BALL: Class Members

Here is a list of all class members with links to the classes they belong to:

- p -

P : BALL::Element , BALL::Rotamer
p : BALL::TLine3< T > , BALL::TPlane3< T > , BALL::TCircle3< T > , BALL::TSphere3< T > , BALL::TriangulatedSphere::Face
p_ : BALL::QSAR::LibsvmModel
P_ : BALL::RingPerceptionProcessor
p_i_ : BALL::ConjugateGradientMinimizer
p_t_ : BALL::ConjugateGradientMinimizer
Pa : BALL::Element
paintEngine() : BALL::VIEW::GLOffscreenTarget
paintEvent() : BALL::VIEW::Scene , BALL::VIEW::SDWidget , BALL::VIEW::TextEditorWidget::LineNumbers , BALL::VIEW::GLRenderWindow , BALL::VIEW::ColorButton
paintGL() : BALL::VIEW::Scene
Pair6_12InteractionEnergyProcessor() : BALL::Pair6_12InteractionEnergyProcessor
Pair6_12RDFIntegrator() : BALL::Pair6_12RDFIntegrator
pair_charges_ : BALL::GeneralizedBornModel
pair_distances_ : BALL::GeneralizedBornModel
pair_items : BALL::CIFFile::SaveFrame
pair_list_ : BALL::GeneralizedBornModel
PairExpInteractionEnergyProcessor() : BALL::PairExpInteractionEnergyProcessor
PairExpRDFIntegrator() : BALL::PairExpRDFIntegrator
PairVector : BALL::ForceField , BALL::AtomBijection , BALL::UCK
PALLADIUM : BALL::Element
par1 : BALL::QSAR::Kernel
par2 : BALL::QSAR::Kernel
param : BALL::QSAR::LibsvmModel::svm_model
parameterDefaults : BALL::QSAR::RegistryEntry
parameterNames : BALL::QSAR::RegistryEntry
Parameters() : BALL::Parameters
parameters_ : BALL::ForceField , BALL::MMFF94OutOfPlaneBend , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::MMFF94Torsion , BALL::ShiftModel , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModule , BALL::QSAR::LibsvmModel , BALL::ClaverieParameter
parameters_by_row_ : BALL::MMFF94StretchBendParameters
parameters_initialized_ : BALL::AmberFF , BALL::CharmmFF , BALL::MMFF94
ParameterSection() : BALL::ParameterSection
parent : BALL::HashGridBox3< Item > , BALL::GAFFCESParser::CESPredicate , BALL::AssignBondOrderProcessor::Solution_
parent_ : BALL::Composite , BALL::NMRStarFile::NMRAtomDataSet , BALL::ResourceEntry , BALL::ConnectedToPredicate::CTPNode , BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::VIEW::AtomOverview , BALL::VIEW::BondProperties , BALL::VIEW::PubChemDialogPrivate::DownloadHelper , BALL::VIEW::ConnectionObject
PARENT_DIRECTORY : BALL::FileSystem
parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
parents_ : BALL::RingPerceptionProcessor
parity : BALL::MOLFile::AtomStruct
pars_ : BALL::Bruker1DFile
parse() : BALL::ExpressionParser , BALL::GAFFCESParser , BALL::SmartsParser , BALL::SmilesParser
parse_() : BALL::ConnectedToPredicate , BALL::BindingPocketProcessor
PARSE_INI_FILE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
PARSE_PARTIAL_CHARGES : BALL::PDBFile::Option , BALL::PDBFile::Default
parse_partial_charges_ : BALL::PDBFile
parseAtoms_() : BALL::FragmentDB
parseAtomtypeTableFile_() : BALL::GAFFTypeProcessor
parseBonds_() : BALL::FragmentDB
parseColumnFormat() : BALL::LineBasedFile
parseDataFile_() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
parseDelete_() : BALL::FragmentDB
ParsedFunction() : BALL::ParsedFunction< arg >
ParsedFunctionDialog() : BALL::VIEW::ParsedFunctionDialog
ParseError() : BALL::Exception::ParseError
parseItemRecursive_() : BALL::VIEW::PubChemDialog
parseLine() : BALL::PDBFile
parseLine_() : BALL::VIEW::PyWidget
parseProperties_() : BALL::FragmentDB
parser_ : BALL::GAFFCESParser::CESPredicate
parseRecordANISOU() : BALL::PDBFile
