Here is a list of all class members with links to the classes they belong to:

- r -

• R : BALL::Constant
• r : BALL::FDPB::FastAtomStruct
• r0 : BALL::MMFF94StretchBend::Stretch , BALL::QuadraticBondStretch::Values , BALL::MMFF94StretchParameters::EmpiricalBondData
• r0_ : BALL::QuadraticBondStretch
• r0_normal : BALL::MMFF94StretchParameters::BondData
• r0_sbmb : BALL::MMFF94StretchParameters::BondData
• r1_ : BALL::ChemScoreMetal
• r1_offset_ : BALL::BuriedPolar , BALL::Lipophilic
• r2_ : BALL::ChemScoreMetal
• R2_ : BALL::QSAR::RegressionValidation
• r2_offset_ : BALL::BuriedPolar , BALL::Lipophilic
• r_direction_ : BALL::VIEW::LightSource
• R_ij_o_ : BALL::PairExpRDFIntegrator
• r_max_ : BALL::ReducedSurface
• r_min : BALL::CharmmEEF1::Values
• R_min_ : BALL::CharmmEEF1
• r_position_ : BALL::VIEW::LightSource
• Ra : BALL::Element
• RAD_PER_DEG : BALL::Constant
• RadialDistributionFunction() : BALL::RadialDistributionFunction
• radii : BALL::MMFF94StretchParameters
• radii_ : BALL::ElectrostaticPotentialCalculator
• RADIUM : BALL::Element
• radius : BALL::JohnsonBoveyShiftProcessor::Ring , BALL::SolventAtomDescriptor , BALL::BindingPocketProcessor::Sphere_ , BALL::TCircle3< T > , BALL::TSphere3< T >
• radius_ : BALL::Atom , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Tube , BALL::VIEW::TwoColoredTube , BALL::BindingPocketProcessor
• radius_a_ : BALL::GeometricFit
• radius_b_ : BALL::GeometricFit
• RADIUS_CARBON : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• radius_factor_ : BALL::VIEW::AddVanDerWaalsModel
• RADIUS_HYDROGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• RADIUS_NITROGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• radius_of_torus_ : BALL::RSEdge
• radius_offset_ : BALL::SurfaceProcessor
• RADIUS_OXYGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• radius_processor_ : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
• radius_rule_processor_ : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
• RADIUS_SULFUR : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• RadiusRuleProcessor() : BALL::RadiusRuleProcessor
• RADON : BALL::Element
• RANDOM : BALL::VIEW::DockingController
• RandomAccessFilterIterator() : BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess >
• RandomAccessIterator() : BALL::RandomAccessIterator< Container, DataType, Position, Traits >
• RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
• randomDouble() : BALL::RandomNumberGenerator
• RandomEvaluation() : BALL::RandomEvaluation
• randomGaussian() : BALL::RandomNumberGenerator
• randomInteger() : BALL::RandomNumberGenerator
• RandomNumberGenerator() : BALL::RandomNumberGenerator
• randomUniform() : BALL::RandomNumberGenerator
• Range : BALL::TAngle< T >
• range_ : BALL::PiecewiseFunction
• RANGE__SIGNED : BALL::TAngle< T >
• RANGE__UNLIMITED : BALL::TAngle< T >
• RANGE__UNSIGNED : BALL::TAngle< T >
• rank_ : BALL::MPISupport
• RANK_1 : BALL::ShiftedLVMMMinimizer
• RANK_2 : BALL::ShiftedLVMMMinimizer
• RATIO_OF_SHIFT_PARAMS : BALL::ShiftedLVMMMinimizer
• RaytraceableContourSurfaceDialog() : BALL::VIEW::RaytraceableContourSurfaceDialog
• RaytraceableGrid() : BALL::VIEW::RaytraceableGrid
• RaytraceableGridController() : BALL::VIEW::RaytraceableGridController
• Rb : BALL::Element
• rb_ : BALL::VIEW::Scene
• rbegin() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ConstReverseIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::Gradient
• rbeginBond() : BALL::Atom
• rbeginChildComposite() : BALL::Composite
• rbeginComposite() : BALL::Composite
• rdbuf() : BALL::LogStream
• rdf_ : BALL::RDFIntegrator , BALL::RDFSection
• RDF_FILENAME : BALL::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::Pair6_12InteractionEnergyProcessor::Default
• rdf_indices_ : BALL::RDFParameter
• rdf_integrator_ : BALL::Pair6_12InteractionEnergyProcessor
• rdf_list_ : BALL::RDFParameter
• rdf_parameter_ : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• RDFIntegrator() : BALL::RDFIntegrator
• RDFParameter() : BALL::RDFParameter
• RDFSection() : BALL::RDFSection
• Re : BALL::Element
• reacting_center_status : BALL::MOLFile::BondStruct
• reaction_component_number : BALL::MOLFile::AtomStruct
• reaction_component_type : BALL::MOLFile::AtomStruct
• reaction_field_energy_ : BALL::FDPB
• reactTo() : BALL::VIEW::PyWidget
• reactToKeyEvent_() : BALL::VIEW::EditableScene
• reactToMessages_() : BALL::VIEW::MolecularControl
• read() : BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::BitVector , BALL::Options , BALL::AntechamberFile , BALL::Bruker1DFile , BALL::Bruker2DFile , BALL::CCP4File , BALL::CIFFile , BALL::DCDFile , BALL::DSN6File , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile , BALL::MOL2File , BALL::MOLFile , BALL::NMRStarFile , BALL::PDBFile , BALL::SDFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::XYZFile , BALL::TVector3< T > , BALL::GAFFCESParser
• read_all_pdb_models_ : BALL::VIEW::MolecularFileDialog
