- p -

P : BALL::Rotamer
p : BALL::TCircle3< T > , BALL::TPlane3< T > , BALL::TSphere3< T > , BALL::TLine3< T > , BALL::TriangulatedSphere::Face
p_ : BALL::QSAR::LibsvmModel
P_ : BALL::RingPerceptionProcessor
p_i_ : BALL::ConjugateGradientMinimizer
p_t_ : BALL::ConjugateGradientMinimizer
pair_charges_ : BALL::GeneralizedBornModel
pair_distances_ : BALL::GeneralizedBornModel
pair_items : BALL::CIFFile::SaveFrame
pair_list_ : BALL::GeneralizedBornModel
par1 : BALL::QSAR::Kernel
par2 : BALL::QSAR::Kernel
param : BALL::QSAR::LibsvmModel::svm_model
parameterDefaults : BALL::QSAR::RegistryEntry
parameterNames : BALL::QSAR::RegistryEntry
parameters_ : BALL::ShiftModel2D , BALL::ShiftModule , BALL::QSAR::LibsvmModel , BALL::ClaverieParameter , BALL::ForceField , BALL::MMFF94OutOfPlaneBend , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::MMFF94Torsion , BALL::ShiftModel , BALL::ShiftModel1D
parameters_by_row_ : BALL::MMFF94StretchBendParameters
parameters_initialized_ : BALL::AmberFF , BALL::CharmmFF , BALL::MMFF94
parent : BALL::HashGridBox3< Item > , BALL::GAFFCESParser::CESPredicate
parent_ : BALL::Composite , BALL::NMRStarFile::NMRAtomDataSet , BALL::ResourceEntry , BALL::ConnectedToPredicate::CTPNode , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::VIEW::AtomOverview , BALL::VIEW::BondProperties , BALL::VIEW::ConnectionObject
PARENT_DIRECTORY : BALL::FileSystem
parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
parents_ : BALL::RingPerceptionProcessor
parity : BALL::MOLFile::AtomStruct
pars_ : BALL::Bruker1DFile
PARSE_INI_FILE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
PARSE_PARTIAL_CHARGES : BALL::PDBFile::Option , BALL::PDBFile::Default
parse_partial_charges_ : BALL::PDBFile
parser_ : BALL::GAFFCESParser::CESPredicate
parsf1_ : BALL::Bruker2DFile
parsf2_ : BALL::Bruker2DFile
partial_charge : BALL::PDB::RecordATOM
partner_atom : BALL::PDB::RecordSLTBRG
partner_id : BALL::Kekuliser::AtomInfo
partner_residue : BALL::PDB::RecordSSBOND
partner_type_to_htype_ : BALL::MMFF94AtomTyper
past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
paste_action_ : BALL::VIEW::MolecularControl
paste_id_ : BALL::VIEW::MolecularControl
path_ : BALL::Path , BALL::SimpleDownloaderHelper::HelperThread
path_array_ : BALL::Path
path_array_valid_ : BALL::Path
PATH_SEPARATOR : BALL::FileSystem
pattern_ : BALL::RegularExpression
pause_ : BALL::DockingAlgorithm
pbcis_ : BALL::MMFF94ESParameters
pbuf_ : BALL::LogStreamBuf
pcm_ : BALL::NonpolarSolvation
pcount : BALL::TriangulatedSphere::Face
PDB_atom_map_ : BALL::PDBFile
pdb_id : BALL::PDB::AdditionalAtomInfo
peak_list_ : BALL::Experiment< PeakListType >
peak_set_ : BALL::GeometricFit
peaklist_ : BALL::CreateSpectrumProcessor
peaks_ : BALL::ShiftModel1D , BALL::ShiftModel2D
peeling_order_ : BALL::RingAnalyser
penalties_ : BALL::AssignBondOrderProcessor , BALL::FPTBondOrderStrategy
penalty : BALL::FPTBondOrderStrategy::Assignment_
PENALTY_MOBILE : BALL::GeometricFit::Option , BALL::GeometricFit::Default
PENALTY_STATIC : BALL::GeometricFit::Option , BALL::GeometricFit::Default
period_ : BALL::Element
periodic_boundary : BALL::ForceField
PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
permutation : BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound >::QuickBBState
phase : BALL::AmberTorsion::SingleAmberTorsion , BALL::CharmmTorsion::SingleCharmmTorsion , BALL::CosineTorsion::SingleValues , BALL::QuadraticImproperTorsion::Values
phi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
phi_grid : BALL::FDPB
PHI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
PHI_MIN : BALL::GeometricFit::Option , BALL::GeometricFit::Default
phis_ : BALL::MMFF94ESParameters
PI : BALL::Constant
pick_select_ : BALL::VIEW::Scene
