- paintEngine() :
BALL::VIEW::GLOffscreenTarget
- paintEvent() :
BALL::VIEW::GLRenderWindow ,
BALL::VIEW::Scene ,
BALL::VIEW::SDWidget ,
BALL::VIEW::ColorButton
- paintGL() :
BALL::VIEW::Scene
- Pair6_12InteractionEnergyProcessor() :
BALL::Pair6_12InteractionEnergyProcessor
- Pair6_12RDFIntegrator() :
BALL::Pair6_12RDFIntegrator
- PairExpInteractionEnergyProcessor() :
BALL::PairExpInteractionEnergyProcessor
- PairExpRDFIntegrator() :
BALL::PairExpRDFIntegrator
- Parameters() :
BALL::Parameters
- ParameterSection() :
BALL::ParameterSection
- parse() :
BALL::ExpressionParser ,
BALL::GAFFCESParser ,
BALL::SmartsParser ,
BALL::SmilesParser
- parse_() :
BALL::ConnectedToPredicate ,
BALL::BindingPocketProcessor
- parseAtoms_() :
BALL::FragmentDB
- parseAtomtypeTableFile_() :
BALL::GAFFTypeProcessor
- parseBonds_() :
BALL::FragmentDB
- parseColumnFormat() :
BALL::LineBasedFile
- parseDataFile_() :
BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
- parseDelete_() :
BALL::FragmentDB
- ParsedFunction() :
BALL::ParsedFunction< arg >
- ParsedFunctionDialog() :
BALL::VIEW::ParsedFunctionDialog
- ParseError() :
BALL::Exception::ParseError
- parseESummaryXml_() :
BALL::VIEW::PubChemDialog
- parseItemRecursive_() :
BALL::VIEW::PubChemDialog
- parseLine() :
BALL::PDBFile
- parseLine_() :
BALL::VIEW::PyWidget
- parseProperties_() :
BALL::FragmentDB
- parseRecordANISOU() :
BALL::PDBFile
- parseRecordATOM() :
BALL::PDBFile
- parseRecordAUTHOR() :
BALL::PDBFile
- parseRecordCAVEAT() :
BALL::PDBFile
- parseRecordCISPEP() :
BALL::PDBFile
- parseRecordCOMPND() :
BALL::PDBFile
- parseRecordCONECT() :
BALL::PDBFile
- parseRecordCRYST1() :
BALL::PDBFile
- parseRecordDBREF() :
BALL::PDBFile
- parseRecordEND() :
BALL::PDBFile
- parseRecordENDMDL() :
BALL::PDBFile
- parseRecordEXPDTA() :
BALL::PDBFile
- parseRecordFORMUL() :
BALL::PDBFile
- parseRecordFTNOTE() :
BALL::PDBFile
- parseRecordHEADER() :
BALL::PDBFile
- parseRecordHELIX() :
BALL::PDBFile
- parseRecordHET() :
BALL::PDBFile
- parseRecordHETATM() :
BALL::PDBFile
- parseRecordHETNAM() :
BALL::PDBFile
- parseRecordHETSYN() :
BALL::PDBFile
- parseRecordHYDBND() :
BALL::PDBFile
- parseRecordJRNL() :
BALL::PDBFile
- parseRecordKEYWDS() :
BALL::PDBFile
- parseRecordLINK() :
BALL::PDBFile
- parseRecordMASTER() :
BALL::PDBFile
- parseRecordMODEL() :
BALL::PDBFile
- parseRecordMODRES() :
BALL::PDBFile
- parseRecordMTRIX1() :
BALL::PDBFile
- parseRecordMTRIX2() :
BALL::PDBFile
- parseRecordMTRIX3() :
BALL::PDBFile
- parseRecordOBSLTE() :
BALL::PDBFile
- parseRecordORIGX1() :
BALL::PDBFile
- parseRecordORIGX2() :
BALL::PDBFile
- parseRecordORIGX3() :
BALL::PDBFile
- parseRecordREMARK() :
BALL::PDBFile
- parseRecordREVDAT() :
BALL::PDBFile