parseRecordATOM() : BALL::PDBFile
parseRecordAUTHOR() : BALL::PDBFile
parseRecordCAVEAT() : BALL::PDBFile
parseRecordCISPEP() : BALL::PDBFile
parseRecordCOMPND() : BALL::PDBFile
parseRecordCONECT() : BALL::PDBFile
parseRecordCRYST1() : BALL::PDBFile
parseRecordDBREF() : BALL::PDBFile
parseRecordEND() : BALL::PDBFile
parseRecordENDMDL() : BALL::PDBFile
parseRecordEXPDTA() : BALL::PDBFile
parseRecordFORMUL() : BALL::PDBFile
parseRecordFTNOTE() : BALL::PDBFile
parseRecordHEADER() : BALL::PDBFile
parseRecordHELIX() : BALL::PDBFile
parseRecordHET() : BALL::PDBFile
parseRecordHETATM() : BALL::PDBFile
parseRecordHETNAM() : BALL::PDBFile
parseRecordHETSYN() : BALL::PDBFile
parseRecordHYDBND() : BALL::PDBFile
parseRecordJRNL() : BALL::PDBFile
parseRecordKEYWDS() : BALL::PDBFile
parseRecordLINK() : BALL::PDBFile
parseRecordMASTER() : BALL::PDBFile
parseRecordMODEL() : BALL::PDBFile
parseRecordMODRES() : BALL::PDBFile
parseRecordMTRIX1() : BALL::PDBFile
parseRecordMTRIX2() : BALL::PDBFile
parseRecordMTRIX3() : BALL::PDBFile
parseRecordOBSLTE() : BALL::PDBFile
parseRecordORIGX1() : BALL::PDBFile
parseRecordORIGX2() : BALL::PDBFile
parseRecordORIGX3() : BALL::PDBFile
parseRecordREMARK() : BALL::PDBFile
parseRecordREVDAT() : BALL::PDBFile
parseRecordSCALE1() : BALL::PDBFile
parseRecordSCALE2() : BALL::PDBFile
parseRecordSCALE3() : BALL::PDBFile
parseRecordSEQADV() : BALL::PDBFile
parseRecordSEQRES() : BALL::PDBFile
parseRecordSHEET() : BALL::PDBFile
parseRecordSIGATM() : BALL::PDBFile
parseRecordSIGUIJ() : BALL::PDBFile
parseRecordSITE() : BALL::PDBFile
parseRecordSLTBRG() : BALL::PDBFile
parseRecordSOURCE() : BALL::PDBFile
parseRecordSPRSDE() : BALL::PDBFile
parseRecordSSBOND() : BALL::PDBFile
parseRecordTER() : BALL::PDBFile
parseRecordTITLE() : BALL::PDBFile
parseRecordTURN() : BALL::PDBFile
parseRecordTVECT() : BALL::PDBFile
parseRename_() : BALL::FragmentDB
parsf1_ : BALL::Bruker2DFile
parsf2_ : BALL::Bruker2DFile
partial_charge : BALL::PDB::RecordATOM
PartialChargeBase() : BALL::PartialChargeBase
PartialChargeProcessor() : BALL::PartialChargeProcessor
partitionFreeSingularEdge() : BALL::SESTriangulator
partitionInputData() : BALL::ML::MLData , BALL::QSAR::QSARData
partitionNonFreeSingularEdge() : BALL::SESTriangulator
partitionOfCircle() : BALL::SESTriangulator
partitionSingularEdge() : BALL::SESTriangulator
partitionSingularEdges() : BALL::SESTriangulator
partner1Chosen() : BALL::VIEW::DockDialog
partner2Chosen() : BALL::VIEW::DockDialog
partner_atom : BALL::PDB::RecordSLTBRG
partner_id : BALL::Kekuliser::AtomInfo
partner_residue : BALL::PDB::RecordSSBOND
partner_type_to_htype_ : BALL::MMFF94AtomTyper
past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
PASTE : BALL::VIEW::MolecularControl
paste() : BALL::VIEW::MolecularControl , BALL::VIEW::PyWidget
paste_action_ : BALL::VIEW::MolecularControl
paste_id_ : BALL::VIEW::MolecularControl
pasteAllowedFor_() : BALL::VIEW::MolecularControl
path() : BALL::FileSystem
Path() : BALL::Path
path_ : BALL::Path , BALL::SimpleDownloaderHelper::HelperThread
path_array_ : BALL::Path
path_array_valid_ : BALL::Path
PATH_SEPARATOR : BALL::FileSystem
PathStrings : BALL::PyInterpreter
pattern_ : BALL::RegularExpression
pause() : BALL::DockingAlgorithm
pause_ : BALL::DockingAlgorithm
pauseClicked() : BALL::VIEW::DockProgressDialog
pauseRendering() : BALL::VIEW::RenderSetup
Pb : BALL::Element
pbcis_ : BALL::MMFF94ESParameters
pbuf_ : BALL::LogStreamBuf
pcd_ : BALL::VIEW::PubChemDialog
