Here is a list of all class members with links to the classes they belong to:

- f -

• f : Base64::Reinterpreter32_ , Base64::Reinterpreter64_ , IsotopeWavelet::fi_
• f_ : FASTAContainer< TFI_File >
• f_cf_ids_ : MzQuantMLHandler
• f_f_obj_ : MzQuantMLHandler
• F_HULL : LayerData
• F_HULLS : LayerData
• f_max_ : PrecursorIonSelectionPreprocessing
• F_UNASSIGNED : LayerData
• FA : IonSource
• FAB : IonSource
• factor_ : ParentPeakMower , SpectrumCheapDPCorr
• Factory() : Factory< FactoryProduct >
• FactoryType : Factory< FactoryProduct >
• FailedAPICall() : FailedAPICall
• fall : TIC::Result
• false_discovery_rate : MzTabMetaData
• FalseDiscoveryRate() : FalseDiscoveryRate
• far_ : Plot3DOpenGLCanvas
• FARADAYCUP : IonDetector
• FASTA : FileTypes
• fasta_entry : ProteinResolver::ProteinEntry
• FASTAContainer() : FASTAContainer< TFI_File > , FASTAContainer< TFI_Vector >
• FASTAEntry() : FASTAFile::FASTAEntry
• FASTAFile() : FASTAFile
• fatal_streams_ : LogConfigHandler
• fatalError() : XMLHandler , XMLValidator
• FD : IonSource
• fdr_threshold : IdentificationSummary::UniqueID
• fdr_xprophet_() : XFDRAlgorithm
• FEASIBLE : LPWrapper
• feat_finder_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• feat_score_ : FeatureHypothesis
• feature : AbsoluteQuantitationStandards::featureConcentration
• Feature() : Feature
• feature() : KDTreeFeatureMaps
• FEATURE : OSWHierarchy
• feature : PSLPFormulation::IndexTriple , QTCluster::Element , QTCluster::Neighbor
• feature0_charge_ : ChargePair
• feature0_index_ : ChargePair
• feature1_charge_ : ChargePair
• feature1_index_ : ChargePair
• feature_ : FeatureEditDialog , FeatureOpenMS , GridFeature
• feature_compare_ : FeatureFinderAlgorithmMetaboIdent , FeatureFinderIdentificationAlgorithm
• feature_count : FeatureSummary::Result
• feature_distance_ : FeatureGroupingAlgorithmKD , QTClusterFinder
• feature_filter_ : FeatureFinderAlgorithmMetaboIdent
• feature_filter_peptides_ : FeatureFinderIdentificationAlgorithm
• feature_filter_quality_ : FeatureFinderIdentificationAlgorithm
• FEATURE_GROUPING : DataProcessing
• feature_id : CsiFingerIdMzTabWriter::CsiAdapterIdentification , SiriusMzTabWriter::SiriusAdapterIdentification
• FEATURE_ID_MULTIPLE_DIVERGENT : BaseFeature
• FEATURE_ID_MULTIPLE_SAME : BaseFeature
• FEATURE_ID_NONE : BaseFeature
• FEATURE_ID_SINGLE : BaseFeature
• feature_index_ : GridFeature
• feature_map_ : FeatureFinderMultiplexAlgorithm , MRMFeature
• feature_maps : FeatureMapping::FeatureMappingInfo
• feature_maps_ : MSQuantifications::Assay , MSQuantifications , MSSim
• feature_max : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• feature_min : SvmTheoreticalSpectrumGenerator::SvmModelParameterSet
• feature_name_ : AbsoluteQuantitationMethod
• FeatureBoundsMap : FeatureFinderAlgorithmMetaboIdent
• FeatureDeconvolution() : FeatureDeconvolution
• FeatureDistance() : FeatureDistance
• FeatureEditDialog() : FeatureEditDialog
• FeatureFileOptions() : FeatureFileOptions
• FeatureFinder() : FeatureFinder
• FeatureFinderAlgorithm() : FeatureFinderAlgorithm
• FeatureFinderAlgorithmIsotopeWavelet() : FeatureFinderAlgorithmIsotopeWavelet
• FeatureFinderAlgorithmMetaboIdent() : FeatureFinderAlgorithmMetaboIdent
• FeatureFinderAlgorithmMRM() : FeatureFinderAlgorithmMRM
• FeatureFinderAlgorithmPicked() : FeatureFinderAlgorithmPicked