- parseRecordSCALE1() :
BALL::PDBFile
- parseRecordSCALE2() :
BALL::PDBFile
- parseRecordSCALE3() :
BALL::PDBFile
- parseRecordSEQADV() :
BALL::PDBFile
- parseRecordSEQRES() :
BALL::PDBFile
- parseRecordSHEET() :
BALL::PDBFile
- parseRecordSIGATM() :
BALL::PDBFile
- parseRecordSIGUIJ() :
BALL::PDBFile
- parseRecordSITE() :
BALL::PDBFile
- parseRecordSLTBRG() :
BALL::PDBFile
- parseRecordSOURCE() :
BALL::PDBFile
- parseRecordSPRSDE() :
BALL::PDBFile
- parseRecordSSBOND() :
BALL::PDBFile
- parseRecordTER() :
BALL::PDBFile
- parseRecordTITLE() :
BALL::PDBFile
- parseRecordTURN() :
BALL::PDBFile
- parseRecordTVECT() :
BALL::PDBFile
- parseRename_() :
BALL::FragmentDB
- PartialChargeBase() :
BALL::PartialChargeBase
- PartialChargeProcessor() :
BALL::PartialChargeProcessor
- partitionFreeSingularEdge() :
BALL::SESTriangulator
- partitionInputData() :
BALL::QSAR::QSARData
- partitionNonFreeSingularEdge() :
BALL::SESTriangulator
- partitionOfCircle() :
BALL::SESTriangulator
- partitionSingularEdge() :
BALL::SESTriangulator
- partitionSingularEdges() :
BALL::SESTriangulator
- partner1Chosen() :
BALL::VIEW::DockDialog
- partner2Chosen() :
BALL::VIEW::DockDialog
- paste() :
BALL::VIEW::MolecularControl ,
BALL::VIEW::PyWidget
- pasteAllowedFor_() :
BALL::VIEW::MolecularControl
- path() :
BALL::FileSystem
- Path() :
BALL::Path
- pause() :
BALL::DockingAlgorithm
- pauseClicked() :
BALL::VIEW::DockProgressDialog
- pauseRendering() :
BALL::VIEW::RenderSetup
- PCMCavFreeEnergyProcessor() :
BALL::PCMCavFreeEnergyProcessor
- PCRModel() :
BALL::QSAR::PCRModel
- PDBAtom() :
BALL::PDBAtom
- PDBAtomIteratorTraits() :
BALL::PDBAtomIteratorTraits
- pdbDownloadChecked() :
BALL::VIEW::DownloadElectronDensity
- PDBFile() :
BALL::PDBFile
- PDBInfo() :
BALL::PDBInfo
- PDBRecords() :
BALL::PDBRecords
- Peak() :
BALL::Peak< PositionType >
- Peak_() :
BALL::GeometricFit::Peak_
- PeakList() :
BALL::PeakList< PT >
- peelNextRing_() :
BALL::RingAnalyser
- peelRings_() :
BALL::RingAnalyser
- pentakisDodecaeder() :
BALL::TriangulatedSphere
- peptide_() :
BALL::Peptides::PeptideBuilder
- PeptideBuilder() :
BALL::Peptides::PeptideBuilder
- PeptideDialog() :
BALL::VIEW::PeptideDialog
- performAStarStep_() :
BALL::AssignBondOrderProcessor
- performBranchAndBound_() :
BALL::AssignBondOrderProcessor
- performGreedy_() :
BALL::AssignBondOrderProcessor
- performRequiredUpdates_() :
BALL::ForceField
- PeriodicBoundary() :
BALL::PeriodicBoundary
- periodicBoundaryClicked() :
BALL::VIEW::AmberConfigurationDialog ,
BALL::VIEW::CharmmConfigurationDialog
- permuteComponentSigns_() :
BALL::PolarSolvation
- PersistenceManager() :
BALL::PersistenceManager
- PersistentObject() :
BALL::PersistentObject
- persistentRead() :
BALL::Composite ,