• read_atoms_ : BALL::SDFile
• read_sd_descriptors : BALL::QSAR::InputConfiguration
• read_start_ : BALL::GAFFCESParser
• readACFile() : BALL::VIEW::MolecularFileDialog
• readAndInitBondAnglesFromFile_() : BALL::HybridisationProcessor
• readAtomicPolarizabilities_() : BALL::SimpleBase
• readAtomLine_() : BALL::MOLFile
• readAtomPenalties_() : BALL::AssignBondOrderProcessor
• readAtomSection_() : BALL::MOL2File
• readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
• readBinValueasFloat_() : BALL::CCP4File
• readBinValueasInt_() : BALL::CCP4File
• readBondLengthsFromFile_() : BALL::BuildBondsProcessor
• readBondLine_() : BALL::MOLFile
• readBondSection_() : BALL::MOL2File
• readClassInformationFromFile() : BALL::QSAR::ClassificationModel
• readCommentSection_() : BALL::MOL2File
• readConversionTable_() : BALL::Peptides::NameConverter
• readCountsLine_() : BALL::MOLFile
• readCSVFile() : BALL::ML::MLData , BALL::QSAR::QSARData
• readCTAB_() : BALL::MOLFile
• readDCDFile() : BALL::ConformationSet
• readDELIMITER_() : BALL::KCFFile
• readDescriptorInformation() : BALL::QSAR::Model
• readDescriptorInformationFromFile() : BALL::QSAR::Model , BALL::QSAR::RegressionModel
• readDockResult() : BALL::DockResult
• readEDGE_() : BALL::KCFFile
• readElectronAffinities_() : BALL::PartialChargeProcessor
• readEmpiricalParameters() : BALL::MMFF94StretchParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94ESParameters
• readENTRY_() : BALL::KCFFile
• readEntryInformation_() : BALL::NMRStarFile
• readFeatureSelectionConfiguration() : BALL::QSAR::ConfigIO
• readFiles() : BALL::VIEW::MolecularFileDialog
• readFirstRecord() : BALL::PDBFile
• readFloat_() : BALL::DCDFile
• readFromFile() : BALL::ML::MLData , BALL::SnapShotManager , BALL::QSAR::ALLModel , BALL::QSAR::ClassificationValidation , BALL::QSAR::KernelModel , BALL::QSAR::LDAModel , BALL::QSAR::LogitModel , BALL::QSAR::Model , BALL::QSAR::NBModel , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation , BALL::QSAR::SNBModel , BALL::QSAR::Validation
• readFromString() : BALL::VIEW::Camera
• readHeader() : BALL::TrajectoryFile , BALL::CCP4File , BALL::DCDFile , BALL::DSN6File
• readHeaderValue_() : BALL::DSN6File
• readHINFile() : BALL::VIEW::MolecularFileDialog
• readInputConfiguration() : BALL::QSAR::ConfigIO
• readInputPartitioningConfiguration() : BALL::QSAR::ConfigIO
• readInvalidRecord() : BALL::PDBFile
• readIonizationEnergies_() : BALL::PartialChargeProcessor
• readKernelParametersFromFile() : BALL::QSAR::KernelModel
• readLabels() : BALL::QSAR::ClassificationModel
• readLights_() : BALL::VIEW::Scene
• readLine() : BALL::LineBasedFile , BALL::PDBFile
• readMatrix() : BALL::ML::MLData , BALL::QSAR::Model , BALL::QSAR::QSARData
• readModelConfiguration() : BALL::QSAR::ConfigIO
• readModelParametersFromFile() : BALL::QSAR::Model
• readMOL2File() : BALL::VIEW::MolecularFileDialog
• readMoleculeSection_() : BALL::MOL2File
• readMOLFile() : BALL::VIEW::MolecularFileDialog
• readMolSystem_() : BALL::NMRStarFile
• readMonomericPolymers_() : BALL::NMRStarFile
• readMSMSFile() : BALL::TSurface< T >
• readNextHeader() : BALL::TRRFile
• readNextRecord() : BALL::PDBFile
• readNMRSpectrometer_() : BALL::NMRStarFile
• readNODE_() : BALL::KCFFile
• readObject() : BALL::PersistenceManager
• readObjectArray() : BALL::PersistenceManager
• readObjectPointer() : BALL::PersistenceManager
• readObjectPointerArray() : BALL::PersistenceManager
• readObjectReference() : BALL::PersistenceManager
• readObjectSmartPointer() : BALL::PersistenceManager
• readOptionFile() : BALL::Options
• readOptions_() : BALL::AssignBondOrderProcessor , BALL::SideChainPlacementProcessor
• readParameters() : BALL::MMFF94ParametersBase
• readPDBFile() : BALL::VIEW::MolecularFileDialog
• readPredictionConfiguration() : BALL::QSAR::ConfigIO
• readPreferenceEntries() : BALL::VIEW::MainControlPreferences , BALL::VIEW::PluginDialog , BALL::VIEW::PythonSettings , BALL::VIEW::PreferencesEntry
• readPrimitive() : BALL::PersistenceManager
• readPropertyBlock_() : BALL::SDFile
• readPropertyNames() : BALL::ML::MLData , BALL::QSAR::QSARData
• readPseudoAtomsConversionTable_() : BALL::Peptides::NameConverter
• readRecords() : BALL::PDBFile
• readResponseTransformationFromFile() : BALL::QSAR::Model
• readSampleConditions_() : BALL::NMRStarFile
• readSamples_() : BALL::NMRStarFile
• readScalingFactors() : BALL::GeneralizedBornModel
• readSCWRLBackboneDependentLibraryFile_() : BALL::SCWRLRotamerFile
• readSCWRLBackboneIndependentLibraryFile_() : BALL::SCWRLRotamerFile
• readSDFile() : BALL::ML::MLData , BALL::QSAR::QSARData , BALL::VIEW::MolecularFileDialog
• readSetSection_() : BALL::MOL2File
• readShiftReferences_() : BALL::NMRStarFile
• readShifts_() : BALL::NMRStarFile
• readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
• readSize_() : BALL::DCDFile
• readStorableObject() : BALL::PersistenceManager
