LightTargetedExperiment() : LightTargetedExperiment
• LightTransition() : LightTransition
• limit_offset_ : MZTrafoModel
• limit_power_ : MZTrafoModel
• limit_scale_ : MZTrafoModel
• line_ : BaseException , GlobalExceptionHandler , FuzzyStringComparator::InputLine
• line_column : FuzzyStringComparator::PrefixInfo_
• line_num_1_ : FuzzyStringComparator
• line_num_1_max_ : FuzzyStringComparator
• line_num_2_ : FuzzyStringComparator
• line_num_2_max_ : FuzzyStringComparator
• line_position_ : FuzzyStringComparator::InputLine
• line_str_1_max_ : FuzzyStringComparator
• line_str_2_max_ : FuzzyStringComparator
• LINEAR : MassAnalyzer , MSNumpressCoder , MZTrafoModel
• linear_abs_mass_acc_ : MzMLSqliteHandler
• linear_fp_mass_acc : MSNumpressCoder::NumpressConfig , SqMassFile::SqMassConfig
• linear_gradient_ : Plot2DCanvas , Plot3DCanvas
• LINEAR_WEIGHTED : MZTrafoModel
• LinearInterpolation : InterpolationModel , LinearInterpolation< Key, Value >
• linearInterpolationAtY_() : MassTrace
• LinearRegression() : LinearRegression
• LinearRegressionWithoutIntercept() : LinearRegressionWithoutIntercept
• LinearResampler() : LinearResampler
• LinearResamplerAlign() : LinearResamplerAlign
• links : CsiFingerIdMzTabWriter::CsiAdapterHit
• linkZoom() : TOPPViewBase
• LIQUID : Sample
• list_ : ListTable , ParamXMLHandler
• list_of_ions_matched_ : SpectrumAnnotator
• listDelegate_ : ListEditor
• ListEditor() : ListEditor
• ListEditorDelegate() : ListEditorDelegate
• ListFilterDialog() : ListFilterDialog
• ListTable() : ListTable
• listTable_ : ListEditor
• listWidgetItemClicked_() : TheoreticalSpectrumGenerationDialog
• LIT : MassAnalyzer
• llm_ : PeakIntensityPredictor
• llod_ : AbsoluteQuantitationMethod
• lloq_ : AbsoluteQuantitationMethod
• lm_back_ : TransformationModelInterpolated
• lm_front_ : TransformationModelInterpolated
• LM_XABSOLUTE_YABSOLUTE : Plot1DCanvas
• LM_XABSOLUTE_YPERCENT : Plot1DCanvas
• LM_XPERCENT_YABSOLUTE : Plot1DCanvas
• LM_XPERCENT_YPERCENT : Plot1DCanvas
• load() : AbsoluteQuantitationMethodFile , AbsoluteQuantitationStandardsFile , BaseVisualizer< ObjectType > , CachedmzML , ChromeleonFile , ConsensusXMLFile , CsvFile , CVMappingFile , DTA2DFile , DTAFile , EDTAFile , ExperimentalDesignFile , FASTAFile , FeatureXMLFile , GradientVisualizer , IdXMLFile , IMSAlphabet , IMSAlphabetParser< AlphabetElementType, Container, InputSource > , IndexedMzMLFileLoader , InspectOutfile , OMSFileLoad
• LOAD : XMLHandler
• load() : KroenikFile , MascotGenericFile , MascotInfile , MascotXMLFile , MetaInfoVisualizer , MRMFeaturePickerFile , MRMFeatureQCFile , MS2File , MsInspectFile , MSPFile , MSPGenericFile , MzDataFile , MzIdentMLFile , MzMLFile , MzQuantMLFile , MzTabFile , MzXMLFile , OMSFile , OMSSACSVFile , OMSSAXMLFile , ParamCWLFile , ParamEditor , ParamXMLFile , PepNovoOutfile , PeptideIdentificationVisualizer , PepXMLFile , PepXMLFileMascot , PercolatorInfile , PercolatorOutfile , ProteinIdentificationVisualizer , ProtXMLFile , PTMXMLFile , QcMLFile , SequestOutfile , SpecArrayFile , SqMassFile , SVMData , SvmTheoreticalSpectrumGenerator , SvmTheoreticalSpectrumGeneratorSet , TextFile , ToolDescriptionFile , TOPPASResources , TOPPASScene , TraMLFile , TransformationXMLFile , UnimodXMLFile , XMassFile , XQuestResultXMLFile , XTandemXMLFile