BALL::PersistentObject ,
BALL::NamedProperty ,
BALL::Atom ,
BALL::AtomContainer ,
BALL::Bond ,
BALL::Chain ,
BALL::Fragment ,
BALL::Molecule ,
BALL::NucleicAcid ,
BALL::Nucleotide ,
BALL::PDBAtom ,
BALL::Protein ,
BALL::Residue ,
BALL::SecondaryStructure ,
BALL::System ,
BALL::TVector2< T > ,
BALL::CrystalInfo
- persistentWrite() :
BALL::Composite ,
BALL::PersistentObject ,
BALL::NamedProperty ,
BALL::Atom ,
BALL::AtomContainer ,
BALL::Bond ,
BALL::Chain ,
BALL::Fragment ,
BALL::Molecule ,
BALL::NucleicAcid ,
BALL::Nucleotide ,
BALL::PDBAtom ,
BALL::Protein ,
BALL::Residue ,
BALL::SecondaryStructure ,
BALL::System ,
BALL::TVector2< T > ,
BALL::CrystalInfo
- phase() :
BALL::TFFT1D< ComplexTraits > ,
BALL::TFFT2D< ComplexTraits > ,
BALL::TFFT3D< ComplexTraits >
- phe_pressed() :
BALL::VIEW::PeptideDialog
- pickingMode_() :
BALL::VIEW::Scene
- pickObjects() :
BALL::VIEW::RenderSetup
- pickObjects1() :
BALL::VIEW::GLRenderer
- pickObjects2() :
BALL::VIEW::GLRenderer
- pickParent_() :
BALL::VIEW::Scene
- PiecewiseFunction() :
BALL::PiecewiseFunction
- PiecewisePolynomial() :
BALL::PiecewisePolynomial
- PierottiCavFreeEnergyProcessor() :
BALL::PierottiCavFreeEnergyProcessor
- PixelFormat() :
BALL::VIEW::PixelFormat
- PixmapItem() :
BALL::VIEW::CanvasWidget::PixmapItem
- placeSubstituent_() :
BALL::SDGenerator
- planarAtom_() :
BALL::GAFFTypeProcessor
- plot() :
BALL::VIEW::DockableRegularData1DWidget ,
BALL::VIEW::DockableRegularData2DWidget ,
BALL::VIEW::SDWidget
- PLSModel() :
BALL::QSAR::PLSModel
- pluginChanged() :
BALL::VIEW::PluginDialog
- PluginDialog() :
BALL::VIEW::PluginDialog
- PluginManager() :
BALL::PluginManager
- PluginModel() :
BALL::VIEW::PluginModel
- pluginsLoaded() :
BALL::VIEW::PluginModel
- Point() :
BALL::VIEW::Point
- PolarSolvation() :
BALL::PolarSolvation
- PolarVdWSurface() :
BALL::PolarVdWSurface
- pop() :
BALL::ResourceEntry::IteratorTraits_
- pop_back() :
BALL::PDBRecords
- popRepresentationToUpdate() :
BALL::VIEW::RepresentationManager
- PositionColorProcessor() :
BALL::VIEW::PositionColorProcessor
- positionTypeChanged() :
BALL::VIEW::LightSettings
- PositivePolarVdWSurface() :
BALL::PositivePolarVdWSurface
- PositiveVdWSurface() :
BALL::PositiveVdWSurface
- Postcondition() :
BALL::Exception::Postcondition
- postProcessAtomTypes_() :
BALL::GAFFTypeProcessor
- postprocessHelices_() :
BALL::PDBFile
- postprocessing_() :
BALL::EFShiftProcessor ,
BALL::HaighMallionShiftProcessor ,
BALL::HBondShiftProcessor ,
BALL::RandomCoilShiftProcessor ,
BALL::EmpiricalHSShiftProcessor
- postprocessRandomCoils_() :
BALL::PDBFile
- postprocessSheetsTurns_() :
BALL::PDBFile
- postprocessSSBonds_() :
BALL::PDBFile
- Potential1210() :
BALL::Potential1210
- POVColorRGBA() :
