- p -

• P : BALL::Rotamer
• p : BALL::TCircle3< T > , BALL::TLine3< T > , BALL::TPlane3< T > , BALL::TriangulatedSphere::Face , BALL::TSphere3< T > , boost::hash< RTpieCpp::InstanceHandle >::conv , boost::hash< RTpieCpp::MeshHandle >::conv
• P_ : BALL::RingPerceptionProcessor
• p_i_ : BALL::ConjugateGradientMinimizer
• p_t_ : BALL::ConjugateGradientMinimizer
• pair_items : BALL::CIFFile::SaveFrame
• pairwise_scores_ : BALL::PoseClustering
• par1 : BALL::QSAR::Kernel
• par2 : BALL::QSAR::Kernel
• parameter_filename_ : BALL::DockingAlgorithm
• parameterDefaults : BALL::QSAR::RegistryEntry
• parameterNames : BALL::QSAR::RegistryEntry
• parameters_ : BALL::ClaverieParameter , BALL::ForceField , BALL::GeneticAlgorithm , BALL::MMFF94BendParameters , BALL::MMFF94ESParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94StretchParameters , BALL::MMFF94Torsion , BALL::MMFF94TorsionParameters , BALL::MMFF94VDWParameters , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModel , BALL::ShiftModule
• parameters_by_row_ : BALL::MMFF94StretchBendParameters
• parameters_initialized_ : BALL::AmberFF , BALL::CharmmFF , BALL::MMFF94
• parent : BALL::GAFFCESParser::CESPredicate , BALL::HashGridBox3< Item >
• parent_ : BALL::ConformationSet , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::NMRStarFile::NMRAtomDataSet , BALL::SimpleDownloaderHelper::HelperThread , BALL::VIEW::AtomOverview
• PARENT_DIRECTORY : BALL::FileSystem
• parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
• parents_ : BALL::RingPerceptionProcessor
• parity : BALL::MOLFile::AtomStruct
• pars_ : BALL::Bruker1DFile
• PARSE_INI_FILE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PARSE_PARTIAL_CHARGES : BALL::PDBFile::Default , BALL::PDBFile::Option
• parse_partial_charges_ : BALL::PDBFile
• parser_ : BALL::GAFFCESParser::CESPredicate
• parsf1_ : BALL::Bruker2DFile
• parsf2_ : BALL::Bruker2DFile
• partial_charge : BALL::PDB::RecordATOM
• partner_atom : BALL::PDB::RecordSLTBRG
• partner_residue : BALL::PDB::RecordSSBOND
• partner_type_to_htype_ : BALL::MMFF94AtomTyper
• past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• paste_action_ : BALL::VIEW::MolecularControl
• paste_id_ : BALL::VIEW::MolecularControl
• path_ : BALL::Path , BALL::SimpleDownloaderHelper::HelperThread
• path_array_ : BALL::Path
• path_array_valid_ : BALL::Path
• PATH_SEPARATOR : BALL::FileSystem
• pause_ : BALL::DockingAlgorithm
• pb_solver_ : BALL::PB
• pbcis_ : BALL::MMFF94ESParameters
• pbuf_ : BALL::LogStreamBuf
• pcount : BALL::TriangulatedSphere::Face
• PDB_atom_map_ : BALL::PDBFile
• pdb_id : BALL::PDB::AdditionalAtomInfo
• peak_list_ : BALL::Experiment< PeakListType >
• peak_set_ : BALL::GeometricFit
• peaklist_ : BALL::CreateSpectrumProcessor
• peaks_ : BALL::ShiftModel1D , BALL::ShiftModel2D
• peeling_order_ : BALL::RingAnalyser
• penalties_ : BALL::AssignBondOrderProcessor , BALL::FPTBondOrderStrategy
• penalty : BALL::FPTBondOrderStrategy::Assignment_
• penalty_ : BALL::Constraint
• PENALTY_MOBILE : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• PENALTY_STATIC : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• periodic_boundary : BALL::ForceField
• PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Default , BALL::PeriodicBoundary::Option
• permutation : BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound >::QuickBBState
• phase : BALL::AmberTorsion::SingleAmberTorsion , BALL::CharmmTorsion::SingleCharmmTorsion , BALL::CosineTorsion::SingleValues , BALL::QuadraticImproperTorsion::Values
• phi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
• phi_grid : BALL::FDPB
• PHI_MAX : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• PHI_MIN : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• phis_ : BALL::MMFF94ESParameters
• PI : BALL::Constant
• pi_ : BALL::PoseClustering
• pick_select_ : BALL::VIEW::PickingMode
• picking_mode_ : BALL::VIEW::GLRenderer
• pilp : BALL::MMFF94AtomType
• pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
• pixmap_ : BALL::VIEW::CanvasWidget::PixmapItem
• planBackward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• planCalculated_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• PLANCK : BALL::Constant
• plane_ : BALL::VIEW::SetClippingPlane
• plane_to_item_ : BALL::VIEW::GeometricControl
• planForward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• plus_ : BALL::DSN6File
• point : BALL::RSComputer::ProbePosition , BALL::SESSingularityCleaner::ProbeIntersection
• point_ : BALL::SASVertex , BALL::SESTriangulator , BALL::SESVertex , BALL::TBox3< T > , BALL::TrianglePoint , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
• point_ptr_ : BALL::VIEW::Sphere
• pointer_list_ : BALL::PersistenceManager
• pointer_map_ : BALL::PersistenceManager
• points : BALL::VIEW::GridVisualisation
• points_ : BALL::TriangulatedSurface
• POL_ES_THRESHOLD : BALL::Polarity
• POLAR : BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Default , BALL::SLICKScore::Option
• POLAR_AVG : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_CHARGE_RULES : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_GB : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_METHOD : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_RADIUS_RULES : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• polymer_class : BALL::NMRStarFile::MonomericPolymer