• readSubstructureSection_() : BALL::MOL2File
• readSymmetryRecords() : BALL::CCP4File
• readTrainingData() : BALL::QSAR::Model
• readTrainingResult() : BALL::QSAR::KernelModel
• readUnknownRecord() : BALL::PDBFile
• readValidationConfiguration() : BALL::QSAR::ConfigIO
• readVector() : BALL::QSAR::Model
• readVector_() : BALL::DCDFile
• readXYZFile() : BALL::VIEW::MolecularFileDialog
• REAL : BALL::RegularExpression
• REAL__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• REAL__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• REAL__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• real_renderer_ : BALL::VIEW::TilingRenderer
• rebuild_ : BALL::VIEW::Representation
• REBUILD_DISPLAY_LISTS : BALL::VIEW::SceneMessage , BALL::VIEW::GLRenderer
• rebuildAllRepresentations() : BALL::VIEW::RepresentationManager
• rec_edges_ : BALL::SmartsParser
• rec_matches_ : BALL::SmartsMatcher
• rec_struct_core_ : BALL::SmartsMatcher::RecStruct_
• rec_struct_pool_ : BALL::SmartsMatcher::RecStructPool_
• receive_updates_ : BALL::VIEW::RenderSetup
• received_composite_ : BALL::VIEW::ServerWidget::BALLViewServer
• receivedData() : BALL::SimpleDownloaderHelper::DLHelper
• receiveOptions() : BALL::MPISupport
• receivePersistenceStream_() : BALL::MPISupport
• receiver_ : BALL::VIEW::InputDeviceDriver
• receiverLock : BALL::VIEW::InputDeviceDriver
• receivesBufferUpdates() : BALL::VIEW::RenderSetup
• receiveSystem() : BALL::MPISupport
• receptor_ : BALL::NonpolarSolvation , BALL::RotationalEntropyLoss
• receptor_rings_ : BALL::AromaticRingStacking
• recieve() : BALL::RingPerceptionProcessor::TNode_
• recieve_buffer : BALL::RingPerceptionProcessor::TNode_
• Reciprocal() : BALL::Reciprocal< Function, DataType >
• reconstructFragment() : BALL::ReconstructFragmentProcessor
• ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
• record_animation_action_ : BALL::VIEW::Scene
• record_fields_ : BALL::PDBFile
• record_name : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCONECT , BALL::PDB::RecordCON06 , BALL::PDB::RecordCON061 , BALL::PDB::RecordCON062 , BALL::PDB::RecordCON063 , BALL::PDB::RecordCON064 , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT
• record_serial_number : BALL::PDB::RecordCISPEP
• record_type : BALL::PDB::RecordTypeFormat , BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCONECT , BALL::PDB::RecordCON06 , BALL::PDB::RecordCON061 , BALL::PDB::RecordCON062 , BALL::PDB::RecordCON063 , BALL::PDB::RecordCON064 , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT
• RecordHELIX() : BALL::PDB::RecordHELIX
• recording_ : BALL::VIEW::TestFramework
• RecordMASTER() : BALL::PDB::RecordMASTER
• records_ : BALL::PDBRecords
• RecordSEQRES() : BALL::PDB::RecordSEQRES
• RecordSHEET() : BALL::PDB::RecordSHEET
• RecordSSBOND() : BALL::PDB::RecordSSBOND
• RecordTURN() : BALL::PDB::RecordTURN
• RecStruct_() : BALL::SmartsMatcher::RecStruct_
• RecStructCore_() : BALL::SmartsMatcher::RecStructCore_
• RecStructPool_() : BALL::SmartsMatcher::RecStructPool_
• recurseGeneration_() : BALL::VIEW::MolecularControl
• recursion_() : BALL::ConnectivityBase
• recursive_ : BALL::SmartsParser::SPNode , BALL::SmartsParser
• red_ : BALL::VIEW::ColorRGBA
• RED_CHANNEL : BALL::VIEW::ChannelFormat
• redock_() : BALL::VIEW::DockResultDialog
• redock_partner1_ : BALL::VIEW::DockResultDialog
• redock_partner2_ : BALL::VIEW::DockResultDialog
• REDRAW : BALL::VIEW::SceneMessage
• redraw_queue_ : BALL::SDGenerator
• redrawAllRepresentations() : BALL::VIEW::MainControl
• reduced_surface_ : BALL::SolventExcludedSurface , BALL::SolventAccessibleSurface
• ReducedSurface : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::ReducedSurface
• reduceSelection_() : BALL::VIEW::MainControl
• REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::Option , BALL::BuildBondsProcessor::Default
• reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
• Reference : BALL::PDBRecords
• reference : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::PDBRecords , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::VIEW::CompositeManager , BALL::NMRStarFile::NMRAtomDataSet
• reference_composite_ : BALL::FragmentDistanceCollector
• reference_method : BALL::NMRStarFile::ShiftReferenceElement
• REFERENCE_TEMPERATURE : BALL::MolecularDynamics::Option , BALL::MolecularDynamics::Default
• reference_temperature_ : BALL::MolecularDynamics
• reference_type : BALL::NMRStarFile::ShiftReferenceElement
• refine() : BALL::TriangulatedSphere
• refineGuidePoints_() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
• refineModelParts_() : BALL::VIEW::AddBackboneModel
• reflective_color : BALL::VIEW::Stage::RaytracingMaterial
• reflective_intensity : BALL::VIEW::Stage::RaytracingMaterial
• reflectivenessFactorChanged() : BALL::VIEW::MaterialSettings
• refresh() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderTarget , BALL::VIEW::RenderWindow< taPixelDatatype >