pcm_ : BALL::NonpolarSolvation
PCMCavFreeEnergyProcessor() : BALL::PCMCavFreeEnergyProcessor
pcount : BALL::TriangulatedSphere::Face
PCRModel() : BALL::QSAR::PCRModel
Pd : BALL::Element
PDB_atom_map_ : BALL::PDBFile
PDB_FILE : BALL::VIEW::MolecularFileDialog
pdb_id : BALL::PDB::AdditionalAtomInfo
PDBAtom() : BALL::PDBAtom
PDBAtomIteratorTraits() : BALL::PDBAtomIteratorTraits
PDBAtomMap : BALL::PDBFile
pdbDownloadChecked() : BALL::VIEW::DownloadElectronDensity
PDBFile() : BALL::PDBFile
PDBInfo() : BALL::PDBInfo
PDBInfoEditorWidget : BALL::VIEW::PDBInfoEditorWidget::EditorPDBInfoDialog , BALL::VIEW::PDBInfoEditorWidget
PDBRecords() : BALL::PDBRecords
Peak() : BALL::Peak< PositionType >
Peak_() : BALL::GeometricFit::Peak_
peak_list_ : BALL::Experiment< PeakListType >
peak_set_ : BALL::GeometricFit
PeakList() : BALL::PeakList< PT >
peaklist_ : BALL::CreateSpectrumProcessor
peaks_ : BALL::ShiftModel1D , BALL::ShiftModel2D
PeakType : BALL::Experiment< PeakListType > , BALL::PeakList< PT > , BALL::Spectrum< DataT, PeakT, PositionT >
peeling_order_ : BALL::RingAnalyser
peelNextRing_() : BALL::RingAnalyser
peelRings_() : BALL::RingAnalyser
penalties_ : BALL::AssignBondOrderProcessor
PENALTY_MOBILE : BALL::GeometricFit::Option , BALL::GeometricFit::Default
PENALTY_STATIC : BALL::GeometricFit::Option , BALL::GeometricFit::Default
pentakisDodecaeder() : BALL::TriangulatedSphere
peptide_() : BALL::Peptides::PeptideBuilder
PeptideBuilder() : BALL::Peptides::PeptideBuilder
PeptideCapProcessor() : BALL::PeptideCapProcessor
PeptideDialog() : BALL::VIEW::PeptideDialog
performAStarStep_() : BALL::AssignBondOrderProcessor
performBranchAndBound_() : BALL::AssignBondOrderProcessor
performGreedy_() : BALL::AssignBondOrderProcessor
performRequiredUpdates_() : BALL::ForceField
Period : BALL::Element
period_ : BALL::Element
periodic_boundary : BALL::ForceField
PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
PeriodicBoundary() : BALL::PeriodicBoundary
periodicBoundaryClicked() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::FFConfigurationDialog
permuteComponentSigns_() : BALL::PolarSolvation
PersistenceManager() : BALL::PersistenceManager
PersistentObject() : BALL::PersistentObject
persistentRead() : BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::PDBInfo , BALL::PDBRecords , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T > , BALL::CrystalInfo
persistentWrite() : BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::PDBInfo , BALL::PDBRecords , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T > , BALL::CrystalInfo
PERSPECTIVE : BALL::VIEW::Camera
phase : BALL::AmberTorsion::SingleAmberTorsion , BALL::CharmmTorsion::SingleCharmmTorsion , BALL::CosineTorsion::SingleValues , BALL::QuadraticImproperTorsion::Values , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
phe_pressed() : BALL::VIEW::PeptideDialog
phi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
phi_grid : BALL::FDPB
PHI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
PHI_MIN : BALL::GeometricFit::Option , BALL::GeometricFit::Default
phis_ : BALL::MMFF94ESParameters
PHOSPHORUS : BALL::Element
PI : BALL::Constant
pick_select_ : BALL::VIEW::Scene
PICKING__MODE : BALL::VIEW::Scene
picking_action_ : BALL::VIEW::Scene
picking_mode_ : BALL::VIEW::GLRenderer
pickingMode_() : BALL::VIEW::Scene
pickObjects() : BALL::VIEW::RenderSetup
pickObjects1() : BALL::VIEW::GLRenderer
pickObjects2() : BALL::VIEW::GLRenderer
