| A_ (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[protected] |
| argument_pointer typedef (defined in BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| argument_reference typedef (defined in BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| argument_type typedef (defined in BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| B_ (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[protected] |
| bijection_ (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[protected] |
|
calculateDefaultBijection() |
BALL::StructureMapper |
|
|
calculateFragmentBijection(const vector< Fragment *
> &A, const vector< Fragment * > &B) |
BALL::StructureMapper |
|
|
calculateRMSD() |
BALL::StructureMapper |
|
|
calculateTransformation() |
BALL::StructureMapper |
|
| const_argument_pointer typedef (defined in
BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| const_argument_reference typedef (defined in
BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| countFragments_(const AtomContainer &ac)
const (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[protected] |
|
finish() |
BALL::UnaryProcessor<
Atom > |
[virtual] |
|
getBijection() const |
BALL::StructureMapper |
|
|
getTransformation() const |
BALL::TransformationProcessor |
|
|
mapFragments(const vector< Fragment * > &A,
const vector< Fragment * > &B, Matrix4x4
*transformation, double upper_bound=8.0, double
lower_bound=2.5) |
BALL::StructureMapper |
|
|
mapProteins(Protein &P1, Protein &P2,
std::map< String, Size > &type_map, Size
&no_matched_ca, double &rmsd, double
upper_bound=8.0, double lower_bound=4.0, double
tolerance=0.6) |
BALL::StructureMapper |
|
| mapResiduesByBackbone(const list< Residue *
> &l1, const list< Residue * > &l2)
(defined in BALL::StructureMapper) |
BALL::StructureMapper |
|
| matchBackboneAtoms(const Residue &r1, const
Residue &r2) (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[static] |
|
matchPoints(const Vector3 &w1, const Vector3
&w2, const Vector3 &w3, const Vector3 &v1,
const Vector3 &v2, const Vector3 &v3) |
BALL::StructureMapper |
[static] |
|
operator()(Atom &atom) |
BALL::TransformationProcessor |
[virtual] |
| result_type typedef (defined in BALL::UnaryFunctor<
Atom, Processor::Result >) |
BALL::UnaryFunctor<
Atom, Processor::Result > |
|
| rmsd_ (defined in BALL::StructureMapper) |
BALL::StructureMapper |
[protected] |
| searchPattern(vector< Fragment * >
&pattern, AtomContainer &composite, double
max_rmsd=4.0, double max_center_tolerance=2.0, double
upper_bound=8.0, double lower_bound=4.0) (defined in
BALL::StructureMapper) |
BALL::StructureMapper |
|
|
set(AtomContainer &A, AtomContainer &B) |
BALL::StructureMapper |
|
|
setTransformation(const Matrix4x4
&transformation) |
BALL::TransformationProcessor |
|
|
start() |
BALL::UnaryProcessor<
Atom > |
[virtual] |
|
StructureMapper() |
BALL::StructureMapper |
|
|
StructureMapper(AtomContainer &A, AtomContainer
&B) |
BALL::StructureMapper |
|
| transformation_ (defined in BALL::TransformationProcessor) |
BALL::TransformationProcessor |
[protected] |
|
TransformationProcessor() |
BALL::TransformationProcessor |
|
|
TransformationProcessor(const Matrix4x4
&transformation) |
BALL::TransformationProcessor |
|
|
UnaryProcessor() |
BALL::UnaryProcessor<
Atom > |
|
|
UnaryProcessor(const UnaryProcessor &) |
BALL::UnaryProcessor<
Atom > |
|
|
~StructureMapper() |
BALL::StructureMapper |
[virtual] |
|
~UnaryProcessor() |
BALL::UnaryProcessor<
Atom > |
[virtual] |
