- OBJECT_HEADER :
BALL::XDRPersistenceManager
- OBJECT_TRAILER :
BALL::XDRPersistenceManager
- OFFSET :
BALL::FDPB::FDPB::Option
- old_energy_ :
BALL::EnergyMinimizer
- old_grad_ :
BALL::EnergyMinimizer
- old_gtg_ :
BALL::ConjugateGradientMinimizer
- options : BALL::PDBFile
,
BALL::ElectrostaticPotentialCalculator ,
BALL::Pair6_12InteractionEnergyProcessor ,
BALL::ForceField ,
BALL::Pair6_12RDFIntegrator ,
BALL::PairExpInteractionEnergyProcessor ,
BALL::PeriodicBoundary ,
BALL::PCMCavFreeEnergyProcessor ,
BALL::PierottiCavFreeEnergyProcessor ,
BALL::SnapShotManager , BALL::FDPB
,
BALL::ReissCavFreeEnergyProcessor ,
BALL::MolecularDynamics ,
BALL::UhligCavFreeEnergyProcessor ,
BALL::AssignBondOrderProcessor ,
BALL::EnergyMinimizer ,
BALL::BindingPocketProcessor ,
BALL::BuildBondsProcessor ,
BALL::ParameterSection ,
BALL::ShiftModel ,
BALL::DockingAlgorithm ,
BALL::SDGenerator ,
BALL::GeometricFit ,
BALL::AromaticityProcessor ,
BALL::HybridisationProcessor
- options_ :
BALL::DockResult::DockResult::Scoring_
- origin_ :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType > ,
BALL::DSN6File , BALL::TFFT1D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- original_coordinates_ :
BALL::ResidueRotamerSet
- OVERWRITE_BOND_ORDERS :
BALL::AromaticityProcessor::AromaticityProcessor::Option
- OVERWRITE_CHARGES :
BALL::CharmmFF::CharmmFF::Default ,
BALL::CharmmFF::CharmmFF::Option ,
BALL::MMFF94::MMFF94::Default ,
BALL::AmberFF::AmberFF::Default ,
BALL::AmberFF::AmberFF::Option ,
BALL::MMFF94::MMFF94::Option
- OVERWRITE_DOUBLE_BOND_ORDERS :
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
- OVERWRITE_SELECTED_BONDS :
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
- OVERWRITE_SINGLE_BOND_ORDERS :
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
- OVERWRITE_TRIPLE_BOND_ORDERS :
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
- OVERWRITE_TYPENAMES :
BALL::MMFF94::MMFF94::Option ,
BALL::CharmmFF::CharmmFF::Default ,
BALL::MMFF94::MMFF94::Default ,
BALL::CharmmFF::CharmmFF::Option ,
BALL::AmberFF::AmberFF::Option ,
BALL::AmberFF::AmberFF::Default
Generated on Thu Aug 6 18:30:05 2009 for BALL by
1.5.8