pickParent_() : BALL::VIEW::Scene
PIECEWISE_POLYNOMIAL : BALL::RDFSection
PiecewiseFunction() : BALL::PiecewiseFunction
PiecewisePolynomial() : BALL::PiecewisePolynomial
PierottiCavFreeEnergyProcessor() : BALL::PierottiCavFreeEnergyProcessor
pilp : BALL::MMFF94AtomType
pitch : BALL::VIEW::FrameBufferFormat
pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
pixelFormat : BALL::VIEW::FrameBufferFormat
PixelFormat() : BALL::VIEW::PixelFormat
pixmap_ : BALL::VIEW::CanvasWidget::PixmapItem
PixmapItem() : BALL::VIEW::CanvasWidget::PixmapItem
placeSubstituent_() : BALL::SDGenerator
PLANAR_FRAMEBUFFER : BALL::VIEW::PixelFormat
planarAtom_() : BALL::GAFFTypeProcessor
planBackward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
planCalculated_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
PLANCK : BALL::Constant
PLANE : BALL::VIEW::GridVisualisation
plane_ : BALL::VIEW::SetClippingPlane
plane_to_item_ : BALL::VIEW::GeometricControl
PlaneMap : BALL::MMFF94PlaneParameters
planForward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
PLATINUM : BALL::Element
plot() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget , BALL::VIEW::SDWidget
PLSModel() : BALL::QSAR::PLSModel
pluginChanged() : BALL::VIEW::PluginDialog
PluginDialog() : BALL::VIEW::PluginDialog
PluginManager() : BALL::PluginManager
PluginModel() : BALL::VIEW::PluginModel
pluginsLoaded() : BALL::VIEW::PluginModel
PLUMBUM : BALL::Element
plus_ : BALL::DSN6File
PLUTONIUM : BALL::Element
Pm : BALL::Element
pm_ : BALL::Client , BALL::ObjectCreator
Po : BALL::Element
Point() : BALL::VIEW::Point
point : BALL::RSComputer::ProbePosition , BALL::SESSingularityCleaner::ProbeIntersection
point_ : BALL::TBox3< T > , BALL::SASVertex , BALL::SESVertex , BALL::TrianglePoint , BALL::SESTriangulator , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
point_ptr_ : BALL::VIEW::Sphere
pointer : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::VIEW::CompositeManager
pointer_list_ : BALL::PersistenceManager
pointer_map_ : BALL::PersistenceManager
PointerList : BALL::PersistenceManager
PointerMap : BALL::PersistenceManager
PointerType : BALL::HashMap< Key, T > , BALL::HashSet< Key > , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::PyColorRGBAVector , BALL::PyCompositeList , BALL::PyDatasetVector , BALL::PyIndexList
PointIterator : BALL::TriangulatedSurface
points : BALL::VIEW::GridVisualisation
points_ : BALL::TriangulatedSurface
PointType : BALL::TContourLine< T > , BALL::TContourSurface< T >
PointVector : BALL::RMSDMinimizer
POLAK_RIBIERE : BALL::ConjugateGradientMinimizer
POLAR : BALL::SLICKScore::Option , BALL::SLICKEnergy::Option , BALL::SLICKEnergy::Default , BALL::SLICKScore::Default , BALL::FresnoTypes
POLAR_AVG : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
POLAR_CHARGE_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
polar_color_ : BALL::VIEW::ResidueTypeColorProcessor
POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_GB : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_METHOD : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
POLAR_RADIUS_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
PolarSolvation() : BALL::PolarSolvation
PolarVdWSurface() : BALL::PolarVdWSurface
pollPubChem_() : BALL::PubChemDownloader
POLONIUM : BALL::Element
polymer_class : BALL::NMRStarFile::MonomericPolymer
pool_ : BALL::SmartsMatcher
pop() : BALL::ResourceEntry::IteratorTraits_
