- p -

• P : BALL::Rotamer
• p : BALL::TCircle3< T > , BALL::TPlane3< T > , BALL::TSphere3< T > , BALL::TLine3< T >
• p_i_ : BALL::ConjugateGradientMinimizer
• p_t_ : BALL::ConjugateGradientMinimizer
• parameters_ : BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters
• PARENT_DIRECTORY : BALL::FileSystem
• pars_ : BALL::Bruker1DFile
• PARSE_INI_FILE : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PARSE_PARTIAL_CHARGES : BALL::PDBFile::PDBFile::Option , BALL::PDBFile::PDBFile::Default
• parse_partial_charges_ : BALL::PDBFile
• parsf1_ : BALL::Bruker2DFile
• PATH_SEPARATOR : BALL::FileSystem
• periodic_boundary : BALL::ForceField
• PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_WATER_FILE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• phi_ : BALL::ResidueRotamerSet
• phi_grid : BALL::FDPB
• pilp : BALL::MMFF94AtomType
• PLANCK : BALL::Constant
• position_data_size : BALL::TRRFile::TRRFile::TRRHeader
• predicate : BALL::ExpressionParser::ExpressionParser::SyntaxTree
• predicate_ : BALL::CompositeIteratorTraits
• pres_size : BALL::TRRFile::TRRFile::TRRHeader
• PRESSURE : BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default
• prev_shift_val_ : BALL::ShiftedLVMMMinimizer
• PRINT_TIMING : BALL::FDPB::FDPB::Option , BALL::FDPB::FDPB::Default
• PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PROBE_RADIUS : BALL::FDPB::FDPB::Option , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Default , BALL::NumericalSAS::NumericalSAS::Option , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default , BALL::NumericalSAS::NumericalSAS::Default , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option , BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Option , BALL::FDPB::FDPB::Default
• PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• prod_ : BALL::DSN6File
• properties_ : BALL::SmartsParser::SmartsParser::SPAtom
• PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
• PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
• PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
• PROPERTY__RING_CURRENT_SHIFT : BALL::JohnsonBoveyShiftProcessor , BALL::HaighMallionShiftProcessor
• PROPERTY__SHIFT : BALL::ShiftModule
• PROTON_MASS : BALL::Constant
• psi_ : BALL::ResidueRotamerSet
• PW_SQUARE_WELL : BALL::BindingPocketProcessor::BindingPocketProcessor::Option