- r -

• R : BALL::Constant
• r : BALL::FDPB::FastAtomStruct
• r0 : BALL::MMFF94StretchBend::Stretch , BALL::MMFF94StretchParameters::EmpiricalBondData , BALL::QuadraticBondStretch::Values
• r0_ : BALL::QuadraticBondStretch
• r0_normal : BALL::MMFF94StretchParameters::BondData
• r0_sbmb : BALL::MMFF94StretchParameters::BondData
• r_direction_ : BALL::VIEW::LightSource
• R_ij_o_ : BALL::PairExpRDFIntegrator
• r_max_ : BALL::ReducedSurface
• r_min : BALL::CharmmEEF1::Values
• R_min_ : BALL::CharmmEEF1
• r_position_ : BALL::VIEW::LightSource
• RAD_PER_DEG : BALL::Constant
• radii : BALL::MMFF94StretchParameters
• radii_ : BALL::ElectrostaticPotentialCalculator
• radius : BALL::JohnsonBoveyShiftProcessor::Ring , BALL::SolventAtomDescriptor , BALL::TCircle3< T > , BALL::TSphere3< T >
• radius_ : BALL::Atom , BALL::VIEW::HBondModelProcessor
• radius_a_ : BALL::GeometricFit
• radius_b_ : BALL::GeometricFit
• RADIUS_CARBON : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• radius_factor_ : BALL::VIEW::AddVanDerWaalsModel
• RADIUS_HYDROGEN : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• RADIUS_NITROGEN : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• radius_of_torus_ : BALL::RSEdge
• radius_offset_ : BALL::SurfaceProcessor
• RADIUS_OXYGEN : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• radius_processor_ : BALL::VIEW::FDPBDialog
• radius_rule_processor_ : BALL::VIEW::FDPBDialog
• RADIUS_SULFUR : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• rank_ : BALL::MPISupport
• rb_ : BALL::DockProblem , BALL::VIEW::Scene
• rdf_ : BALL::RDFIntegrator , BALL::RDFSection
• RDF_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• rdf_indices_ : BALL::RDFParameter
• rdf_integrator_ : BALL::Pair6_12InteractionEnergyProcessor
• rdf_list_ : BALL::RDFParameter
• rdf_parameter_ : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• reacting_center_status : BALL::MOLFile::BondStruct
• reaction_component_number : BALL::MOLFile::AtomStruct
• reaction_component_type : BALL::MOLFile::AtomStruct
• reaction_field_energy_ : BALL::FDPB
• read_all_pdb_models_ : BALL::VIEW::MolecularFileDialog
• read_atoms_ : BALL::SDFile
• read_done_ : BALL::PDBFile
• read_sd_descriptors : BALL::QSAR::InputConfiguration
• read_start_ : BALL::GAFFCESParser
• REAL : BALL::RegularExpression
• real_renderer_ : BALL::VIEW::TilingRenderer
• rebuild_ : BALL::VIEW::Representation
• rec : BALL::IMGDock
• rec_edges_ : BALL::SmartsParser
• rec_matches_ : BALL::SmartsMatcher
• receive_updates_ : BALL::VIEW::RenderSetup
• received_composite_ : BALL::VIEW::ServerWidget::BALLViewServer
• receptor_ : BALL::DockingAlgorithm , BALL::ScoringFunction
• receptor_atoms_ : BALL::PB
• recieve_buffer : BALL::RingPerceptionProcessor::TNode_
• record_animation_action_ : BALL::VIEW::Scene
• record_fields_ : BALL::PDBFile
• record_name : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCON061 , BALL::PDB::RecordCON062 , BALL::PDB::RecordCON063 , BALL::PDB::RecordCON064 , BALL::PDB::RecordCON06 , BALL::PDB::RecordCONECT , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT
• record_serial_number : BALL::PDB::RecordCISPEP
• record_type : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCON061 , BALL::PDB::RecordCON062 , BALL::PDB::RecordCON063 , BALL::PDB::RecordCON064 , BALL::PDB::RecordCON06 , BALL::PDB::RecordCONECT , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT , BALL::PDB::RecordTypeFormat
• recording_ : BALL::VIEW::TestFramework
• records_ : BALL::PDBRecords
• recursive_ : BALL::SmartsParser , BALL::SmartsParser::SPNode
• redraw_ : BALL::DockProblem
• redraw_queue_ : BALL::SDGenerator
• reduced_surface_ : BALL::SolventAccessibleSurface , BALL::SolventExcludedSurface
• REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::Default , BALL::BuildBondsProcessor::Option
• refArea_penalties : BALL::ScoringFunction::Result
• reference : BALL::NMRStarFile::NMRAtomDataSet
• reference_center_ : BALL::EvolutionaryDocking
• reference_composite_ : BALL::FragmentDistanceCollector
• reference_interactions : BALL::ScoreGridSet
• reference_ligand_ : BALL::DockingAlgorithm
• reference_method : BALL::NMRStarFile::ShiftReferenceElement
• reference_neighbors_ : BALL::ScoringFunction
• REFERENCE_TEMPERATURE : BALL::MolecularDynamics::Default , BALL::MolecularDynamics::Option
• reference_temperature_ : BALL::MolecularDynamics
• reference_type : BALL::NMRStarFile::ShiftReferenceElement
• reflective_color : BALL::VIEW::Stage::Material
• reflective_intensity : BALL::VIEW::Stage::Material
• reg3D_grid_names_ : BALL::Rescoring3D
• register_ : BALL::VIEW::RegisterHelpSystemMessage
• registered_at_ : BALL::LogStreamNotifier
• registered_modules_ : BALL::ShiftModel
• registered_objects_ : BALL::VIEW::PreferencesEntry
• regression : BALL::QSAR::RegistryEntry
• related_database_entries : BALL::NMRStarFile::MolecularSystem
• relation_type : BALL::NMRStarFile::MolecularSystem::RelatedDB
• relative_ : BALL::VIEW::LightSource
• remark_number : BALL::PDB::RecordREMARK
• remark_records : BALL::PDB::BookKeeping
• remove_correlated : BALL::QSAR::FeatureSelectionConfiguration
• render_mode_ : BALL::VIEW::GLRenderer
• render_mutex_ : BALL::VIEW::RenderSetup
• render_timer_ : BALL::VIEW::MainControl
• renderer : BALL::VIEW::RenderSetup
• renderer_ : BALL::VIEW::RenderToBufferFinishedEvent
• renderer_type_ : BALL::VIEW::RenderSetup
• renderers_ : BALL::VIEW::Scene
• rendering_paused_ : BALL::VIEW::RenderSetup
• rep_ : BALL::VIEW::DisplayProperties , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::UpdateRepresentationThread
• rep_label_ : BALL::VIEW::MainControl
• rep_label_delta_ : BALL::VIEW::MainControl
• rep_label_nr_ : BALL::VIEW::MainControl
• rep_to_buffers_ : BALL::VIEW::GLRenderer
• replacing_entry_code : BALL::PDB::RecordOBSLTE
• reply_ : BALL::SimpleDownloaderHelper::BasicHelper
• representation_ : BALL::RadialDistributionFunction
• representation_to_item_ : BALL::VIEW::GeometricControl
• representations_ : BALL::VIEW::POVRenderer , BALL::VIEW::RepresentationManager , BALL::VIEW::XML3DRenderer
• reps : BALL::VIEW::ExportGeometryDialog
• reps_ : BALL::VIEW::ClippingPlane
• res : BALL::HBondProcessor::ResidueData
• residue : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordCISPEP , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHYDBND::HydrogenAtom , BALL::PDB::RecordHYDBND::HydrogenPartnerAtom , BALL::PDB::RecordLINK::LinkPartner , BALL::PDB::RecordMODRES , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG::PartnerAtom , BALL::PDB::RecordTER , BALL::PDB::Structure::AtomEntry
• residue_data_ : BALL::HBondProcessor
• residue_id : BALL::PDB::AdditionalAtomInfo
• residue_in_current_strand : BALL::PDB::RecordSHEET
• residue_in_previous_strand : BALL::PDB::RecordSHEET
• residue_insertion_code : BALL::PDB::AdditionalAtomInfo
• residue_label : BALL::NMRStarFile::NMRAtomData
• residue_map_ : BALL::PDBFile , BALL::VIEW::ResidueNumberColorProcessor
• residue_name : BALL::PDB::AdditionalAtomInfo , BALL::PDB::RecordSEQRES , BALL::ResidueTorsions::Data
• residue_name_ : BALL::PDBFile
• residue_ptr_to_position_ : BALL::HBondProcessor
• residue_seq_code : BALL::NMRStarFile::NMRAtomData
• residue_sequence : BALL::NMRStarFile::MonomericPolymer
• residue_sequence_number_ : BALL::PDBFile
• residues : BALL::VIEW::AddBackboneModel::ModelPart
• residues_by_index : BALL::NMRStarFile::MonomericPolymer