pop_back() : BALL::PDBRecords
popRepresentationToUpdate() : BALL::VIEW::RepresentationManager
PopUpID : BALL::VIEW::MainControl
port_ : BALL::Client , BALL::TCPServer , BALL::VIEW::ServerPreferences , BALL::VIEW::ServerWidget , BALL::VIEW::ServerWidget::BALLViewServer
pos_ : BALL::SmartsMatcher::RecStruct_
pos_C : BALL::HBondProcessor::ResidueData
pos_H : BALL::HBondProcessor::ResidueData
pos_N : BALL::HBondProcessor::ResidueData
pos_O : BALL::HBondProcessor::ResidueData
posbridges_ : BALL::SecondaryStructureProcessor
position : BALL::MOLFile::AtomStruct , BALL::BindingPocketProcessor::Sphere_
Position : BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::Peak< PositionType > , BALL::PeakList< PT > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess >
position : BALL::MOL2File::AtomStruct
position_ : BALL::Composite::CompositeIteratorTraits , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashSet< Key >::IteratorTraits , BALL::INIFile::IteratorTraits_ , BALL::ResourceEntry::IteratorTraits_ , BALL::Atom , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::Peak< PositionType > , BALL::VIEW::LightSource , BALL::Atom::BondIteratorTraits , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::HashGrid3< Item >::BoxIteratorTraits
position_data_size : BALL::TRRFile::TRRHeader
POSITION_VALUE_NA : BALL::NMRStarFile
POSITIONAL : BALL::VIEW::LightSource
PositionColorProcessor() : BALL::VIEW::PositionColorProcessor
PositionType : BALL::Spectrum< DataT, PeakT, PositionT >
positionTypeChanged() : BALL::VIEW::LightSettings
PositivePolarVdWSurface() : BALL::PositivePolarVdWSurface
PositiveVdWSurface() : BALL::PositiveVdWSurface
possible_buried_polar_interactions_ : BALL::BuriedPolar
possible_hydrogen_bonds_ : BALL::HydrogenBond
possible_interactions_ : BALL::AromaticRingStacking , BALL::CHPI
possible_lipophilic_interactions_ : BALL::Lipophilic
possible_metal_interactions_ : BALL::ChemScoreMetal
Postcondition() : BALL::Exception::Postcondition
postProcessAtomTypes_() : BALL::GAFFTypeProcessor
postprocessHelices_() : BALL::PDBFile
postprocessing_() : BALL::EFShiftProcessor , BALL::EmpiricalHSShiftProcessor , BALL::HaighMallionShiftProcessor , BALL::RandomCoilShiftProcessor , BALL::HBondShiftProcessor
postprocessRandomCoils_() : BALL::PDBFile
postprocessSheetsTurns_() : BALL::PDBFile
postprocessSSBonds_() : BALL::PDBFile
POTASSIUM : BALL::Element
Potential1210() : BALL::Potential1210
potential_energy_ : BALL::SnapShot
potential_grid_ : BALL::VIEW::FieldLineCreator
pov_nr_ : BALL::VIEW::Scene
POVColorRGBA() : BALL::VIEW::POVRenderer
POVFinish() : BALL::VIEW::POVRenderer
POVRenderer() : BALL::VIEW::POVRenderer
POVVector3() : BALL::VIEW::POVRenderer
PQ_Entry_ : BALL::AssignBondOrderProcessor , BALL::AssignBondOrderProcessor::PQ_Entry_
Pr : BALL::Element
PRASEODYMIUM : BALL::Element
pre_translation_a_ : BALL::GeometricFit
pre_translation_b_ : BALL::GeometricFit
preassignPenaltyClasses_() : BALL::AssignBondOrderProcessor
PreciseTime() : BALL::PreciseTime
precision_ : BALL::TRRFile
precisionBoxChanged() : BALL::VIEW::DisplayProperties
precisionSliderChanged() : BALL::VIEW::DisplayProperties
precomputeAtomProperties_() : BALL::GAFFTypeProcessor
precomputeBondLengthPenalties_() : BALL::AssignBondOrderProcessor
precomputeBondProperties_() : BALL::GAFFTypeProcessor
preComputeBonds_() : BALL::HBondProcessor
Precondition() : BALL::Exception::Precondition
predecessor() : BALL::RingAnalyser::Ring