• FeatureFinderIdentificationAlgorithm() : FeatureFinderIdentificationAlgorithm
• FeatureFinderMetaboIdentCompound() : FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound
• FeatureFinderMultiplexAlgorithm() : FeatureFinderMultiplexAlgorithm
• FeatureFindingMetabo() : FeatureFindingMetabo
• FeatureGroup : FeatureFinderAlgorithmMetaboIdent
• FeatureGroupingAlgorithm() : FeatureGroupingAlgorithm
• FeatureGroupingAlgorithmKD() : FeatureGroupingAlgorithmKD
• FeatureGroupingAlgorithmLabeled() : FeatureGroupingAlgorithmLabeled
• FeatureGroupingAlgorithmQT() : FeatureGroupingAlgorithmQT
• FeatureGroupingAlgorithmUnlabeled() : FeatureGroupingAlgorithmUnlabeled
• FeatureHandle() : FeatureHandle
• FeatureHandleMutable_() : FeatureHandle::FeatureHandleMutable_
• FeatureHypothesis() : FeatureHypothesis
• FeatureIterator_ : LayerStatisticsDialog
• FeatureKDTree : KDTreeFeatureMaps
• FeatureListType : MRMFeature
• FeatureMap() : FeatureMap
• FeatureMapSharedPtrType : LayerData , PlotCanvas , TOPPViewBase , TVControllerBase
• FeatureMapType : FeatureDeconvolution , LayerData , MetaboliteFeatureDeconvolution , PlotCanvas , PlotWidget , TOPPViewBase , TVControllerBase
• FeatureOpenMS() : FeatureOpenMS
• features : MSstatsFile::AggregatedConsensusInfo , TriqlerFile::AggregatedConsensusInfo
• features_ : FeatureFinderAlgorithm , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , KDTreeFeatureMaps , LayerData , MRMFeature , MRMFeatureOpenMS , OSWPeptidePrecursor
• FeatureSummary() : FeatureSummary
• FeatureType : ConsensusMap , FeatureDeconvolution , FeatureMap , MetaboliteFeatureDeconvolution , PlotCanvas , MRMScoring
• FeatureType_ : ILPDCWrapper
• FEATUREXML : FileTypes
• FeatureXMLFile() : FeatureXMLFile , IdXMLFile
• fetchSpectrumSwath() : OpenSwathScoring
• ff_ : FeatureFinderAlgorithm , FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked
• FI : IonSource
• FIAMSDataProcessor() : FIAMSDataProcessor
• FIAMSScheduler() : FIAMSScheduler
• FIB : IonSource
• fid : SiriusMSFile::CompoundInfo
• FidHandler() : FidHandler
• field : DataFilters::DataFilter
• field_changed_() : DataFilterDialog
• FII : IonSource
• FILE : StreamHandler
• file_ : MQEvidence , Bzip2Ifstream , BaseException , GlobalExceptionHandler , HDF5Connector , XMLHandler
• file_current_index_ : Bzip2InputStream , GzipInputStream
• file_dialog_text_ : LayerAnnotatorBase
• file_format_filter_ : InputFile
• file_name_ : ListEditorDelegate , TOPPASResource , TOPPASScene
• file_origin_to_idx_ : IDMergerAlgorithm
• file_path_ : DocumentIdentifier , DocumentIdentifierVisualizer
• file_size_ : SourceFile , SourceFileVisualizer
• file_stream_ : CSVWriter
• file_type_ : DocumentIdentifier , DocumentIdentifierVisualizer , SourceFile , SourceFileVisualizer
• fileChanged() : FileWatcher
• fileChanged_() : TOPPViewBase
• FileEmpty() : FileEmpty
• fileList() : File
• FileMapping() : FileMapping
• filename : ConsensusMap::ColumnHeader , LayerData
• filename_ : MQEvidence , CachedmzML , FASTAContainer< TFI_File > , FIAMSScheduler , INIFileEditorWindow , IndexedMzMLHandler , MzMLSqliteHandler , MzMLSqliteSwathHandler
• fileName_ : ParamEditorDelegate
• filename_ : MSDataSqlConsumer , MzTab::CMMzTabStream , MzTab::IDMzTabStream , OnDiscMSExperiment , OSWFile , ToolsDialog , TOPPASToolConfigDialog , XMLValidator
• filename_cached_ : CachedmzML
• filenames : TOPPASVertex::VertexRoundPackage
