- c -

c : BALL::Constant , BALL::PDB::RecordCRYST1::UnitCell , BALL::PDB::Structure::UnitCellInfo , BALL::SortedPosition3
C1 : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
C1_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
C2 : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
C2_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
CAL_PER_JOULE : BALL::Constant
calculated_ : BALL::MMFF94VDWParameters
call_time_map_ : BALL::SMARTSPredicate
caller_ : BALL::SimpleDownloaderHelper::BasicHelper
camera : BALL::VIEW::SetCamera
camera_ : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::Stage
camera_offset_ : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
cancel_ : BALL::VIEW::SnapshotVisualisationDialog
cancel_animation_action_ : BALL::VIEW::Scene
canvas_ : BALL::VIEW::CanvasWidget
canWidget_ : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget
cap_ : BALL::VIEW::ClippingPlane
capping_color_ : BALL::VIEW::ClippingPlane
carbonyl_influences_amide_field_ : BALL::EFShiftProcessor
care_for_SS_ : BALL::VIEW::AddBackboneModel
cart2frac_ : BALL::CrystalInfo
category : BALL::CIFFile::SaveFrame , BALL::ParameterDescription
cation : BALL::MMFF94AtomTyper::AromaticType
cation_atoms_ : BALL::MMFF94AtomTyper
cel_texture_ : BALL::VIEW::GLRenderer
cell_dimension_ : BALL::CCP4File
cell_dimensions_ : BALL::CrystalInfo
cell_scaling_ : BALL::DSN6File
center : BALL::PoseClustering::ClusterProperties , BALL::StaticLigandFragment
center_ : BALL::GridAnalysis , BALL::RSFace , BALL::VIEW::LabelModel
center_camera_action_ : BALL::VIEW::MolecularControl
center_data : BALL::QSAR::InputConfiguration
center_of_torus_ : BALL::RSEdge
center_processor_ : BALL::CrystalGenerator , BALL::VIEW::LabelModel
center_y : BALL::QSAR::InputConfiguration
central_moments : BALL::Spectrum< DataT, PeakT, PositionT >
ces_parsers_ : BALL::GAFFTypeProcessor
cesstring_ : BALL::GAFFCESParser
chain : BALL::MOL2File::SubstructureStruct , BALL::PDB::Structure::AtomEntry
chain_ : BALL::NMRStarFile::BALLToBMRBMapper
chain_id : BALL::PDB::AdditionalAtomInfo
chain_ID : BALL::PDB::RecordDBREF , BALL::PDB::RecordSEQRES , BALL::PDB::Residue
chain_ID_ : BALL::PDBFile
chain_residue_names : BALL::PDB::Structure
chainname_ : BALL::Peptides::PeptideBuilder
chains_ : BALL::SDGenerator
change_charge_ : BALL::VIEW::EditMode
changed_color_processor_ : BALL::VIEW::Representation
changed_selection_color_ : BALL::VIEW::DisplayProperties
char_count : BALL::ExpressionParser::State , BALL::SmartsParser::State , BALL::SmilesParser::State
CHARACTER_CLASS__ASCII_ALPHA : BALL::String
CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
CHARACTER_CLASS__ASCII_FLOAT : BALL::String
CHARACTER_CLASS__ASCII_LOWER : BALL::String
CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
CHARACTER_CLASS__ASCII_UPPER : BALL::String
CHARACTER_CLASS__QUOTES : BALL::String
CHARACTER_CLASS__WHITESPACE : BALL::String
charge : BALL::MOL2File::AtomStruct , BALL::MOLFile::AtomStruct , BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordHETATM , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ
charge_ : BALL::Atom
CHARGE_DISTRIBUTION : BALL::FDPB::Default , BALL::FDPB::Option
charge_factor_ : BALL::EFShiftProcessor
charge_map_ : BALL::EFShiftProcessor
charge_menu_ : BALL::VIEW::EditMode
charge_processor_ : BALL::MMFF94 , BALL::VIEW::FDPBDialog
charge_rule_processor_ : BALL::VIEW::FDPBDialog