BALL::VIEW::POVRenderer
- POVFinish() :
BALL::VIEW::POVRenderer
- POVRenderer() :
BALL::VIEW::POVRenderer
- POVVector3() :
BALL::VIEW::POVRenderer
- PQ_Entry_() :
BALL::AssignBondOrderProcessor::PQ_Entry_
- preassignPenaltyClasses_() :
BALL::AssignBondOrderProcessor
- PreciseTime() :
BALL::PreciseTime
- precisionBoxChanged() :
BALL::VIEW::DisplayProperties
- precisionSliderChanged() :
BALL::VIEW::DisplayProperties
- precomputeAtomProperties_() :
BALL::GAFFTypeProcessor
- precomputeBondLengthPenalties_() :
BALL::AssignBondOrderProcessor
- precomputeBondProperties_() :
BALL::GAFFTypeProcessor
- preComputeBonds_() :
BALL::HBondProcessor
- Precondition() :
BALL::Exception::Precondition
- predecessor() :
BALL::RingAnalyser::Ring
- predict() :
BALL::QSAR::ALLModel ,
BALL::QSAR::FitModel ,
BALL::QSAR::GPModel ,
BALL::QSAR::KernelModel ,
BALL::QSAR::LinearModel ,
BALL::QSAR::LogitModel ,
BALL::QSAR::Model ,
BALL::QSAR::SNBModel ,
BALL::QSAR::LDAModel ,
BALL::QSAR::NBModel
- PredictionConfiguration() :
BALL::QSAR::PredictionConfiguration
- Preferences() :
BALL::VIEW::Preferences
- PreferencesEntry() :
BALL::VIEW::PreferencesEntry
- PreferencesObject() :
BALL::PreferencesObject
- prepare_() :
BALL::SDGenerator
- prepareBufferedRendering() :
BALL::VIEW::BufferedRenderer
- prepareGridTextures() :
BALL::VIEW::RenderSetup ,
BALL::VIEW::Scene
- prepareRendering() :
BALL::VIEW::GLOffscreenTarget ,
BALL::VIEW::RenderWindow< taPixelDatatype > ,
BALL::VIEW::RenderTarget
- prepareUpscaling() :
BALL::VIEW::GLOffscreenTarget
- prepend() :
BALL::Chain ,
BALL::Nucleotide ,
BALL::Chain ,
BALL::Residue ,
BALL::AtomContainer ,
BALL::Molecule ,
BALL::Nucleotide ,
BALL::SecondaryStructure ,
BALL::System ,
BALL::Chain ,
BALL::SecondaryStructure
- prependChild() :
BALL::Composite
- preProcessing() :
BALL::SESTriangulator ,
BALL::RSComputer ,
BALL::SolventAccessibleSurface ,
BALL::SESComputer
- PrincipalMomentOfInertia() :
BALL::PrincipalMomentOfInertia
- PrincipalMomentOfInertiaX() :
BALL::PrincipalMomentOfInertiaX
- PrincipalMomentOfInertiaY() :
BALL::PrincipalMomentOfInertiaY
- PrincipalMomentOfInertiaZ() :
BALL::PrincipalMomentOfInertiaZ
- print() :
BALL::VIEW::PixelFormat
- printAPS() :
BALL::GAFFCESParser::APSMatcher
- printCursorPosition_() :
BALL::VIEW::PyWidget
- printEffectors_() :
BALL::HaighMallionShiftProcessor ,
BALL::HBondShiftProcessor ,
BALL::EFShiftProcessor
- printEnergy() :
BALL::EnergyMinimizer
- printMatrix() :
BALL::QSAR::QSARData
- printParameters_() :
BALL::EFShiftProcessor ,
BALL::EmpiricalHSShiftProcessor ,
BALL::HaighMallionShiftProcessor ,
BALL::HBondShiftProcessor
- printScene() :
BALL::VIEW::Scene
- printSelectionInfos() :
BALL::VIEW::MainControl
- printTargets_() :