• regex_ : BALL::RegularExpression
• register_ : BALL::VIEW::RegisterHelpSystemMessage
• registerAt() : BALL::LogStreamNotifier
• registerChildEntry() : BALL::VIEW::PluginDialog
• registerClass() : BALL::PersistenceManager
• registerComponents_() : BALL::SLICKEnergy , BALL::SLICKScore
• registerConnectionObject() : BALL::VIEW::ConnectionObject
• registerController() : BALL::VIEW::DatasetControl
• registered_at_ : BALL::LogStreamNotifier
• registered_models : BALL::QSAR::Registry
• registered_modules_ : BALL::ShiftModel
• registered_objects_ : BALL::VIEW::PreferencesEntry
• registerForHelpSystem() : BALL::VIEW::ModularWidget , BALL::VIEW::DockWidget , BALL::VIEW::HelpViewer
• registerHandler() : BALL::PluginManager
• RegisterHelpSystemMessage() : BALL::VIEW::RegisterHelpSystemMessage
• registerInstance_() : BALL::Embeddable
• registerKernelClasses_() : BALL::PersistenceManager
• registerModule() : BALL::ShiftModel
• registerObject_() : BALL::VIEW::PreferencesEntry
• registerObjectCreator() : BALL::VIEW::ServerWidget
• registerPredicate() : BALL::Expression
• registerShortcut() : BALL::VIEW::ShortcutRegistry
• registerStandardModules_() : BALL::ShiftModel
• registerStandardPredicates_() : BALL::Expression
• registerThis() : BALL::Embeddable
• registerTransformation() : BALL::TransformationManager , BALL::File
• registerTypes_() : BALL::MPISupport
• registerWidget() : BALL::VIEW::ModularWidget
• registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
• registerWidgets_() : BALL::VIEW::PreferencesEntry
• Registry : BALL::QSAR::RegistryEntry , BALL::QSAR::Registry
• registry_ : BALL::QSAR::RegistryEntry , BALL::VIEW::ShortcutTableModel
• RegistryEntry : BALL::QSAR::Registry , BALL::QSAR::RegistryEntry
• regr_model_ : BALL::QSAR::RegressionValidation
• regression : BALL::QSAR::RegistryEntry
• regression_statistics : BALL::QSAR::Registry
• RegressionModel() : BALL::QSAR::RegressionModel
• RegressionValidation : BALL::QSAR::KernelModel , BALL::QSAR::LatentVariableModel , BALL::QSAR::Model , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation
• RegularData1DWidget() : BALL::VIEW::RegularData1DWidget
• RegularData2DWidget() : BALL::VIEW::RegularData2DWidget
• RegularData3DController() : BALL::VIEW::RegularData3DController
• RegularExpression() : BALL::RegularExpression
• rehash() : BALL::HashSet< Key >
• rehash_() : BALL::HashSet< Key >
• ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
• reject() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::EditSingleShortcut , BALL::VIEW::FFConfigurationDialog , BALL::VIEW::GeometricFitDialog , BALL::VIEW::MMFF94ConfigurationDialog , BALL::VIEW::Preferences , BALL::VIEW::RaytraceableContourSurfaceDialog
• related_database_entries : BALL::NMRStarFile::MolecularSystem
• RelatedDB() : BALL::NMRStarFile::MolecularSystem::RelatedDB
• relation_type : BALL::NMRStarFile::MolecularSystem::RelatedDB
• relative_ : BALL::VIEW::LightSource
• releaseBuffer() : BALL::VIEW::RenderTarget , BALL::VIEW::RenderWindow< taPixelDatatype >
• RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
• RelNegativePartialCharge() : BALL::RelNegativePartialCharge
• RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
• RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
• RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
• RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
• RelPolarVdWSurface() : BALL::RelPolarVdWSurface
• RelPositivePartialCharge() : BALL::RelPositivePartialCharge
• RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
• RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
• remark_number : BALL::PDB::RecordREMARK
• remark_records : BALL::PDB::BookKeeping
• remoteness_indicator_ : BALL::PDBAtom
• REMOTENESS_INDICATOR__alpha : BALL::PDBAtom
• REMOTENESS_INDICATOR__ALPHA : BALL::PDBAtom
• REMOTENESS_INDICATOR__BETA : BALL::PDBAtom
• REMOTENESS_INDICATOR__beta : BALL::PDBAtom
• REMOTENESS_INDICATOR__delta : BALL::PDBAtom
• REMOTENESS_INDICATOR__DELTA : BALL::PDBAtom
• REMOTENESS_INDICATOR__EPSILON : BALL::PDBAtom
• REMOTENESS_INDICATOR__epsilon : BALL::PDBAtom
• REMOTENESS_INDICATOR__eta : BALL::PDBAtom
• REMOTENESS_INDICATOR__ETA : BALL::PDBAtom
• REMOTENESS_INDICATOR__gamma : BALL::PDBAtom
• REMOTENESS_INDICATOR__GAMMA : BALL::PDBAtom
• REMOTENESS_INDICATOR__UNKNOWN : BALL::PDBAtom
• REMOTENESS_INDICATOR__zeta : BALL::PDBAtom
• REMOTENESS_INDICATOR__ZETA : BALL::PDBAtom
• RemotenessIndicator : BALL::PDBAtom
• remove() : BALL::Molecule , BALL::VIEW::MainControl , BALL::TriangulatedSurface , BALL::Triangle , BALL::GraphFace< Vertex, Edge, Face > , BALL::Residue , BALL::Chain , BALL::HashGridBox3< Item >
• REMOVE : BALL::VIEW::DatasetMessage , BALL::VIEW::RepresentationMessage
• remove() : BALL::LogStream , BALL::HashGrid3< Item > , BALL::List< Value > , BALL::StringHashMap< Value > , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSFace , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::VIEW::CompositeManager , BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager
• remove_() : BALL::VIEW::MainControl
• REMOVE_COORDINATE_SYSTEM : BALL::VIEW::SceneMessage
• remove_correlated : BALL::QSAR::FeatureSelectionConfiguration
• removeAll() : BALL::HashGridBox3< Item >
• removeChild() : BALL::ResourceEntry , BALL::Composite , BALL::ConnectedToPredicate::CTPNode
• removeClippingPlane() : BALL::VIEW::RepresentationManager
• removeComponent() : BALL::ComposedEnergyProcessor , BALL::ForceField , BALL::ScoringFunction
• removeComposite() : BALL::VIEW::MolecularControl
• REMOVED_COMPOSITE : BALL::VIEW::CompositeMessage
• removedComposite() : BALL::VIEW::RepresentationManager
• removeEmptyDescriptors() : BALL::QSAR::FeatureSelection
• removeEntry() : BALL::VIEW::Preferences
• removeFile_() : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
• removeGrid_() : BALL::VIEW::ModifyRepresentationDialog
• removeGridTextures() : BALL::VIEW::RenderSetup
• removeHavingProperty() : BALL::AtomContainer
• removeHighlyCorrelatedCompounds() : BALL::ML::MLData , BALL::QSAR::QSARData
• removeHighlyCorrelatedFeatures() : BALL::QSAR::FeatureSelection
• removeHotkey() : BALL::VIEW::PyWidget
• removeInsideTriangles() : BALL::SASTriangulator
• removeInvalidDescriptors() : BALL::ML::MLData , BALL::QSAR::QSARData
• removeInvalidSubstances() : BALL::ML::MLData , BALL::QSAR::QSARData
• removeItem_() : BALL::VIEW::Preferences , BALL::VIEW::GenericControl
• removeKey() : BALL::ResourceEntry , BALL::ResourceFile
• removeLightPressed() : BALL::VIEW::LightSettings
• removeLightSource() : BALL::VIEW::Stage
• removeLowResponseCorrelation() : BALL::QSAR::FeatureSelection
• removeMenuEntry() : BALL::VIEW::MainControl
• removeModularWidget() : BALL::VIEW::MainControl
• removeNotHavingProperty() : BALL::AtomContainer
• removePluginDirectory() : BALL::PluginManager , BALL::VIEW::PluginDialog
• removeRecursive_() : BALL::VIEW::MolecularControl
• removeRepresentation() : BALL::VIEW::RenderSetup , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer , BALL::VIEW::GeometricControl
• removeSelected() : BALL::Composite
• removeSelection() : BALL::VIEW::HotkeyTable
• removeSolvent() : BALL::PeriodicBoundary
• removeTextureFor_() : BALL::VIEW::GLRenderer
• removeUnselected() : BALL::Composite
• rename() : BALL::Directory , BALL::File , BALL::VIEW::SnapshotManagerInterface
• renameRepresentation() : BALL::VIEW::GeometricControl
• renameTo() : BALL::Directory , BALL::File
• rend() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::ConstReverseIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::Gradient
• rendBond() : BALL::Atom
• rendChildComposite() : BALL::Composite
• rendComposite() : BALL::Composite
• render() : BALL::VIEW::GLRenderer
• render_() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• render_mode_ : BALL::VIEW::GLRenderer
• RENDER_MODE_ALWAYS_FRONT : BALL::VIEW::GLRenderer
• RENDER_MODE_SOLID : BALL::VIEW::GLRenderer
• RENDER_MODE_TRANSPARENT : BALL::VIEW::GLRenderer
• RENDER_MODE_UNDEFINED : BALL::VIEW::GLRenderer
• render_mutex_ : BALL::VIEW::RenderSetup
• render_timer_ : BALL::VIEW::MainControl
• renderBox_() : BALL::VIEW::Renderer , BALL::VIEW::GLRenderer
• renderClippingPlane_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderDashedBond_() : BALL::VIEW::AddBallAndStickModel
• renderDisc_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
• Renderer() : BALL::VIEW::Renderer
• renderer : BALL::VIEW::RenderSetup
• rendererChanged() : BALL::VIEW::MaterialSettings
• renderers_ : BALL::VIEW::Scene
• renderGrid_() : BALL::VIEW::EditableScene
• renderGridVisualisation_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• rendering_paused_ : BALL::VIEW::RenderSetup
• renderLabel_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
• renderLine_() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::GLRenderer
• renderMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
• RenderMode : BALL::VIEW::GLRenderer
• renderMultiLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::POVRenderer
• renderMultipleBond_() : BALL::VIEW::AddBallAndStickModel
• renderNucleotideOutline_() : BALL::VIEW::AddCartoonModel
• renderOneRepresentation() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer , BALL::VIEW::POVRenderer
• renderPoint_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
• renderQuadMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderRepresentation_() : BALL::VIEW::GLRenderer
• renderRepresentations_() : BALL::VIEW::GLRenderer
• renderRuler() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• renderSD_() : BALL::VIEW::SDWidget
• RenderSetup : BALL::VIEW::Scene , BALL::VIEW::RenderSetup
• renderSimpleBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderSphere_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• renderStandardBond_() : BALL::VIEW::AddBallAndStickModel
• renderText() : BALL::VIEW::GLRenderWindow