charge_type : BALL::MOL2File::MoleculeStruct
charges_ : BALL::ElectrostaticPotentialCalculator , BALL::HMOFile , BALL::Templates
charmm_extra_block_A_ : BALL::DCDFile
charmm_extra_block_B_ : BALL::DCDFile
CHECK_AFTER_ITERATIONS : BALL::FDPB::Default , BALL::FDPB::Option
check_applicability_ : BALL::Rescoring
check_duplicate_keys_ : BALL::INIFile
checkable_ : BALL::VIEW::GenericControl
chemical_environment : BALL::GAFFTypeProcessor::TypeDefinition
chemical_formula : BALL::PDB::RecordFORMUL
chemical_name : BALL::PDB::RecordHETNAM
chemical_units : BALL::NMRStarFile::MolecularSystem
chi1 : BALL::Rotamer
chi2 : BALL::Rotamer
chi3 : BALL::Rotamer
chi4 : BALL::Rotamer
children : BALL::ExpressionParser::SyntaxTree , BALL::GAFFCESParser::CESPredicate
children_ : BALL::ExpressionTree
chiral : BALL::MOLFile::CountsStruct
chiral_class_value : BALL::SmartsParser::SPAtom::PropertyValue
chirality_ : BALL::SmilesParser::SPAtom
CHOOSE_MODEL : BALL::PDBFile::Default , BALL::PDBFile::Option
CHPI : BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Default , BALL::SLICKScore::Option
CHX_ANGLE_LOWER : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option
ci_ptr_ : BALL::CrystalGenerator
circle0_ : BALL::RSEdge
circle1_ : BALL::RSEdge
circle_ : BALL::SASEdge , BALL::SESEdge
CLASH_FACTOR : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
class_ : BALL::VIEW::PyWidget
class_names_ : BALL::QSAR::QSARData
classes_to_files_ : BALL::VIEW::HelpViewer
classification : BALL::PDB::RecordHEADER
CLAVERIE_FILENAME : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
clear_animation_action_ : BALL::VIEW::Scene
clear_selection_action_ : BALL::VIEW::MainControl
clipboard_id_ : BALL::VIEW::MolecularControl
clipping_plane_ : BALL::VIEW::ClippingDialog
clipping_plane_context_menu_ : BALL::VIEW::GeometricControl
clipping_planes_ : BALL::VIEW::POVRenderer , BALL::VIEW::RepresentationManager , BALL::VIEW::XML3DRenderer
CLUSTER_METHOD : BALL::PoseClustering::Default , BALL::PoseClustering::Option
cluster_representatives_ : BALL::PoseClustering
cluster_scores_ : BALL::PoseClustering
cluster_tree_ : BALL::PoseClustering , BALL::PoseClustering::ClusterTreeNodeComparator , BALL::PoseClustering::ClusterTreeWriter_
clusters_ : BALL::PoseClustering
cm_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap > , BALL::VIEW::ColorByGridProcessor
code_ : BALL::PDBFile
coefficient_ : BALL::ScoringComponent
coefficients_ : BALL::PiecewiseFunction
col_axis_ : BALL::CCP4File
col_buffer_ : BALL::LineBasedFile
color_ : BALL::VIEW::LabelModel , BALL::VIEW::LightSource , BALL::VIEW::MeshBuffer
color_index_ : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
color_map_ : BALL::VIEW::ElementColorProcessor , BALL::VIEW::POVRenderer , BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::XML3DRenderer
color_menu_ : BALL::VIEW::MolecularControl
color_number_ : BALL::VIEW::ColorMap
color_processor_ : BALL::VIEW::Representation
color_strings_ : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
coloring_method_ : BALL::VIEW::Representation
coloring_settings_ : BALL::VIEW::DisplayProperties
coloring_update_enabled_ : BALL::VIEW::Representation
colors : BALL::VIEW::MultiColorExtension
colors_ : BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::PositionColorProcessor
column_names_ : BALL::QSAR::QSARData
com_ : BALL::PoseClustering