• load_() : CachedmzML
• load_cached_ : FIAMSScheduler
• load_detail_ : XMLHandler
• load_empty_hits_ : OMSSAXMLFile
• load_proteins_ : OMSSAXMLFile
• LOAD_RESULT : TOPPViewBase
• loadAdducts_() : OMSFileLoad
• loadBuffer() : MzMLFile
• loadConsensusColumnHeaders_() : OMSFileLoad
• loadConsensusFeatures() : FileHandler
• loadConsensusFeatures_() : OMSFileLoad
• loadContaminants() : RawMSSignalSimulation
• loadConvexhull_ : FeatureFileOptions
• loadData_() : GradientVisualizer , MetaInfoVisualizer
• loadDataProcessing_() : OMSFileLoad
• loadDBSearchParams_() : OMSFileLoad
• LOADDETAIL : XMLHandler
• loaded_spectra_names_ : MSPGenericFile
• loadExperiment() : FileHandler
• loadExternalToolConfig_() : ToolHandler
• loadFeatureAndSubordinates_() : OMSFileLoad
• loadFeatures() : FileHandler
• loadFeatures_() : OMSFileLoad
• loadFiles() : TOPPASBase , TOPPViewBase
• loadFromOBO() : ControlledVocabulary
• loadIdentifications() : FileHandler
• loadIdentifiedCompounds_() : OMSFileLoad
• loadIdentifiedSequences_() : OMSFileLoad
• loadINI_() : ToolsDialog , TOPPASToolConfigDialog
• loadInputFiles_() : OMSFileLoad
• loadInternalToolConfig_() : ToolHandler
• loadIsotopeModel_() : FeatureFindingMetabo
• loadLibSVMProblem() : LibSVMEncoder
• loadMapMetaData_() : OMSFileLoad
• loadMapMetaDataTemplate_() : OMSFileLoad
• loadMetaData_() : OnDiscMSExperiment
• loadModel() : SVMWrapper
• loadMzML() : SwathFile
• loadMzXML() : SwathFile
• loadObservationMatches_() : OMSFileLoad
• loadObservations_() : OMSFileLoad
• loadParentGroupSets_() : OMSFileLoad
• loadParentSequences_() : OMSFileLoad
• loadPipelineResourceFile() : TOPPASBase
• loadPluginParams() : TVToolDiscovery
• loadPreferences() : TOPPASBase , TOPPViewBase
• loadPreprocessedDB_() : PrecursorIonSelectionPreprocessing
• loadPreprocessing() : PrecursorIonSelectionPreprocessing
• loadProcessingSoftwares_() : OMSFileLoad
• loadProcessingSteps_() : OMSFileLoad
• loadResources() : TOPPASScene
• loadSamples_() : FIAMSScheduler
• loadScoreTypes_() : OMSFileLoad
• loadSize() : FeatureXMLFile , MzMLFile
• loadSplit() : SwathFile
• loadSqMass() : SwathFile
• loadSubordinates_ : FeatureFileOptions
• loadSwathFiles() : TOPPOpenSwathBase
• loadSwathFiles_() : TOPPOpenSwathBase
• loadToolParams() : TVToolDiscovery
• loadTransitionList() : TOPPOpenSwathBase
• local_mz_range_ : FeatureFindingMetabo
• local_rt_range_ : FeatureFindingMetabo
• locality_weight : MRMFeatureSelector::SelectorParameters
• localization_scores : RNPxlReportRow
• LocalLinearMap() : LocalLinearMap
• locateTerm() : SemanticValidator
• location : FileMapping , MzIdentMLDOMHandler::DatabaseInput , MzTabMMSRunMetaData , MzTabMSRunMetaData , Peptide::Modification , LightModification
• lock() : GUILock
• locked_widget_ : GUILock
• LockMass() : InternalCalibration::LockMass
• log2_C_ : SimpleSVM
• log2_gamma_ : SimpleSVM
• log2_p_ : SimpleSVM
• log_ : FeatureFinderAlgorithmPicked , TOPPASBase , TOPPBase , TOPPViewBase
• log_cache_ : LogStreamBuf