• filenames_ : File::TemporaryFiles_ , TOPPASVertex::TOPPASFilenames
• fileNamesValid() : TOPPASInputFileListVertex
• FileNameTooLong() : FileNameTooLong
• FileNotFound() : FileNotFound
• FileNotReadable() : FileNotReadable
• FileNotWritable() : FileNotWritable
• fileOpen() : QApplicationTOPP
• fileParamValidityCheck_() : TOPPBase
• files_total_ : TOPPASOutputFileListVertex
• files_written_ : TOPPASOutputFileListVertex
• fileSize_ : FASTAFile
• filestream_ : IndexedMzMLHandler
• FileTypeList() : FileTypes::FileTypeList
• FileWatcher() : FileWatcher
• fill_data_ : PeakFileOptions
• fillCalibrants() : InternalCalibration
• fillChromatogramData_() : MzMLHandler
• fillComboBox_() : BaseVisualizerGUI
• fillComboBoxes_() : TOPPASIOMappingDialog
• fillData_() : MzDataHandler
• fillDensities() : PosteriorErrorProbabilityModel
• filled_ : IDMergerAlgorithm
• fillExtendedResidueTable_() : IntegerMassDecomposer< ValueType, DecompositionValueType >
• fillFromInputLine() : FuzzyStringComparator::StreamElement_
• fillGaps_() : CoarseIsotopePatternGenerator
• fillID_() : InternalCalibration
• fillIDs_() : InternalCalibration
• fillIndistinguishableGroupsWithSingletons() : ProteinIdentification
• fillInputVector_() : IsobaricIsotopeCorrector
• fillIntensities() : BaseModel< D >
• fillIntensity() : BaseModel< D >
• fillLabelMasterList_() : MultiplexDeltaMassesGenerator
• fillLeft() : String , StringUtils
• fillLogDensities() : PosteriorErrorProbabilityModel
• fillLogDensitiesGumbel() : PosteriorErrorProbabilityModel
• fillRight() : String , StringUtils
• fillRow_() : SpectraIDViewTab
• fillVectorsOfMessagePassers() : MessagePasserFactory< Label >
• Filter : FileTypes
• filter() : GaussFilter , GaussFilterAlgorithm , MorphologicalFilter , MultiplexFilteringCentroided , MultiplexFilteringProfile , SavitzkyGolayFilter
• filter_ : DataFilterDialog
• filter_dock_widget_ : TOPPViewBase
• filter_list_ : TOPPViewBase
• filter_passed : PeptideIndexing::FoundProteinFunctor
• filter_rejected : PeptideIndexing::FoundProteinFunctor
• filter_threshold_ : PeptideIdentificationVisualizer , ProteinIdentificationVisualizer
• FilterableList() : FilterableList
• filterAveragineModel_() : MultiplexFiltering , MultiplexFilteringProfile
• filterBasedOnMolFormAdductOccurrence_() : MetaboTargetedAssay
• filterBasedOnTotalOccurrence_() : MetaboTargetedAssay
• filterByBasenames() : ExperimentalDesign
• filterByMissedCleavages() : EnzymaticDigestion
• filterByPeakWidth() : ElutionPeakDetection
• filterCCs_() : MapAlignmentAlgorithmKD
• filterChanged() : FilterableList , FilterList
• filterDecomps_() : CompNovoIdentificationBase
• filterDetectability() : DetectabilitySimulation
• filterEdit_() : FilterList
• filterEdited_() : FilterableList
• filterExperiment() : GaussFilter , MorphologicalFilter , SavitzkyGolayFilter
• FilterFeatureMap() : MRMFeatureFilter
• FilterFeatureMapBackgroundInterference() : MRMFeatureFilter
• FilterFeatureMapPercRSD() : MRMFeatureFilter
• filterFeatures_() : FeatureFinderIdentificationAlgorithm
• filterFeaturesFinalizeAssay_() : FeatureFinderIdentificationAlgorithm
• FilterFunctor() : FilterFunctor
• filterGroupsByScore() : IDFilter
• filterHits_() : MetaDataBrowser
• filterHitsByRank() : IDFilter
• filterHitsByScore() : IDFilter
• FILTERING : DataProcessing
• FilterList() : FilterList
• filterMinMaxTransitionsCompound() : MRMAssay