BALL::EFShiftProcessor ,
BALL::HaighMallionShiftProcessor ,
BALL::EmpiricalHSShiftProcessor ,
BALL::HBondShiftProcessor
- printUCK() :
BALL::UCK
- pro_pressed() :
BALL::VIEW::PeptideDialog
- probeIntersection() :
BALL::SESSingularityCleaner
- probeRadiusChanged() :
BALL::VIEW::ModelSettingsDialog
- proceed() :
BALL::DockingAlgorithm
- processEvent_() :
BALL::VIEW::TestFramework
- processEvents() :
BALL::VIEW::MainControl
- processMoveModeMouseEvents_() :
BALL::VIEW::Scene
- processRotateModeMouseEvents_() :
BALL::VIEW::Scene
- processShiftLine_() :
BALL::NMRStarFile
- Product() :
BALL::Product< First, Second, DataType >
- project() :
BALL::PairExpRDFIntegrator ,
BALL::Pair6_12RDFIntegrator
- projectionModeChanged() :
BALL::VIEW::RenderSetup ,
BALL::VIEW::Scene
- projectionTransformationChanged() :
BALL::VIEW::StageSettings
- prolineActivated() :
BALL::VIEW::PeptideDialog
- prolineDeactivated() :
BALL::VIEW::PeptideDialog
- PropertiesForShift_() :
BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- Property() :
BALL::SmartsParser::SPAtom::Property
- PropertyError() :
BALL::QSAR::Exception::PropertyError
- PropertyManager() :
BALL::PropertyManager
- Protein() :
BALL::Protein
- ProteinIteratorTraits() :
BALL::ProteinIteratorTraits
- protomode() :
BALL::VIEW::ExportGeometryDialog
- proxyEnabled() :
BALL::VIEW::NetworkPreferences
- proxyModeChanged() :
BALL::VIEW::NetworkPreferences
- PTE_() : BALL::PTE_
- PTEDialog() :
BALL::VIEW::PTEDialog
- PubChemDialog() :
BALL::VIEW::PubChemDialog
- push() :
BALL::ResourceEntry::IteratorTraits_ ,
BALL::RingPerceptionProcessor::PathMessage_
- push_back() :
BALL::PDBRecords
- pushbackNCS() :
BALL::CrystalInfo
- pushBackNormal() :
BALL::TSurface< T >
- pushBackTriangle() :
BALL::TSurface< T >
- pushBackVertex() :
BALL::TSurface< T >
- pushCFS_() :
BALL::SDGenerator
- pushConcaveEdge() :
BALL::SESComputer
- pushVertex() :
BALL::SESComputer
- put() :
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::PersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::PersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::PersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::PersistenceManager ,
BALL::XDRPersistenceManager ,
BALL::TextPersistenceManager
- putbackLine() :
BALL::QSAR::ConfigIO
- PyColorRGBAVector() :
BALL::PyColorRGBAVector
- PyCompositeList() :
BALL::PyCompositeList
- PyDatasetVector() :
BALL::PyDatasetVector
- PyIndexList() :
BALL::PyIndexList
- PyInterpreter() :
BALL::PyInterpreter
- PythonHighlighter() :
BALL::VIEW::PythonHighlighter
- PythonSettings() :
BALL::VIEW::PythonSettings
- PythonValidator() :
BALL::VIEW::PythonValidator
- PyWidget() :
BALL::VIEW::PyWidget
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