predicate : BALL::ExpressionParser::SyntaxTree
predicate_ : BALL::ExpressionTree , BALL::CompositeIteratorTraits , BALL::BaseFilterIterator< Predicate, IteratorBase >
predict() : BALL::QSAR::ALLModel , BALL::QSAR::FitModel , BALL::QSAR::GPModel , BALL::QSAR::KernelModel , BALL::QSAR::LinearModel , BALL::QSAR::LogitModel , BALL::QSAR::Model , BALL::QSAR::SNBModel , BALL::QSAR::NBModel , BALL::QSAR::LDAModel
PREDICTION_METHOD : BALL::HBondProcessor::Option , BALL::HBondProcessor::Default
PredictionConfiguration() : BALL::QSAR::PredictionConfiguration
predQualFetcher_ : BALL::QSAR::RegressionValidation
Preferences() : BALL::VIEW::Preferences
preferences_ : BALL::VIEW::DisplayProperties , BALL::VIEW::PyWidget
preferences_action_ : BALL::VIEW::MainControl
preferences_dialog_ : BALL::VIEW::MainControl
preferences_file_ : BALL::VIEW::MainControl
PreferencesEntry() : BALL::VIEW::PreferencesEntry
PreferencesObject() : BALL::PreferencesObject
prefix : BALL::LogStreamBuf::StreamStruct
prefix_ : BALL::VIEW::DownloadPDBFile , BALL::VIEW::DemoTutorialDialog , BALL::RuleEvaluator
prepare_() : BALL::SDGenerator
prepareBufferedRendering() : BALL::VIEW::BufferedRenderer
prepareGridTextures() : BALL::VIEW::RenderSetup , BALL::VIEW::Scene
prepareRendering() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::RenderTarget , BALL::VIEW::RenderWindow< taPixelDatatype >
prepareUpscaling() : BALL::VIEW::GLOffscreenTarget
prepend() : BALL::SecondaryStructure , BALL::Nucleotide , BALL::AtomContainer , BALL::Chain , BALL::System , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Chain , BALL::SecondaryStructure
prependChild() : BALL::Composite
preProcessing() : BALL::SolventAccessibleSurface , BALL::RSComputer , BALL::SESComputer , BALL::SESTriangulator
pres_size : BALL::TRRFile::TRRHeader
PRESSURE : BALL::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default
prev_shift_val_ : BALL::ShiftedLVMMMinimizer
preview_ : BALL::VIEW::Scene
previous_ : BALL::Composite
primitive_manager_ : BALL::VIEW::MainControl
PrincipalMomentOfInertia() : BALL::PrincipalMomentOfInertia
PrincipalMomentOfInertiaX() : BALL::PrincipalMomentOfInertiaX
PrincipalMomentOfInertiaY() : BALL::PrincipalMomentOfInertiaY
PrincipalMomentOfInertiaZ() : BALL::PrincipalMomentOfInertiaZ
print() : BALL::VIEW::PixelFormat
print_expected : BALL::QSAR::PredictionConfiguration
PRINT_TIMING : BALL::FDPB::Option , BALL::FDPB::Default
printAPS() : BALL::GAFFCESParser::APSMatcher
printCursorPosition_() : BALL::VIEW::PyWidget
printEffectors_() : BALL::EFShiftProcessor , BALL::HBondShiftProcessor , BALL::HaighMallionShiftProcessor
printEnergy() : BALL::EnergyMinimizer
printMatrix() : BALL::QSAR::QSARData , BALL::ML::MLData
printParameters_() : BALL::EmpiricalHSShiftProcessor , BALL::HBondShiftProcessor , BALL::EFShiftProcessor , BALL::HaighMallionShiftProcessor
printScene() : BALL::VIEW::Scene
printSelectionInfos() : BALL::VIEW::MainControl
printTargets_() : BALL::HBondShiftProcessor , BALL::EmpiricalHSShiftProcessor , BALL::HaighMallionShiftProcessor , BALL::EFShiftProcessor
printUCK() : BALL::UCK
pro_pressed() : BALL::VIEW::PeptideDialog
probA : BALL::QSAR::LibsvmModel::svm_model
probabilities_ : BALL::QSAR::NBModel
probB : BALL::QSAR::LibsvmModel::svm_model
probe_intersections_ : BALL::SESSingularityCleaner
PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
probe_positions_ : BALL::RSComputer