• FilterOperation : DataFilters
• filterPeakMap() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
• filterPeakPositions_() : MultiplexFiltering
• filterPeakSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower , WindowMower
• filterPeakSpectrumForTopNInJumpingWindow() : WindowMower
• filterPeakSpectrumForTopNInSlidingWindow() : WindowMower
• filterPeptideCorrelation_() : MultiplexFiltering , MultiplexFilteringProfile
• filterPeptideEvidences() : IDFilter::DigestionFilter , IDFilter
• FilterPeptideEvidences() : IDFilter
• filterPeptideIds_() : PrecursorIonSelection
• filterPeptidesByCharge() : IDFilter
• filterPeptidesByLength() : IDFilter
• filterPeptidesByMZ() : IDFilter
• filterPeptidesByMZError() : IDFilter
• filterPeptidesByRT() : IDFilter
• filterPeptidesByRTPredictPValue() : IDFilter
• filterPeptideSequences() : IDFilter::PeptideDigestionFilter
• filterPermuts_() : CompNovoIdentificationBase
• filterPrecursorsByTags() : OPXLHelper
• filterProtIds_() : PrecursorIonSelection
• filterQueryMatchesByScore() : IDFilter
• filterRange() : MorphologicalFilter
• filters : LayerData
• filters_ : DataFilters , FilterList
• filterSpectrum() : BernNorm , MarkerMower , NLargest , Normalizer , ParentPeakMower , Scaler , SqrtMower , ThresholdMower
• filterTaxonomyIdentifier_() : PrecursorIonSelectionPreprocessing
• FilterType : DataFilters
• filterUnreferencedDecoysCompound() : MRMAssay
• final_MS_ : MassAnalyzerVisualizer
• final_MS_exponent_ : MassAnalyzer
• final_score : ConsensusIDAlgorithm::HitInfo
• finalizeCluster() : QTCluster
• finalized_ : QTCluster
• find() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , File
• find_exact() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• find_nearest() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• find_nearest_if() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• find_within_range() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
• findBestIsotopeFit_() : FeatureFinderAlgorithmPicked
• findByIndex() : SpectrumLookup
• findByNativeID() : SpectrumLookup
• findByReference() : SpectrumLookup
• findByRegExpMatch_() : SpectrumLookup
• findByRT() : SpectrumLookup
• findByScanNumber() : SpectrumLookup
• findClosestPeak_() : PeakPickerMRM
• findCommonMetaKeys() : MetaInfoInterfaceUtils
• findComponentFeature_() : AbsoluteQuantitationStandards
• findConnectedComponent() : PeptideProteinResolution
• findDatabase() : File
• findDecoyString() : DecoyHelper
• findDoc() : File
• findEntry() : Param::ParamNode
• findEntry_() : TOPPBase
• findEntryRecursive() : Param::ParamNode
• finder_ : AhoCorasickAmbiguous
• findExecutable() : File
• findFirst() : Param
• findFixedAndTermResidues_() : MRMDecoy
• findFixedResidues() : MRMDecoy
• findFixedResidues_() : MRMDecoy
• findHighestInWindow() : MSSpectrum
• findHit() : ProteinIdentification
• findIndexListOffset() : IndexedMzMLDecoder
• findIsotope_() : FeatureFinderAlgorithmPicked
• findLargestPeak() : MRMTransitionGroupPicker
• findLocalExtrema() : ElutionPeakDetection
• findLocalFeatures_() : FeatureFindingMetabo
• findMatches() : ModificationDefinitionsSet
• findMatchingPeaks_() : TwoDOptimization
• findMaxByIntPeak() : MassTrace
• findMaxima() : PeakPickerMaxima
• findMinimalProteinList() : PSProteinInference
• findModificationIndex() : ModificationsDB
• findNearest() : MSChromatogram , MSSpectrum , MZTrafoModel