• renderToBuffer() : BALL::VIEW::GLRenderer , BALL::VIEW::BufferedRenderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer
• renderToBuffer_() : BALL::VIEW::RenderSetup
• renderToBufferImpl() : BALL::VIEW::BufferedRenderer
• renderTube_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
• renderTwoColoredLine_() : BALL::VIEW::VRMLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::Renderer
• renderTwoColoredTube_() : BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer
• RenderWindow() : BALL::VIEW::RenderWindow< taPixelDatatype >
• reopen() : BALL::File
• rep_ : BALL::VIEW::DisplayProperties , BALL::VIEW::UpdateRepresentationThread , BALL::VIEW::ModifyRepresentationDialog
• rep_label_ : BALL::VIEW::MainControl
• rep_label_delta_ : BALL::VIEW::MainControl
• rep_label_nr_ : BALL::VIEW::MainControl
• rep_to_buffers_ : BALL::VIEW::GLRenderer
• replace() : BALL::Composite
• replacing_entry_code : BALL::PDB::RecordOBSLTE
• reply_ : BALL::SimpleDownloaderHelper::BasicHelper
• Representation() : BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::Representation
• representation_ : BALL::RadialDistributionFunction , BALL::VIEW::RepresentationMessage
• representation_to_item_ : BALL::VIEW::GeometricControl
• RepresentationManager : BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager , BALL::VIEW::Representation
• RepresentationMessage() : BALL::VIEW::RepresentationMessage
• RepresentationMessageType : BALL::VIEW::RepresentationMessage
• representations_ : BALL::VIEW::POVRenderer , BALL::VIEW::RepresentationManager
• RepresentationsConstIterator : BALL::VIEW::RepresentationManager
• RepresentationSet : BALL::VIEW::RepresentationManager
• RepresentationsIterator : BALL::VIEW::RepresentationManager
• reps : BALL::VIEW::ExportGeometryDialog
• reps_ : BALL::VIEW::ClippingPlane
• request_ : BALL::PubChemDownloader
• res : BALL::HBondProcessor::ResidueData
• rescale() : BALL::TRegularData1D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TRegularData2D< ValueType >
• reset() : BALL::Path , BALL::Timer , BALL::VIEW::EditSingleShortcut , BALL::VIEW::PropEditorWidget , BALL::Mainframe , BALL::VIEW::GeometricFitDialog , BALL::VIEW::DockDialog , BALL::VIEW::PropertyEditor
• reset_() : BALL::VIEW::PropEditorWidget , BALL::VIEW::BoolEditorWidget , BALL::VIEW::DoubleEditorWidget , BALL::VIEW::PDBInfoEditorWidget , BALL::VIEW::PropDeleteWidget , BALL::VIEW::IntEditorWidget , BALL::VIEW::UIntEditorWidget , BALL::VIEW::FloatEditorWidget , BALL::VIEW::StringEditorWidget
• resetBondOrders() : BALL::AssignBondOrderProcessor
• resetCamera_() : BALL::VIEW::Scene
• resetCounter() : BALL::TContour< T > , BALL::TContourLine< T >
• resetLanguageChanged() : BALL::VIEW::MainControlPreferences
• resetOptions() : BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::FFConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::MMFF94ConfigurationDialog
• resetPositions() : BALL::AtomVector
• resetPredicate() : BALL::AtomIteratorTraits , BALL::MoleculeIteratorTraits , BALL::NucleicAcidIteratorTraits , BALL::ResidueIteratorTraits , BALL::PDBAtomIteratorTraits , BALL::FragmentIteratorTraits , BALL::AtomContainerIteratorTraits , BALL::ProteinIteratorTraits , BALL::ChainIteratorTraits , BALL::NucleotideIteratorTraits , BALL::SecondaryStructureIteratorTraits
• resetPressed() : BALL::VIEW::FDPBDialog , BALL::VIEW::DockDialog
• resetRepresentationsForRenderer_() : BALL::VIEW::Scene
• resetScoring() : BALL::ConformationSet
• resetTo_pressed() : BALL::VIEW::UndoManagerDialog
• resetTracking() : BALL::VIEW::Scene
• residue : BALL::PDB::RecordHETATM
• Residue() : BALL::PDB::Residue
• residue : BALL::PDB::RecordTER , BALL::PDB::Structure::AtomEntry , BALL::PDB::RecordANISOU , BALL::PDB::RecordSITE , BALL::PDB::RecordHYDBND::HydrogenAtom , BALL::PDB::RecordLINK::LinkPartner , BALL::PDB::RecordMODRES , BALL::PDB::RecordCISPEP
• Residue() : BALL::Residue
• residue : BALL::PDB::RecordSIGUIJ
• Residue() : BALL::Residue
• residue : BALL::PDB::RecordATOM , BALL::PDB::RecordHET , BALL::PDB::RecordHYDBND::HydrogenPartnerAtom , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSLTBRG::PartnerAtom
• residue_data_ : BALL::HBondProcessor
• residue_id : BALL::PDB::AdditionalAtomInfo
• residue_in_current_strand : BALL::PDB::RecordSHEET
• residue_in_previous_strand : BALL::PDB::RecordSHEET
• residue_insertion_code : BALL::PDB::AdditionalAtomInfo
• residue_label : BALL::NMRStarFile::NMRAtomData
• residue_map_ : BALL::PDBFile , BALL::VIEW::ResidueNumberColorProcessor
• residue_name : BALL::PDB::AdditionalAtomInfo , BALL::ResidueTorsions::Data , BALL::PDB::RecordSEQRES
• residue_name_ : BALL::PDBFile
• residue_ptr_to_position_ : BALL::HBondProcessor
• residue_seq_code : BALL::NMRStarFile::NMRAtomData
• residue_sequence : BALL::NMRStarFile::MonomericPolymer
• residue_sequence_number_ : BALL::PDBFile
• residue_torsions_ : BALL::CharmmTorsion
• ResidueChecker() : BALL::ResidueChecker