• pool_ : BALL::SmartsMatcher
• pools_ : BALL::GeneticAlgorithm
• POPULATION : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• POPULATION_NUMBER : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• population_size_ : BALL::GeneticAlgorithm
• port_ : BALL::TCPServer , BALL::VIEW::ServerWidget::BALLViewServer
• pos_C : BALL::HBondProcessor::ResidueData
• pos_H : BALL::HBondProcessor::ResidueData
• pos_N : BALL::HBondProcessor::ResidueData
• pos_O : BALL::HBondProcessor::ResidueData
• posbridges_ : BALL::SecondaryStructureProcessor
• poses : BALL::PoseClustering::ClusterProperties
• poses_ : BALL::PoseClustering
• position : BALL::HMOFile::HMOCharge , BALL::MOL2File::AtomStruct , BALL::MOLFile::AtomStruct
• position_ : BALL::Atom , BALL::Composite::CompositeIteratorTraits , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::HashSet< Key >::IteratorTraits , BALL::Peak< PositionType > , BALL::VIEW::LightSource
• position_data_size : BALL::TRRFile::TRRHeader
• POSITION_VALUE_NA : BALL::NMRStarFile
• post_dock_optimization_ : BALL::DockProblem
• POST_OPTIMIZATION_STEP_WIDTH : BALL::IMGDock::Default , BALL::IMGDock::Option
• POST_OPTIMIZATION_STEPS : BALL::IMGDock::Default , BALL::IMGDock::Option
• potential_energy_ : BALL::SnapShot
• potential_grid_ : BALL::VIEW::FieldLineCreator
• pov_nr_ : BALL::VIEW::Scene
• pre_translation_a_ : BALL::GeometricFit
• pre_translation_b_ : BALL::GeometricFit
• PRECISION : BALL::BinaryFingerprintMethods::Default , BALL::BinaryFingerprintMethods::Option
• precision_ : BALL::TRRFile
• predicate : BALL::ExpressionParser::SyntaxTree
• predicate_ : BALL::CompositeIteratorTraits , BALL::ExpressionTree
• predicted_affinities_ : BALL::Rescoring
• PREDICTION_METHOD : BALL::HBondProcessor::Default , BALL::HBondProcessor::Option
• predictions : BALL::ScoringOptimizer::Result
• preferences_ : BALL::VIEW::DisplayProperties , BALL::VIEW::PyWidget
• preferences_action_ : BALL::VIEW::MainControl
• preferences_dialog_ : BALL::VIEW::MainControl
• preferences_file_ : BALL::VIEW::MainControl
• prefix : BALL::LogStreamBuf::StreamStruct
• prefix_ : BALL::RuleEvaluator , BALL::VIEW::DownloadPDBFile
• pres_size : BALL::TRRFile::TRRHeader
• PRESSURE : BALL::PierottiCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option
• prev_shift_val_ : BALL::ShiftedLVMMMinimizer
• primitive_manager_ : BALL::VIEW::MainControl
• print_expected : BALL::QSAR::PredictionConfiguration
• PRINT_TIMING : BALL::FDPB::Default , BALL::FDPB::Option
• priority_queue_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• probabilities_ : BALL::GeneticAlgorithm
• probe_group_ : BALL::GridAnalysis
• probe_intersections_ : BALL::SESSingularityCleaner
• PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• probe_positions_ : BALL::RSComputer
• PROBE_RADIUS : BALL::FDPB::Default , BALL::FDPB::Option , BALL::NonpolarSolvation::Default , BALL::NonpolarSolvation::Option , BALL::NumericalSAS::Default , BALL::NumericalSAS::Option , BALL::PCMCavFreeEnergyProcessor::Default , BALL::PCMCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option , BALL::UhligCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Option
• probe_radius_ : BALL::ReducedSurface , BALL::SurfaceProcessor
• PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• processor_ : BALL::VIEW::AtomOverview
• prod_ : BALL::DSN6File
• progress_bar_ : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
• project_ : BALL::VIEW::HelpViewer , BALL::VIEW::ShowHelpMessage
• project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
• projection_mode_ : BALL::VIEW::Camera
• properties_ : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::SmartsParser::SPAtom
• properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
• PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
• PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
• PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
• PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
• PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
• PROPERTY__RING_CURRENT_SHIFT : BALL::HaighMallionShiftProcessor , BALL::JohnsonBoveyShiftProcessor
• PROPERTY__SHIFT : BALL::ShiftModule
• property_files_ : BALL::EmpiricalHSShiftProcessor
• property_pairs_ : BALL::EmpiricalHSShiftProcessor
• protein_ : BALL::Rescoring1D , BALL::VIEW::PeptideDialog
• proteinname_ : BALL::Peptides::PeptideBuilder
• proton_list_ : BALL::AnisotropyShiftProcessor , BALL::JohnsonBoveyShiftProcessor
• PROTON_MASS : BALL::Constant
• PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default , BALL::Peptides::NameConverter::Option
• pseudo_conventions_ : BALL::Peptides::NameConverter
• pseudo_conversion_table_ : BALL::Peptides::NameConverter
• psi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
• PSI_MAX : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• PSI_MIN : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• pte_ : BALL::VIEW::EditFunctions
• ptr_ : BALL::TContourSurface< T >::Cube
• PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PW_SQUARE_WELL : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• python_format : BALL::VIEW::PythonHighlighter
• python_keywords : BALL::VIEW::PythonHighlighter
• python_line_ : BALL::VIEW::TestFramework
• python_patterns : BALL::VIEW::PythonHighlighter
• python_settings_ : BALL::VIEW::PyWidget