PROBE_RADIUS : BALL::UhligCavFreeEnergyProcessor::Option , BALL::NonpolarSolvation::Option , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::FDPB::Option , BALL::ReissCavFreeEnergyProcessor::Option , BALL::NumericalSAS::Option , BALL::NumericalSAS::Default , BALL::UhligCavFreeEnergyProcessor::Default , BALL::FDPB::Default , BALL::ReissCavFreeEnergyProcessor::Default , BALL::PCMCavFreeEnergyProcessor::Default , BALL::PCMCavFreeEnergyProcessor::Option , BALL::NonpolarSolvation::Default
probe_radius_ : BALL::NonpolarSolvation , BALL::SurfaceProcessor , BALL::ReducedSurface , BALL::VIEW::AddSurfaceModel
PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
probe_weight : BALL::BindingPocketProcessor::Sphere_
probeIntersection() : BALL::SESSingularityCleaner
probeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
ProbeStatus : BALL::RSComputer
proceed() : BALL::DockingAlgorithm
processEvent_() : BALL::VIEW::TestFramework
processEvents() : BALL::VIEW::MainControl
processing_message_queue_ : BALL::VIEW::ConnectionObject
processMoveModeMouseEvents_() : BALL::VIEW::Scene
processor_ : BALL::VIEW::AtomOverview , BALL::NonpolarSolvation
processRotateModeMouseEvents_() : BALL::VIEW::Scene
prod_ : BALL::DSN6File
Product() : BALL::Product< First, Second, DataType >
progress_ : BALL::VIEW::PubChemDialog
progress_bar_ : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
progress_dialog_ : BALL::VIEW::DockingController
project() : BALL::PairExpRDFIntegrator , BALL::Pair6_12RDFIntegrator
project_ : BALL::VIEW::ShowHelpMessage , BALL::VIEW::HelpViewer
project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
projection_mode_ : BALL::VIEW::Camera
ProjectionMode : BALL::VIEW::Camera
projectionModeChanged() : BALL::VIEW::RenderSetup , BALL::VIEW::Scene
projectionTransformationChanged() : BALL::VIEW::StageSettings
prolineActivated() : BALL::VIEW::PeptideDialog
prolineDeactivated() : BALL::VIEW::PeptideDialog
PROMETHIUM : BALL::Element
prop_ : BALL::DNAMutator
PropDeleteWidget() : BALL::VIEW::PropDeleteWidget
PropEditorWidget() : BALL::VIEW::PropEditorWidget
Properties : BALL::VIEW::Representation
properties_ : BALL::SmartsParser::SPAtom , BALL::Composite
properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
PropertiesForShift_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
Property : BALL::Protein , BALL::Chain , BALL::Atom , BALL::SmartsParser::SPAtom::Property , BALL::Fragment , BALL::Residue , BALL::SmartsParser::SPAtom::Property , BALL::PDBAtom , BALL::SmartsParser::SPAtom::Property , BALL::SDGenerator , BALL::Molecule , BALL::Nucleotide , BALL::SmartsParser::SPAtom::Property , BALL::NucleicAcid , BALL::Bond , BALL::AtomContainer
PROPERTY__3_PRIME : BALL::Nucleotide
PROPERTY__5_PRIME : BALL::Nucleotide
PROPERTY__ALWAYS_FRONT : BALL::VIEW::Representation
PROPERTY__AMINO_ACID : BALL::Residue
PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
PROPERTY__C_TERMINAL : BALL::Residue
PROPERTY__CYCLIC : BALL::Residue
PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
PROPERTY__HAS_SSBOND : BALL::Residue
PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
PROPERTY__HETATM : BALL::PDBAtom
PROPERTY__IS_COORDINATE_SYSTEM : BALL::VIEW::Representation
PROPERTY__N_TERMINAL : BALL::Residue
PROPERTY__NON_STANDARD : BALL::Residue
PROPERTY__NUCLEOTIDE : BALL::Nucleotide
PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
PROPERTY__RING_CURRENT_SHIFT : BALL::JohnsonBoveyShiftProcessor , BALL::HaighMallionShiftProcessor
PROPERTY__SHIFT : BALL::ShiftModule