combine_operation_ : BALL::GridBasedScoring
combiner_ : BALL::FPTBondOrderStrategy
combo_box_ : BALL::VIEW::PyWidget
comm_size_ : BALL::MPISupport
comment : BALL::MOL2File::MoleculeStruct , BALL::MOL2File::SetStruct , BALL::MOL2File::SubstructureStruct , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordHELIX , BALL::PDB::RecordMODRES , BALL::PDB::RecordSEQADV , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT , BALL::VIEW::Hotkey
comment_format : BALL::VIEW::PythonHighlighter
comment_pattern : BALL::VIEW::PythonHighlighter
comments_ : BALL::HMOFile , BALL::MOL2File
common_name : BALL::NMRStarFile::MonomericPolymer
compare_record_type_format_ : BALL::PDBFile
complement_selection_action_ : BALL::VIEW::MainControl
complementary_bases_ : BALL::VIEW::AddCartoonModel
complete_prefix_ : BALL::VIEW::PyWidget
complex_atoms_ : BALL::PB
component_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
component_description : BALL::PDB::RecordCOMPND
component_grouping_ : BALL::SmartsParser
component_name : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
component_no_ : BALL::SmartsParser , BALL::SmartsParser::SPNode
component_number : BALL::PDB::RecordFORMUL
component_solutions_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
components : BALL::NMRStarFile::Sample
components_ : BALL::ComposedEnergyProcessor , BALL::ConnectedComponentsProcessor , BALL::ForceField , BALL::TreeWidth< UndirectedGraph >
composite_ : BALL::VIEW::BALLThread , BALL::VIEW::CompositeMessage , BALL::VIEW::Dataset
composite_hashmap_ : BALL::VIEW::ServerWidget::BALLViewServer
composite_iterator_ : BALL::CompositeIteratorTraits
composite_manager_ : BALL::VIEW::MainControl
composite_name_ : BALL::VIEW::CompositeMessage
composite_properties_action_ : BALL::VIEW::MolecularControl
composite_to_item_ : BALL::VIEW::MolecularControl
composite_to_position_ : BALL::VIEW::PositionColorProcessor
composites_ : BALL::VIEW::ColorProcessor , BALL::VIEW::Representation
composites_locked_ : BALL::VIEW::MainControl
composites_locked_mutex_ : BALL::VIEW::MainControl
compress_output_ : BALL::GenericMolFile
COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
compute_also_connectivity_ : BALL::AssignBondOrderProcessor
COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
compute_also_non_optimal_solutions_ : BALL::AssignBondOrderProcessor
COMPUTE_AREA : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
compute_shifts_ : BALL::ShiftModel1D , BALL::ShiftModel2D
COMPUTE_SURFACE : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
COMPUTE_SURFACE_MAP : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
COMPUTE_VOLUME : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
computing_data_ : BALL::FPTBondOrderStrategy
concentration_max : BALL::NMRStarFile::Sample::Component
concentration_min : BALL::NMRStarFile::Sample::Component
concentration_value : BALL::NMRStarFile::Sample::Component
condition : BALL::NMRStarFile::NMRAtomDataSet
conect_atoms : BALL::PDB::Structure
conect_records : BALL::PDB::BookKeeping
conf_ids_ : BALL::FlexibleMolecule
config : BALL::FPTBondOrderStrategy::BackTrackingState_
CONFORMATION_SCALE : BALL::ScoringFunction::Default , BALL::ScoringFunction::Option
conformation_scale_ : BALL::ScoringFunction
conformation_set_ : BALL::DockResult , BALL::VIEW::DockingFinishedMessage
conformations : BALL::FlexibleMolecule
connect_to : BALL::FragmentDB::BuildBondsProcessor::Connection