• findNearestNeighbour_() : GridBasedClustering< Metric >
• findNearestPeak_() : Plot2DCanvas
• findNext() : AhoCorasickAmbiguous , Param
• findNode() : Param::ParamNode
• findOverlappingFeatures_() : FeatureFinderAlgorithmMetaboIdent
• findParentOf() : Param::ParamNode
• findPeakAtPosition_() : Plot1DCanvas
• findPeptide() : TransitionHelper
• findPeptideEntry_() : ProteinResolver
• findPosAtPeakHeightPercent_() : PeakIntegrator
• findPythonScript_() : SwathTabWidget
• findR() : RWrapper
• findReferenceChannel_() : IsobaricNormalizer
• findRelevantFilePaths_() : QuantitativeExperimentalDesign
• findScoreType() : IdentificationData , IDScoreSwitcherAlgorithm
• findScript() : RWrapper
• findSearchParameters_() : MzIdentMLDOMHandler
• findSiblingTOPPExecutable() : File
• findStream_() : LogStream
• findTopUniqueHits_() : XFDRAlgorithm
• findWidestPeakIndices() : MRMTransitionGroupPicker
• findWinner_() : PeakIntensityPredictor
• FineIsotopePatternGenerator() : FineIsotopePatternGenerator
• fingerid : SiriusAdapterAlgorithm
• Fingerid() : SiriusAdapterAlgorithm::Fingerid
• finishAdding_() : BaseVisualizerGUI , Plot1DCanvas , Plot2DCanvas , Plot3DCanvas , PlotCanvas
• finishContextMenu_() : Plot2DCanvas
• finished_ : TOPPASVertex
• finishHoveringEdge() : TOPPASScene , TOPPASVertex
• finishTOPPToolExecution() : TOPPViewBase
• first : ProbablePhosphoSites , TransformationModel::DataPoint
• first_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >
• first_column_ : FuzzyStringComparator
• first_name_ : ContactPerson
• first_row_ : NeedlemanWunsch
• first_run_inference_ : MzTab::CMMzTabStream , MzTab::IDMzTabStream
• FIRST_STABILITY_REGION : Instrument
• firstExec() : TOPPASIOMappingDialog
• firstname_ : ContactPersonVisualizer
• firstToUpper() : String , StringUtils
• fit() : EGHTraceFitter , GaussTraceFitter , GammaDistributionFitter , GaussFitter , GumbelDistributionFitter , PosteriorErrorProbabilityModel , TraceFitter
• fit1d() : BiGaussFitter1D , EGHFitter1D , EmgFitter1D , ExtendedIsotopeFitter1D , Fitter1D , GaussFitter1D , IsotopeFitter1D
• fit_data_ : MapAlignmentAlgorithmKD
• fit_EMG_ : PeakIntegrator
• fitAndValidateModel_() : ElutionModelFitter
• fitCalibration() : AbsoluteQuantitation
• fitElutionModels() : ElutionModelFitter
• fitEMGPeakModel() : EmgGradientDescent
• fitGumbelGauss() : PosteriorErrorProbabilityModel
• fitLOWESS() : MapAlignmentAlgorithmKD
• fitModel() : TransformationDescription
• fitOffset_() : MaxLikeliFitter1D
• fitPeakShape_() : PeakPickerCWT
• fitRT_() : EmgScoring , FeatureFinderAlgorithmMRM
• Fitter1D() : Fitter1D
• fitter_emg1D_params_ : EmgScoring
• fitWeighted() : GumbelDistributionFitter , GumbelMaxLikelihoodFitter
• FIVE_PRIME : Ribonucleotide
• five_prime_ : NASequence
• five_prime_gain_ : DigestionEnzymeRNA , RNaseDigestion
• FivePrime : NASequence
• FIXED : LPWrapper
• fixed_mod : MzIdentMLDOMHandler::ModificationParam , MzTabMetaData
• fixed_modification_ : ModificationDefinition
• fixed_modifications : ProteinIdentification::SearchParameters
• fixed_modifications_ : PepXMLFile , PepXMLFileMascot , PrecursorIonSelectionPreprocessing
• fixed_mods : DBSearchParam
• fixed_mods_ : ModificationDefinitionsSet , MzTab::CMMzTabStream , MzTab::IDMzTabStream , PrecursorIonSelectionPreprocessing
• fixedModNames_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• fixRange() : Plot1DGoToDialog , Plot2DGoToDialog