PROPERTY__WATER : BALL::Residue
property_files_ : BALL::EmpiricalHSShiftProcessor
property_pairs_ : BALL::EmpiricalHSShiftProcessor
PropertyEditor() : BALL::VIEW::PropertyEditor
PropertyError() : BALL::QSAR::Exception::PropertyError
PropertyManager() : BALL::PropertyManager
PropertyType : BALL::SmartsParser::SPAtom
PROTACTINIUM : BALL::Element
Protein() : BALL::Protein
protein_ : BALL::VIEW::PeptideDialog
PROTEIN_A : BALL::GeometricFit
PROTEIN_B : BALL::GeometricFit
protein_clash_rad_ : BALL::BindingPocketProcessor
protein_grid_ : BALL::BindingPocketProcessor
ProteinIndex : BALL::GeometricFit
ProteinIteratorTraits() : BALL::ProteinIteratorTraits
proteinname_ : BALL::Peptides::PeptideBuilder
protomode() : BALL::VIEW::ExportGeometryDialog
proton_list_ : BALL::JohnsonBoveyShiftProcessor , BALL::AnisotropyShiftProcessor
PROTON_MASS : BALL::Constant
proxy_model_ : BALL::VIEW::ShortcutTableView
proxyEnabled() : BALL::VIEW::NetworkPreferences
proxyModeChanged() : BALL::VIEW::NetworkPreferences
PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default , BALL::Peptides::NameConverter::Option
pseudo_conventions_ : BALL::Peptides::NameConverter
pseudo_conversion_table_ : BALL::Peptides::NameConverter
psi_ : BALL::Peptides::AminoAcidDescriptor , BALL::GeometricFit::RotationAngles_ , BALL::ResidueRotamerSet
PSI_MAX : BALL::GeometricFit::Default , BALL::GeometricFit::Option
PSI_MIN : BALL::GeometricFit::Option , BALL::GeometricFit::Default
Pt : BALL::Element
PTE_() : BALL::PTE_
pte_ : BALL::VIEW::EditFunctions
PTE_() : BALL::PTE_
PTEDialog() : BALL::VIEW::PTEDialog
ptr_ : BALL::TContourSurface< T >::Cube
Pu : BALL::Element
PubChemDialog() : BALL::VIEW::PubChemDialog
PubChemDialogPrivate::DownloadHelper : BALL::VIEW::PubChemDialog
PubChemDownloader() : BALL::PubChemDownloader
pug_base_url_ : BALL::PubChemDownloader
PURE_DOUBLE_BOND : BALL::GAFFCESParser::APSMatcher
PURE_DOUBLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
PURE_SINGLE_BOND : BALL::GAFFCESParser::APSMatcher
PURE_SINGLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
push() : BALL::RingPerceptionProcessor::PathMessage_ , BALL::ResourceEntry::IteratorTraits_
push_back() : BALL::PDBRecords
pushbackNCS() : BALL::CrystalInfo
pushBackNormal() : BALL::TSurface< T >
pushBackTriangle() : BALL::TSurface< T >
pushBackVertex() : BALL::TSurface< T >
pushCFS_() : BALL::SDGenerator
pushConcaveEdge() : BALL::SESComputer
pushVertex() : BALL::SESComputer
put() : BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager
putbackLine() : BALL::QSAR::ConfigIO
pw_ : BALL::VIEW::PyWidget::MyTextEdit , BALL::VIEW::PyWidget::MyLineEdit
PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
pw_grid_ : BALL::BindingPocketProcessor
PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
PW_SQUARE_WELL : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
PyColorRGBAVector() : BALL::PyColorRGBAVector
PyCompositeList() : BALL::PyCompositeList
PyDatasetVector() : BALL::PyDatasetVector
PyIndexList() : BALL::PyIndexList
PyInterpreter() : BALL::PyInterpreter
python_format : BALL::VIEW::PythonHighlighter
python_keywords : BALL::VIEW::PythonHighlighter
python_line_ : BALL::VIEW::TestFramework
python_patterns : BALL::VIEW::PythonHighlighter
python_settings_ : BALL::VIEW::PyWidget
PythonHighlighter() : BALL::VIEW::PythonHighlighter
PythonSettings() : BALL::VIEW::PythonSettings
PythonValidator() : BALL::VIEW::PythonValidator
PyWidget() : BALL::VIEW::PyWidget