picking_action_ : BALL::VIEW::Scene
picking_mode_ : BALL::VIEW::GLRenderer
pilp : BALL::MMFF94AtomType
pitch : BALL::VIEW::FrameBufferFormat
pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
pixelFormat : BALL::VIEW::FrameBufferFormat
pixmap_ : BALL::VIEW::CanvasWidget::PixmapItem
planBackward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
planCalculated_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
PLANCK : BALL::Constant
plane_ : BALL::VIEW::SetClippingPlane
plane_to_item_ : BALL::VIEW::GeometricControl
planForward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
plus_ : BALL::DSN6File
pm_ : BALL::Client , BALL::ObjectCreator
point : BALL::RSComputer::ProbePosition , BALL::SESSingularityCleaner::ProbeIntersection
point_ : BALL::TBox3< T > , BALL::SASVertex , BALL::SESVertex , BALL::TrianglePoint , BALL::SESTriangulator , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
point_ptr_ : BALL::VIEW::Sphere
pointer_list_ : BALL::PersistenceManager
pointer_map_ : BALL::PersistenceManager
points : BALL::VIEW::GridVisualisation
points_ : BALL::TriangulatedSurface
POLAR : BALL::SLICKEnergy::Option , BALL::SLICKEnergy::Default , BALL::SLICKScore::Option , BALL::SLICKScore::Default
POLAR_AVG : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_CHARGE_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
polar_color_ : BALL::VIEW::ResidueTypeColorProcessor
POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_GB : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_METHOD : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
POLAR_RADIUS_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
polymer_class : BALL::NMRStarFile::MonomericPolymer
pool_ : BALL::SmartsMatcher
port_ : BALL::Client , BALL::TCPServer , BALL::VIEW::ServerPreferences , BALL::VIEW::ServerWidget::BALLViewServer , BALL::VIEW::ServerWidget
pos_ : BALL::SmartsMatcher::RecStruct_
pos_C : BALL::HBondProcessor::ResidueData
pos_H : BALL::HBondProcessor::ResidueData
pos_N : BALL::HBondProcessor::ResidueData
pos_O : BALL::HBondProcessor::ResidueData
posbridges_ : BALL::SecondaryStructureProcessor
position : BALL::MOL2File::AtomStruct , BALL::MOLFile::AtomStruct , BALL::BindingPocketProcessor::Sphere_
position_ : BALL::Peak< PositionType > , BALL::Atom::BondIteratorTraits , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::Composite::CompositeIteratorTraits , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::HashSet< Key >::IteratorTraits , BALL::INIFile::IteratorTraits_ , BALL::ResourceEntry::IteratorTraits_ , BALL::Atom , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::VIEW::LightSource
position_data_size : BALL::TRRFile::TRRHeader
POSITION_VALUE_NA : BALL::NMRStarFile
possible_buried_polar_interactions_ : BALL::BuriedPolar
possible_hydrogen_bonds_ : BALL::HydrogenBond
possible_interactions_ : BALL::AromaticRingStacking , BALL::CHPI
possible_lipophilic_interactions_ : BALL::Lipophilic
possible_metal_interactions_ : BALL::ChemScoreMetal
potential_energy_ : BALL::SnapShot
potential_grid_ : BALL::VIEW::FieldLineCreator
pov_nr_ : BALL::VIEW::Scene
pre_translation_a_ : BALL::GeometricFit
pre_translation_b_ : BALL::GeometricFit
precision_ : BALL::TRRFile
predicate : BALL::ExpressionParser::SyntaxTree
predicate_ : BALL::ExpressionTree , BALL::CompositeIteratorTraits , BALL::BaseFilterIterator< Predicate, IteratorBase >
PREDICTION_METHOD : BALL::HBondProcessor::Option , BALL::HBondProcessor::Default
predQualFetcher_ : BALL::QSAR::RegressionValidation
preferences_ : BALL::VIEW::DisplayProperties , BALL::VIEW::PyWidget
preferences_action_ : BALL::VIEW::MainControl
preferences_dialog_ : BALL::VIEW::MainControl
preferences_file_ : BALL::VIEW::MainControl