• Flag : FeatureFinderDefs
• flag : MapAlignmentAlgorithmSpectrumAlignment::Compare
• FLAG : ParameterInformation
• flag : QcMLFile::QualityParameter , SiriusAdapterAlgorithm::ParameterSection
• flag_or_filter_ : MRMFeatureFilter
• flags : LayerData
• Flags : LayerData
• flags_ : Annotation1DTextItem , FeatureFinder
• FlagSet() : FlagSet< ENUM >
• flattenAndBinSpectra_() : TOPPGNPSExport
• flipLayer() : Plot1DCanvas
• flipped : LayerData
• flipped_y_axis_ : Plot1DWidget
• flippedLayersExist() : Plot1DCanvas
• FLOAT : ListEditor
• float_data_arrays_ : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
• FloatDataArray : MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
• FloatDataArrays : FeatureFinderAlgorithmMRM , FeatureFinderAlgorithmPicked , MSChromatogram , MSSpectrum , ProteinIdentification::ProteinGroup
• floatfield() : BK_PrecPolicy< T >
• FLOATINDICES : PeakPickerMRM
• floats_32 : MzMLHandlerHelper::BinaryData
• floats_64 : MzMLHandlerHelper::BinaryData
• FLOWINJECTIONANALYSIS : IonSource
• flush() : IChromatogramsWriter , ISpectraWriter , LogStream , MSDataSqlConsumer
• flush_after_ : MSDataSqlConsumer
• flux_ : HPLC
• fmz : SiriusMSFile::CompoundInfo
• FOCALPLANEARRAY : IonDetector
• FOCALPLANECOLLECTOR : IonDetector
• focusByTab() : TOPPASBase
• focusInEvent() : OpenMSLineEdit
• focusOutEvent() : OpenMSLineEdit , Plot3DOpenGLCanvas , PlotCanvas
• followRedirect() : MascotRemoteQuery
• followUpScan : IsobaricChannelExtractor::PuritySate_
• followUpValid() : IsobaricChannelExtractor::PuritySate_
• force_constraints_ : FeatureDistance
• force_default_mods_ : XTandemInfile
• force_invalid_mods_ : TransitionTSVFile
• force_maxquant_compatibility_ : PeakFileOptions
• force_tpp_compatibility_ : PeakFileOptions
• form_version_ : MascotInfile
• format : MzTabMSRunMetaData
• format_ : SaveImageDialog
• FORMAT_CONVERSION : DataProcessing
• FORMAT_GLPK : LPWrapper
• FORMAT_LP : LPWrapper
• FORMAT_MPS : LPWrapper
• formula : AccurateMassSearchEngine::MappingEntry_ , FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound , IdentifiedCompound , SiriusMSFile::CompoundInfo , SiriusMzTabWriter::SiriusAdapterHit
• formula_ : Adduct , EmpiricalFormula , Residue , ResidueModification , Ribonucleotide
• formula_rank : CsiFingerIdMzTabWriter::CsiAdapterHit
• forward_ : HiddenMarkovModel
• forwardDump() : HiddenMarkovModel
• forwardTOPPOutput() : TOPPASToolVertex
• found_adduct_ : AccurateMassSearchResult
• found_precursor_charge_ : SpectralMatch
• found_precursor_mass_ : SpectralMatch
• FoundProteinFunctor() : PeptideIndexing::FoundProteinFunctor
• FOURIERTRANSFORM : MassAnalyzer
• FOURPLEX : ItraqConstants
• fraction : ExperimentalDesign::MSFileSectionEntry
• fraction_ : MSstatsFile::MSstatsLine_ , MSstatsFile::MSstatsTMTLine_
• fraction_counter_ : PrecursorIonSelection
• fraction_group : ExperimentalDesign::MSFileSectionEntry
• fraction_identifier_ : ExperimentalSettings , ExperimentalSettingsVisualizer
• frag_annotations : OPXLDataStructs::CrossLinkSpectrumMatch
• frag_charge_ : MSstatsFile::MSstatsLine_
• fragment_annotations : SimpleSearchEngineAlgorithm::AnnotatedHit_
• fragment_annotations_ : PeptideHit
• fragment_charge : TransitionTSVFile::TSVTransition , LightTransition
• fragment_ion_ : MSstatsFile::MSstatsLine_
• fragment_ion_codes_ : NucleicAcidSearchEngine