• ResidueIteratorTraits() : BALL::ResidueIteratorTraits
• ResidueMap : BALL::PDBFile
• ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
• ResidueNumberColorProcessor() : BALL::VIEW::ResidueNumberColorProcessor
• ResidueQuadruple : BALL::PDBFile
• ResidueRotamerSet() : BALL::ResidueRotamerSet
• residues : BALL::VIEW::AddBackboneModel::ModelPart
• residues_by_index : BALL::NMRStarFile::MonomericPolymer
• residues_to_be_rendered_ : BALL::VIEW::AddBackboneModel
• residues_with_rings_ : BALL::JohnsonBoveyShiftProcessor
• residuesAreConnected_() : BALL::VIEW::AddBackboneModel
• ResidueTorsions() : BALL::ResidueTorsions
• ResidueTypeColorProcessor() : BALL::VIEW::ResidueTypeColorProcessor
• resize() : BALL::TRegularData1D< ValueType > , BALL::AtomVector , BALL::VIEW::MainControl , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::RenderSetup , BALL::PDBRecords , BALL::VIEW::FrameBufferFormat , BALL::VIEW::RenderWindow< taPixelDatatype > , BALL::VIEW::GLRenderWindow , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::RenderTarget
• resize_() : BALL::SmartsMatcher::RecStructPool_
• resize_to_parent_ : BALL::VIEW::SDWidget
• resized() : BALL::VIEW::FrameBufferFormat
• resizeEvent() : BALL::VIEW::DockableRegularData2DWidget , BALL::VIEW::Scene , BALL::VIEW::TextEditorWidget , BALL::VIEW::DockableRegularData1DWidget
• resizeGrid() : BALL::VIEW::RegularData3DController
• resizeNormals() : BALL::TSurface< T >
• resizeTriangles() : BALL::TSurface< T >
• resizeVertices() : BALL::TSurface< T >
• Resolution() : BALL::VIEW::Resolution
• resolvePseudoAtoms() : BALL::Peptides::NameConverter
• ResourceEntry() : BALL::ResourceEntry
• ResourceFile() : BALL::ResourceFile
• restart_ : BALL::TCPServer
• restart_frequency_ : BALL::ConjugateGradientMinimizer
• restoreDefaultValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
• restoreItem_() : BALL::VIEW::AtomOverview
• restoreRepresentations() : BALL::VIEW::RepresentationManager
• restoreTrainingResults() : BALL::QSAR::RegressionValidation
• restoreValues() : BALL::VIEW::PreferencesEntry , BALL::VIEW::LightSettings
• restoreValues_() : BALL::VIEW::PreferencesEntry
• restoreViewPoint() : BALL::VIEW::Scene
• restoreWindows() : BALL::VIEW::MainControl
• Result : BALL::Processor , BALL::RMSDMinimizer
• result_ : BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::DLArrayHelper , BALL::RombergIntegrator< Function, DataType >
• result_type : BALL::UnaryFunctor< ArgumentType, ResultType > , BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• results : BALL::FDPB
• results_ : BALL::VIEW::PyWidget
• retrieveHistoryLine_() : BALL::VIEW::PyWidget
• retrieveSymOps_() : BALL::CrystalInfo
• return_average_ : BALL::CubicSpline2D , BALL::CubicSpline1D
• returnPressed() : BALL::VIEW::PyWidget
• reverse() : BALL::String
• reverse_iterator : BALL::PDBRecords
• ReverseIterator : BALL::PDBRecords , BALL::Gradient , BALL::ReverseIterator< Container, DataType, Position, Traits >
• revert() : BALL::GraphEdge< Vertex, Edge, Face >
• rewind() : BALL::LineBasedFile
• Rf : BALL::Element
• RGB_24 : BALL::VIEW::PixelFormat
• RGB_32 : BALL::VIEW::PixelFormat
• RGB_3_2_2 : BALL::VIEW::PixelFormat
• RGBA_32 : BALL::VIEW::PixelFormat
• RGBF_96 : BALL::VIEW::PixelFormat
• Rh : BALL::Element
• RHENIUM : BALL::Element
• rho : BALL::QSAR::LibsvmModel::svm_model
• rho_ : BALL::StrangLBFGSMinimizer
• RHO_0 : BALL::GeneralizedBornModel::Option , BALL::GeneralizedBornModel::Default
• rho_0_ : BALL::GeneralizedBornModel::GBParameters , BALL::GeneralizedBornModel
• RHODIUM : BALL::Element
• RIBBON : BALL::VIEW::AddBackboneModel
• ribbon_height_ : BALL::VIEW::AddBackboneModel
• ribbon_mode_ : BALL::VIEW::AddBackboneModel
• ribbon_radius_ : BALL::VIEW::AddCartoonModel
• ribbon_width_ : BALL::VIEW::AddCartoonModel , BALL::VIEW::AddBackboneModel
• ribbonModeEnabled() : BALL::VIEW::AddBackboneModel
• ribbonsEnabled() : BALL::VIEW::AddCartoonModel
• right() : BALL::String
• right_ : BALL::VIEW::GLRenderer
• RIGHT_EYE : BALL::VIEW::RenderSetup
• RIGHT_EYE_WINDOW : BALL::VIEW::Scene
• right_vector_ : BALL::TBox3< T > , BALL::VIEW::Camera
• rij : BALL::MMFF94NonBonded::NonBondedPairData
• rij_ : BALL::MMFF94VDWParameters
• rij_7 : BALL::MMFF94NonBonded::NonBondedPairData
• rij_7_ : BALL::MMFF94VDWParameters
• Ring() : BALL::RingAnalyser::Ring
• ring_analyser_ : BALL::SDGenerator
• ring_atoms_ : BALL::RingFinder , BALL::VIEW::AtomBondModelBaseProcessor , BALL::HaighMallionShiftProcessor , BALL::AddHydrogenProcessor , BALL::CHPI::AromaticRing
• ring_bonds_ : BALL::VIEW::AddBallAndStickModel
• RING_CONNECTED : BALL::SmartsParser::SPAtom
• ring_connections_ : BALL::SmartsParser
• ring_proc_ : BALL::SMARTSPredicate
• ring_systems_ : BALL::RingAnalyser
• RingAnalyser() : BALL::RingAnalyser
• RingFinder() : BALL::RingFinder
• ringIsClockwise_() : BALL::SDGenerator
• RingPerceptionProcessor() : BALL::RingPerceptionProcessor