• log_cache_counter_ : LogStreamBuf
• log_dest_ : FuzzyStringComparator
• log_eval_no_normalize() : GaussFitter::GaussFitResult , GumbelDistributionFitter::GumbelDistributionFitResult , GumbelMaxLikelihoodFitter::GumbelDistributionFitResult
• log_mode_ : HistogramWidget
• log_model_threshold_ : EnzymaticDigestionLogModel
• log_mz_peaks_ : FLASHDeconvAlgorithm
• log_occupancy : OPXLDataStructs::CrossLinkSpectrumMatch
• log_occupancy_alpha : OPXLDataStructs::CrossLinkSpectrumMatch
• log_occupancy_beta : OPXLDataStructs::CrossLinkSpectrumMatch
• log_p_ : Compomer
• log_prob_ : Adduct
• log_sn_score : OpenSwath_Scores
• log_time_cache_ : LogStreamBuf
• log_transform_ : FeatureDistance
• log_type_ : OMSFile , TOPPBase
• LogConfigHandler() : LogConfigHandler
• logfactorial_() : HyperScore
• logFeatureSpectraNumber() : SiriusAdapterAlgorithm
• logger_ : MzDataHandler , MzIdentMLDOMHandler , MzIdentMLHandler , MzMLHandler , MzQuantMLHandler , MzXMLHandler , TraMLHandler
• logHeader_() : MascotRemoteQuery
• login() : MascotRemoteQuery
• logInSiriusAccount() : SiriusAdapterAlgorithm
• logMz : FLASHDeconvHelperStructs::LogMzPeak
• LogMzPeak : DeconvolvedSpectrum , FLASHDeconvAlgorithm , FLASHDeconvHelperStructs::LogMzPeak , MassFeatureTrace , PeakGroup , Qscore , Qvalue
• logMzpeaks_ : PeakGroup
• logNotify() : LogStreamNotifier
• logOccupancyProb() : XQuestScores
• logOutputFileWritten() : TOPPASScene
• LogState : LogWindow
• LogStream() : LogStream , LogStreamBuf
• LogStreamBuf() : LogStreamBuf
• LogStreamNotifier() : LogStreamNotifier
• logToolCrashed() : TOPPASScene
• logToolFailed() : TOPPASScene
• logToolFinished() : TOPPASScene
• logToolStarted() : TOPPASScene
• logTOPPOutput() : TOPPASScene
• LogType : ProgressLogger
• logTypeToFactoryName_() : ProgressLogger
• LogWindow() : LogWindow
• LONE : CompNovoIonScoringBase
• long_name : MultiplexDeltaMassesGenerator::Label
• lookup_ : MascotXMLHandler , PepXMLFile
• lookupAddFromHeader_() : PepXMLFile
• lookupModInPreferredMods_() : PepXMLFile::AminoAcidModification
• loop : Command
• LOOP : OPXLDataStructs
• loop_arg : Args
• lorentz_() : PeakPickerCWT
• LORENTZ_PEAK : PeakShape
• loss : SvmTheoreticalSpectrumGenerator::IonType
• loss_average_weight_ : Residue
• loss_db_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
• loss_formulas_ : Residue
• Loss_function() : EmgGradientDescent , EmgGradientDescent_friend
• loss_H2O_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
• loss_mono_weight_ : Residue
• loss_names_ : Residue
• loss_NH3_ : SimpleTSGXLMS , TheoreticalSpectrumGeneratorXLMS
• lostFocus() : OpenMSLineEdit
• low_im_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• low_mass_ions_ : Residue
• low_mz_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• lower : SwathMap
• lower_ : LinearRegression
• LOWER_BOUND_ONLY : LPWrapper
• lowerq : SummaryStatistics< T >
• LowessSmoothing() : LowessSmoothing
• lowest : OSWIndexTrace
• lowIM() : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• lowMZ() : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• lp_problem_ : LPWrapper
• LPWrapper() : LPWrapper
• LSI : IonSource
• lWidth : PenaltyFactors