• fragment_lower_mz_ : XTandemInfile
• fragment_mass_error_unit_ : XTandemInfile
• fragment_mass_tolerance : DBSearchParam , ProteinIdentification::SearchParameters
• fragment_mass_tolerance_ : AScore , CompNovoIdentificationBase , CompNovoIonScoringBase , OpenPepXLAlgorithm , OpenPepXLLFAlgorithm , SimpleSearchEngineAlgorithm , XTandemInfile
• fragment_mass_tolerance_ppm : ProteinIdentification::SearchParameters
• fragment_mass_tolerance_unit_ : SimpleSearchEngineAlgorithm
• fragment_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• fragment_mass_tolerance_xlinks_ : OpenPepXLAlgorithm , OpenPepXLLFAlgorithm
• fragment_mass_type_ : XTandemInfile
• fragment_modification : TransitionTSVFile::TSVTransition
• fragment_mz_error_ : MetaboliteSpectralMatching
• fragment_mzdelta : TransitionTSVFile::TSVTransition
• fragment_nr : TransitionTSVFile::TSVTransition
• fragment_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
• fragment_tolerance_ppm : DBSearchParam
• fragment_tolerance_ppm_ : AScore
• fragment_type : TransitionTSVFile::TSVTransition
• fragment_window_ : SpectraIDViewTab
• FragmentAnnotationDetail_() : RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_
• fragmentAnnotationDetailsToPHFA() : RNPxlFragmentAnnotationHelper
• fragmentation_method : MzTabMSRunMetaData
• FragmentationType : ProtonDistributionModel
• fragmenterror_statistics_ : SpectrumAnnotator
• FragmentMassError() : FragmentMassError
• FragmentSeqMap : MRMAssay
• frame_size_ : SavitzkyGolayFilter
• freq_ : IonDetectorVisualizer
• FRINGING_FIELD : Instrument
• from_ : TOPPASEdge
• from_max_to_left_ : IsotopeWaveletTransform< PeakType >
• from_max_to_right_ : IsotopeWaveletTransform< PeakType >
• fromCellString() : MzTabBoolean , MzTabDouble , MzTabDoubleList , MzTabInteger , MzTabIntegerList , MzTabModification , MzTabModificationList , MzTabParameter , MzTabParameterList , MzTabSpectraRef , MzTabString , MzTabStringList
• fromConsensusMap() : ExperimentalDesign
• fromFeatureMap() : ExperimentalDesign
• fromIdentifications() : ExperimentalDesign
• fromLocalFile() : TOPPASResource
• fromNative_() : StringManager
• fromNativeID() : OSWData
• fromQStringList() : StringListUtils
• fromString() : AASequence , DataFilters::DataFilter , DateTime , MultiGradient , NASequence
• front() : ConstRefVector< ContainerT >
• front_boxes_ : IsotopeWaveletTransform< PeakType >
• fulfilled_ : SemanticValidator
• Full : NASequence , Residue
• full_id_ : ResidueModification
• full_meta_ : MSDataSqlConsumer
• full_name : MzTabCVMetaData
• full_name_ : ResidueModification
• fullDimensionName() : Peak2D
• fullDimensionNameMZ() : Peak2D
• fullDimensionNameRT() : Peak2D
• fullDimensionUnit() : Peak2D
• fullDimensionUnitMZ() : Peak2D
• fullDimensionUnitRT() : Peak2D
• fullname : CV
• FullPeptideName : TransitionTSVFile::TSVTransition
• FullSwathFileConsumer() : FullSwathFileConsumer
• function_ : BaseException , GlobalExceptionHandler
• FunctionType : Factory< FactoryProduct >
• Functor() : GumbelMaxLikelihoodFitter::Functor< _Scalar, NX, NY >
• FuzzyACPattern : AhoCorasickAmbiguous
• FuzzyStringComparator() : FuzzyStringComparator
• FWHM() : FWHM , MassAnalyzer
• fwhm_ : MassTrace
• fwhm_bound_ : PeakPickerCWT
• fwhm_end_idx_ : MassTrace
• fwhm_mz_avg : MassTrace
• fwhm_start_idx_ : MassTrace
• fwhm_threshold_ : TargetedSpectraExtractor
• fwhm_weight_ : TargetedSpectraExtractor