prefix : BALL::LogStreamBuf::StreamStruct
prefix_ : BALL::VIEW::DemoTutorialDialog , BALL::VIEW::DownloadPDBFile , BALL::RuleEvaluator
pres_size : BALL::TRRFile::TRRHeader
PRESSURE : BALL::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default
prev_shift_val_ : BALL::ShiftedLVMMMinimizer
preview_ : BALL::VIEW::Scene
previous_ : BALL::Composite
primitive_manager_ : BALL::VIEW::MainControl
print_expected : BALL::QSAR::PredictionConfiguration
PRINT_TIMING : BALL::FDPB::Default , BALL::FDPB::Option
priority_queue_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
probA : BALL::QSAR::LibsvmModel::svm_model
probabilities_ : BALL::QSAR::NBModel
probB : BALL::QSAR::LibsvmModel::svm_model
probe_intersections_ : BALL::SESSingularityCleaner
PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
probe_positions_ : BALL::RSComputer
PROBE_RADIUS : BALL::NonpolarSolvation::Default , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::FDPB::Default , BALL::ReissCavFreeEnergyProcessor::Default , BALL::NumericalSAS::Default , BALL::UhligCavFreeEnergyProcessor::Default , BALL::NumericalSAS::Option , BALL::UhligCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::FDPB::Option , BALL::NonpolarSolvation::Option , BALL::PCMCavFreeEnergyProcessor::Option
probe_radius_ : BALL::SurfaceProcessor , BALL::NonpolarSolvation , BALL::VIEW::AddSurfaceModel , BALL::ReducedSurface
PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
probe_weight : BALL::BindingPocketProcessor::Sphere_
processing_message_queue_ : BALL::VIEW::ConnectionObject
processor_ : BALL::NonpolarSolvation , BALL::VIEW::AtomOverview
prod_ : BALL::DSN6File
progress_bar_ : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
progress_dialog_ : BALL::VIEW::DockingController
project_ : BALL::VIEW::HelpViewer , BALL::VIEW::ShowHelpMessage
project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
projection_mode_ : BALL::VIEW::Camera
prop_ : BALL::DNAMutator
properties_ : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::SmartsParser::SPAtom , BALL::Composite
properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
PROPERTY__RING_CURRENT_SHIFT : BALL::HaighMallionShiftProcessor , BALL::JohnsonBoveyShiftProcessor
PROPERTY__SHIFT : BALL::ShiftModule
property_files_ : BALL::EmpiricalHSShiftProcessor
property_pairs_ : BALL::EmpiricalHSShiftProcessor
protein_ : BALL::VIEW::PeptideDialog
protein_clash_rad_ : BALL::BindingPocketProcessor
protein_grid_ : BALL::BindingPocketProcessor
proteinname_ : BALL::Peptides::PeptideBuilder
proton_list_ : BALL::JohnsonBoveyShiftProcessor , BALL::AnisotropyShiftProcessor
PROTON_MASS : BALL::Constant
proxy_model_ : BALL::VIEW::ShortcutTableView
PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default , BALL::Peptides::NameConverter::Option
pseudo_conventions_ : BALL::Peptides::NameConverter
pseudo_conversion_table_ : BALL::Peptides::NameConverter
psi_ : BALL::ResidueRotamerSet , BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor
PSI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
PSI_MIN : BALL::GeometricFit::Default , BALL::GeometricFit::Option
pte_ : BALL::VIEW::EditFunctions
ptr_ : BALL::TContourSurface< T >::Cube
pubchem_rest_url_ : BALL::PubChemDownloader
pw_ : BALL::VIEW::PyWidget::MyLineEdit , BALL::VIEW::PyWidget::MyTextEdit
PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
pw_grid_ : BALL::BindingPocketProcessor
PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
PW_SQUARE_WELL : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
python_format : BALL::VIEW::PythonHighlighter
python_keywords : BALL::VIEW::PythonHighlighter
python_line_ : BALL::VIEW::TestFramework
python_patterns : BALL::VIEW::PythonHighlighter
python_settings_ : BALL::VIEW::PyWidget