connected_stream_ : BALL::TCPServer
connections : BALL::StaticLigandFragment
connections_ : BALL::FragmentDB::BuildBondsProcessor , BALL::SmilesParser
connectivity : BALL::GAFFTypeProcessor::TypeDefinition
CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
CONST : BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Default , BALL::SLICKScore::Option
const_penalty_ : BALL::ILPBondOrderStrategy
CONSTANT : BALL::UhligCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Option
constant_ : BALL::MutableConstant< DataType >
constants_ : BALL::ParsedFunction< arg >
constraints : BALL::ScoringFunction
consumed_valences : BALL::FPTBondOrderStrategy::DPConfig_
contact_faces_ : BALL::SolventExcludedSurface
container_ : BALL::Enumerator< Container, SiteIterator, Variant > , BALL::VIEW::DockWidget
contex_mutex_ : BALL::VIEW::GLRenderWindow
context_composite_ : BALL::VIEW::MolecularControl
context_item_ : BALL::VIEW::GenericControl , BALL::VIEW::MolecularControl
context_menu_ : BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl
context_menu_actions_ : BALL::VIEW::GeometricControl
context_plane_ : BALL::VIEW::GeometricControl
context_representation_ : BALL::VIEW::GeometricControl
continuation : BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCOMPND , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordTITLE
continuation_number : BALL::PDB::RecordFORMUL
CONTINUED_LINE : BALL::KCFFile
control_ : BALL::VIEW::DatasetController
control_selection_ : BALL::VIEW::MainControl
controller_ : BALL::VIEW::GridVisualizationDialog
controllers_ : BALL::VIEW::DatasetControl
CONV_ITERATIONS : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
CONV_START : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
conv_start_ : BALL::GeneticAlgorithm
CONV_VALUE : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
conventions_ : BALL::Peptides::NameConverter
conversion_table_ : BALL::Peptides::NameConverter
convert_ : BALL::Rescoring
coordinate_transformation_records : BALL::PDB::BookKeeping
copy_id_ : BALL::VIEW::MolecularControl
copy_list_ : BALL::VIEW::MolecularControl
cor_threshold : BALL::QSAR::FeatureSelectionConfiguration
CORD_ : BALL::DCDFile
corr_par_ : BALL::ShiftedLVMMMinimizer
correct_CA_shifts_ : BALL::HaighMallionShiftProcessor
CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::Default , BALL::ShiftedLVMMMinimizer::Option
COULOMB : BALL::FDPB::Boundary
count_items_action_ : BALL::VIEW::MolecularControl
counts_format_ : BALL::MOLFile
covariance_matrix_ : BALL::PoseClustering
Cp_ref : BALL::CharmmEEF1::Values
Cp_ref_ : BALL::CharmmEEF1
crd : BALL::MMFF94AtomType
create : BALL::QSAR::RegistryEntry
create_button_ : BALL::VIEW::DisplayProperties
create_coordinate_system_ : BALL::VIEW::Scene
CREATE_INTERACTION_FILE : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option
CREATE_INTERACTIONS_FILE : BALL::Lipophilic::Default , BALL::Lipophilic::Option
create_methods_ : BALL::Expression , BALL::PersistenceManager
create_mutex_ : BALL::VIEW::UIOperationMode
create_representations_for_new_molecules_ : BALL::VIEW::DisplayProperties
create_XHTML_ : BALL::VIEW::XML3DRenderer
created_temp_filenames_ : BALL::File
createKernel1 : BALL::QSAR::RegistryEntry
createKernel2 : BALL::QSAR::RegistryEntry
creating_representations_ : BALL::VIEW::GeometricControl
crystal_dimension_ : BALL::DSN6File