• rings_ : BALL::Kekuliser , BALL::RingAnalyser , BALL::MMFF94 , BALL::JohnsonBoveyShiftProcessor , BALL::RingPerceptionProcessor , BALL::AtomTyper , BALL::VIEW::AtomBondModelBaseProcessor
• rings_per_bond_ : BALL::RingAnalyser
• RingType : BALL::RingAnalyser
• rms : BALL::Gradient
• RMS_CRITERION : BALL::FDPB::Option , BALL::FDPB::Default
• rmsd_ : BALL::StructureMapper
• Rn : BALL::Element
• RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
• root : BALL::GAFFCESParser
• root_ : BALL::VIEW::AssignBondOrderResultsDialog , BALL::ResourceFile , BALL::SmartsParser
• root_atom : BALL::MOL2File::SubstructureStruct
• root_predicate : BALL::GAFFCESParser
• ROT_ALGORITHM : BALL::RotationalEntropyLoss::Default , BALL::RotationalEntropyLoss::Option
• ROT_BIND_OFFSET : BALL::RotationalEntropyLoss::Default , BALL::RotationalEntropyLoss::Option
• ROT_GRID_SPACING : BALL::RotationalEntropyLoss::Option , BALL::RotationalEntropyLoss::Default
• ROT_METHOD : BALL::RotationalEntropyLoss::Option , BALL::RotationalEntropyLoss::Default
• Rotamer() : BALL::Rotamer
• RotamerLibrary() : BALL::RotamerLibrary
• rotamers_ : BALL::ResidueRotamerSet
• rotatable_bonds_ : BALL::RotationalEntropyLoss
• rotate() : BALL::VIEW::Scene , BALL::VIEW::Camera , BALL::TMatrix4x4< T > , BALL::VIEW::Camera , BALL::TMatrix4x4< T >
• ROTATE__MODE : BALL::VIEW::Scene
• ROTATE_ACTION : BALL::VIEW::Scene
• rotate_action_ : BALL::VIEW::Scene
• ROTATE_CLOCKWISE_ACTION : BALL::VIEW::Scene
• rotateBases() : BALL::DNAMutator
• rotateClockwise() : BALL::VIEW::Scene
• rotateComposites() : BALL::VIEW::Scene
• rotateMode_() : BALL::VIEW::Scene
• rotateSameBases() : BALL::DNAMutator
• rotateSystem_() : BALL::VIEW::Scene
• rotateSystemClockwise_() : BALL::VIEW::Scene
• rotateVector3Angle_() : BALL::VIEW::GLRenderer
• rotateX() : BALL::TMatrix4x4< T >
• rotateY() : BALL::TMatrix4x4< T >
• rotateZ() : BALL::TMatrix4x4< T >
• rotation_ : BALL::VIEW::POVRenderer , BALL::VIEW::TransformationEvent6D , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• RotationalEntropyLoss() : BALL::RotationalEntropyLoss
• RotationAngles_() : BALL::GeometricFit::RotationAngles_
• row_ : BALL::VIEW::AtomOverview::ApplyProcessor
• row_averages_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• row_axis_ : BALL::CCP4File
• row_spacing_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• rowCount() : BALL::VIEW::PluginModel , BALL::VIEW::ShortcutTableModel
• RowIteratorTraits() : BALL::RowIteratorTraits< valuetype, mtraits >
• rowSelected() : BALL::VIEW::PythonSettings
• RRModel() : BALL::QSAR::RRModel
• rs_ : BALL::RSComputer , BALL::MMFF94VDWParameters
• RSComputer : BALL::RSVertex , BALL::RSEdge , BALL::ReducedSurface , BALL::RSComputer , BALL::RSFace , BALL::RSComputer
• RSEdge() : BALL::RSEdge , BALL::RSVertex , BALL::RSEdge , BALL::RSFace
• rsedge_ : BALL::SESEdge , BALL::SESFace
• RSFace() : BALL::RSFace , BALL::RSEdge , BALL::RSFace , BALL::RSVertex
• rsface_ : BALL::SESFace
• RSVertex : BALL::RSFace , BALL::RSVertex , BALL::RSEdge , BALL::RSVertex
• rsvertex_ : BALL::SESFace
• rt_contour_surface_dialog_ : BALL::VIEW::RaytraceableGridController
• rt_material_ : BALL::VIEW::Stage
• Ru : BALL::Element
• RUBIDIUM : BALL::Element
• rule_map_ : BALL::RuleEvaluator
• rule_times : BALL::AtomTyper
• rule_types_ : BALL::MMFF94ChargeProcessor
• RuleEvaluator() : BALL::RuleEvaluator
• RuleList : BALL::RuleEvaluator
• RuleMap : BALL::RuleEvaluator
• RuleProcessor() : BALL::RuleProcessor
• rules_ : BALL::AtomTyper
• run() : BALL::VIEW::FakeDriver , BALL::SESTriangulator , BALL::SASTriangulator , BALL::TCPServerThread , BALL::VIEW::CalculateFDPBThread , BALL::SESComputer , BALL::SESSingularityCleaner , BALL::VIEW::DockingThread , BALL::VIEW::RenderSetup , BALL::VIEW::AnimationThread , BALL::RSComputer , BALL::VIEW::PubChemDialogPrivate::DownloadHelper , BALL::VIEW::RunPythonThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::SimpleDownloaderHelper::HelperThread , BALL::VIEW::BALLThread , BALL::PyInterpreter , BALL::VIEW::TestFramework::MyEventThread , BALL::VIEW::MDSimulationThread , BALL::VIEW::EnergyMinimizerThread , BALL::VIEW::UpdateRepresentationThread , BALL::VIEW::ServerWidget::BALLViewServer
• run_test : BALL::VIEW::TestFramework
• runBondOrderAssignment() : BALL::VIEW::MolecularStructure
• runCommand_() : BALL::VIEW::PyWidget
• runCurrentScript() : BALL::VIEW::PyWidget
• runDocking() : BALL::VIEW::DockingController
• runFile() : BALL::PyInterpreter
• RunGAMESSDialog() : BALL::VIEW::RunGAMESSDialog
• runMinimization() : BALL::VIEW::MolecularStructure
• running_ : BALL::VIEW::PyWidget
• running_plugins_ : BALL::PluginHandler
• RunPythonThread() : BALL::VIEW::RunPythonThread
• runScoring_() : BALL::VIEW::DockingController
• runString() : BALL::VIEW::PyWidget
• runTest() : BALL::VIEW::TestFramework
• runtime_ : BALL::VIEW::TestFramework
• RUTHENIUM : BALL::Element
• RUTHERFORDIUM : BALL::Element