• residues_to_be_rendered_ : BALL::VIEW::AddBackboneModel
• residues_with_rings_ : BALL::JohnsonBoveyShiftProcessor
• resize_to_parent_ : BALL::VIEW::SDWidget
• resolution_ : BALL::GridAnalysis , BALL::Rescoring3D , BALL::ScoringFunction
• restart_ : BALL::TCPServer
• restart_frequency_ : BALL::ConjugateGradientMinimizer
• result_ : BALL::RombergIntegrator< Function, DataType > , BALL::ScoringFunction , BALL::SimpleDownloaderHelper::HelperThread
• result_data_ : BALL::Result
• result_output_data_ : BALL::Result
• results : BALL::FDPB
• results_ : BALL::VIEW::PyWidget
• return_stack_ : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
• RGB_24 : BALL::VIEW::PixelFormat
• RGB_32 : BALL::VIEW::PixelFormat
• RGB_3_2_2 : BALL::VIEW::PixelFormat
• RGBA_32 : BALL::VIEW::PixelFormat
• RGBF_96 : BALL::VIEW::PixelFormat
• rho_ : BALL::StrangLBFGSMinimizer
• RHO_0 : BALL::GeneralizedBornModel::Default , BALL::GeneralizedBornModel::Option
• ribbon_height_ : BALL::VIEW::AddBackboneModel
• ribbon_mode_ : BALL::VIEW::AddBackboneModel
• ribbon_radius_ : BALL::VIEW::AddCartoonModel
• ribbon_width_ : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
• right_ : BALL::VIEW::GLRenderer
• right_vector_ : BALL::TBox3< T > , BALL::VIEW::Camera
• rij : BALL::MMFF94NonBonded::NonBondedPairData
• rij_ : BALL::MMFF94VDWParameters
• rij_7 : BALL::MMFF94NonBonded::NonBondedPairData
• rij_7_ : BALL::MMFF94VDWParameters
• ring_analyser_ : BALL::SDGenerator
• ring_atoms_ : BALL::HaighMallionShiftProcessor , BALL::VIEW::AtomBondModelBaseProcessor
• ring_connections_ : BALL::SmartsParser
• ring_proc_ : BALL::SMARTSPredicate
• ring_systems_ : BALL::RingAnalyser
• rings_ : BALL::AtomTyper , BALL::JohnsonBoveyShiftProcessor , BALL::Kekuliser , BALL::MMFF94 , BALL::RingAnalyser , BALL::RingPerceptionProcessor , BALL::VIEW::AtomBondModelBaseProcessor
• rings_per_bond_ : BALL::RingAnalyser
• rl_thread_ : BALL::VIEW::MolecularControl
• rms : BALL::Gradient
• RMS_CRITERION : BALL::FDPB::Default , BALL::FDPB::Option
• rmsd_ : BALL::StructureMapper
• RMSD_LEVEL_OF_DETAIL : BALL::PoseClustering::Default , BALL::PoseClustering::Option
• rmsd_level_of_detail_ : BALL::PoseClustering
• RMSD_TYPE : BALL::PoseClustering::Default , BALL::PoseClustering::Option
• rng_ : BALL::GenericGene , BALL::GeneticAlgorithm
• root : BALL::GAFFCESParser
• root_ : BALL::SmartsParser , BALL::TreeWidthImplementation< EditableGraph >::TreeDecompositionBuilder< OriginalGraphType > , BALL::VIEW::AssignBondOrderResultsDialog
• root_atom : BALL::MOL2File::SubstructureStruct
• root_predicate : BALL::GAFFCESParser
• rotamer_library_ : BALL::VIEW::MolecularControl
• rotamer_library_mutex_ : BALL::VIEW::MolecularControl
• rotamer_mapper_ : BALL::VIEW::MolecularControl
• rotamer_menu_ : BALL::VIEW::MolecularControl
• rotamers_ : BALL::ResidueRotamerSet
• rotatable_ligand_bonds_ : BALL::ScoringFunction
• rotation : BALL::PoseClustering::RigidTransformation
• rotation_ : BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• row_ : BALL::VIEW::AtomOverview::ApplyProcessor
• row_axis_ : BALL::CCP4File
• rs_ : BALL::MMFF94VDWParameters , BALL::RSComputer
• rsedge_ : BALL::SESEdge , BALL::SESFace
• rsface_ : BALL::SESFace
• rsvertex_ : BALL::SESFace
• rt_contour_surface_dialog_ : BALL::VIEW::RaytraceableGridController
• rt_material_ : BALL::VIEW::XML3DRenderer
• rule_map_ : BALL::RuleEvaluator
• rule_times : BALL::AtomTyper
• rule_types_ : BALL::MMFF94ChargeProcessor
• rules_ : BALL::AtomTyper
• RUN_PARALLEL : BALL::PoseClustering::Default , BALL::PoseClustering::Option
• run_test : BALL::VIEW::TestFramework
• running_ : BALL::VIEW::PyWidget
• running_plugins_ : BALL::PluginHandler
• runtime_ : BALL::VIEW::TestFramework