csv_compound_labels : BALL::QSAR::InputConfiguration
csv_desc_labels : BALL::QSAR::InputConfiguration
csv_file : BALL::QSAR::InputConfiguration
csv_no_response : BALL::QSAR::InputConfiguration
csv_separator : BALL::QSAR::InputConfiguration
curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
current_aps_type : BALL::GAFFCESParser::State
current_aromatic_system_ : BALL::Kekuliser
current_atom : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_ , BALL::GAMESSLogFile
current_atom_ : BALL::VIEW::Scene
current_block_ : BALL::GAMESSDatFile
current_bond_ : BALL::VIEW::Scene
current_chain : BALL::PDB::AdditionalAtomInfo
current_chain_ : BALL::PDBFile
current_coefficient_line : BALL::GAMESSLogFile
current_const_atom_ : BALL::PDBFile
current_const_chain_ : BALL::PDBFile
current_const_protein_ : BALL::PDBFile
current_const_residue_ : BALL::PDBFile
current_datablock_ : BALL::CIFFile
CURRENT_DIRECTORY : BALL::FileSystem
current_energy_ : BALL::EnergyMinimizer
current_grad_ : BALL::EnergyMinimizer
current_image_ : BALL::VIEW::GLOffscreenTarget
current_indent_ : BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
current_item_ : BALL::CIFFile
current_light_ : BALL::VIEW::LightSettings
current_line_ : BALL::VIEW::PyWidget
current_mode_ : BALL::VIEW::InteractionModeManager
current_model_ : BALL::PDBFile
current_molecule_ : BALL::GAFFTypeProcessor
current_parser : BALL::CIFFile::State , BALL::ExpressionParser::State , BALL::GAFFCESParser::State , BALL::GAMESSDatFile::State , BALL::GAMESSLogFile::State , BALL::SmartsParser::State , BALL::SmilesParser::State
current_parser_ : BALL::ExpressionParser , BALL::SmartsParser , BALL::SmilesParser
current_PDB_atom_ : BALL::PDBFile
current_penalty_ : BALL::Kekuliser
current_position_ : BALL::TContourSurface< T >::Cube
current_predicate : BALL::GAFFCESParser
current_protein_ : BALL::PDBFile
current_record_ : BALL::PDBFile
current_record_type_ : BALL::PDBFile
current_reply_ : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
current_residue : BALL::PDB::AdditionalAtomInfo
current_residue_ : BALL::PDBFile , BALL::VIEW::MolecularControl
current_root_predicate : BALL::GAFFCESParser
current_round_ : BALL::GeometricFit
current_saveframe_ : BALL::CIFFile
current_script_ : BALL::VIEW::PyWidget
current_set : BALL::GAMESSLogFile
current_set_ : BALL::PoseClustering
current_snapshot_ : BALL::DCDFile , BALL::SnapShotManager
current_solution_ : BALL::KGreedyBondOrderStrategy
current_sphere_number_ : BALL::VIEW::XML3DRenderer
current_state_ : BALL::FPTBondOrderStrategy::DPBackTracking_
current_temperature_ : BALL::MolecularDynamics
CURRENT_TIME : BALL::MolecularDynamics::Default , BALL::MolecularDynamics::Option
current_time_ : BALL::MolecularDynamics
current_tube_number_ : BALL::VIEW::XML3DRenderer
custom_color_ : BALL::VIEW::DisplayProperties , BALL::VIEW::LabelDialog
custom_model_information_ : BALL::VIEW::Representation
cut_hash_map_ : BALL::TContourSurface< T >
cut_id_ : BALL::VIEW::MolecularControl
cut_off2_ : BALL::EFShiftProcessor , BALL::HaighMallionShiftProcessor
cutlo_ : BALL::EnergyMinimizer
cutPlaneInstances : BALL::VIEW::RTfactRenderer::RTfactData
cutPlaneMeshes : BALL::VIEW::RTfactRenderer::RTfactData
cutPlanes : BALL::VIEW::RTfactRenderer::RTfactData
cutPlaneShader : BALL::VIEW::RTfactRenderer::RTfactData
CX_DISTANCE_UPPER : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option