Here is a list of all class members with links to the classes they belong to:

- p -

• P : BALL::Element , BALL::Rotamer
• p : BALL::TLine3< T > , BALL::TPlane3< T > , BALL::TCircle3< T > , BALL::TSphere3< T > , BALL::TriangulatedSphere::Face
• P_ : BALL::RingPerceptionProcessor
• p_ : BALL::QSAR::LibsvmModel
• p_i_ : BALL::ConjugateGradientMinimizer
• p_t_ : BALL::ConjugateGradientMinimizer
• Pa : BALL::Element
• paintEngine() : BALL::VIEW::GLOffscreenTarget
• paintEvent() : BALL::VIEW::Scene , BALL::VIEW::SDWidget , BALL::VIEW::TextEditorWidget::LineNumbers , BALL::VIEW::GLRenderWindow , BALL::VIEW::ColorButton
• paintGL() : BALL::VIEW::Scene
• Pair6_12InteractionEnergyProcessor() : BALL::Pair6_12InteractionEnergyProcessor
• Pair6_12RDFIntegrator() : BALL::Pair6_12RDFIntegrator
• pair_charges_ : BALL::GeneralizedBornModel
• pair_distances_ : BALL::GeneralizedBornModel
• pair_items : BALL::CIFFile::SaveFrame
• pair_list_ : BALL::GeneralizedBornModel
• PairExpInteractionEnergyProcessor() : BALL::PairExpInteractionEnergyProcessor
• PairExpRDFIntegrator() : BALL::PairExpRDFIntegrator
• PairVector : BALL::ForceField , BALL::AtomBijection , BALL::UCK
• PALLADIUM : BALL::Element
• par1 : BALL::QSAR::Kernel
• par2 : BALL::QSAR::Kernel
• param : BALL::QSAR::LibsvmModel::svm_model
• parameterDefaults : BALL::QSAR::RegistryEntry
• parameterNames : BALL::QSAR::RegistryEntry
• Parameters() : BALL::Parameters
• parameters_ : BALL::ForceField , BALL::MMFF94OutOfPlaneBend , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::MMFF94Torsion , BALL::ShiftModel , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModule , BALL::QSAR::LibsvmModel , BALL::ClaverieParameter
• parameters_by_row_ : BALL::MMFF94StretchBendParameters
• parameters_initialized_ : BALL::AmberFF , BALL::CharmmFF , BALL::MMFF94
• ParameterSection() : BALL::ParameterSection
• parent : BALL::HashGridBox3< Item > , BALL::GAFFCESParser::CESPredicate
• parent_ : BALL::Composite , BALL::NMRStarFile::NMRAtomDataSet , BALL::ResourceEntry , BALL::ConnectedToPredicate::CTPNode , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::VIEW::AtomOverview , BALL::VIEW::BondProperties , BALL::VIEW::ConnectionObject
• PARENT_DIRECTORY : BALL::FileSystem
• parent_widget_ : BALL::VIEW::ServerWidget::BALLViewServer
• parents_ : BALL::RingPerceptionProcessor
• parity : BALL::MOLFile::AtomStruct
• pars_ : BALL::Bruker1DFile
• parse() : BALL::ExpressionParser , BALL::GAFFCESParser , BALL::SmartsParser , BALL::SmilesParser
• parse_() : BALL::ConnectedToPredicate , BALL::BindingPocketProcessor
• PARSE_INI_FILE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• PARSE_PARTIAL_CHARGES : BALL::PDBFile::Option , BALL::PDBFile::Default
• parse_partial_charges_ : BALL::PDBFile
• parseAtoms_() : BALL::FragmentDB
• parseAtomtypeTableFile_() : BALL::GAFFTypeProcessor
• parseBonds_() : BALL::FragmentDB
• parseColumnFormat() : BALL::LineBasedFile
• parseDataFile_() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• parseDelete_() : BALL::FragmentDB
• ParsedFunction() : BALL::ParsedFunction< arg >
• ParsedFunctionDialog() : BALL::VIEW::ParsedFunctionDialog
• ParseError() : BALL::Exception::ParseError
• parseLine() : BALL::PDBFile
• parseLine_() : BALL::VIEW::PyWidget
• parseProperties_() : BALL::FragmentDB
• parser_ : BALL::GAFFCESParser::CESPredicate
• parseRecordANISOU() : BALL::PDBFile
• parseRecordATOM() : BALL::PDBFile
• parseRecordAUTHOR() : BALL::PDBFile
• parseRecordCAVEAT() : BALL::PDBFile
• parseRecordCISPEP() : BALL::PDBFile
• parseRecordCOMPND() : BALL::PDBFile
• parseRecordCONECT() : BALL::PDBFile
• parseRecordCRYST1() : BALL::PDBFile
• parseRecordDBREF() : BALL::PDBFile
• parseRecordEND() : BALL::PDBFile
• parseRecordENDMDL() : BALL::PDBFile
• parseRecordEXPDTA() : BALL::PDBFile
• parseRecordFORMUL() : BALL::PDBFile
• parseRecordFTNOTE() : BALL::PDBFile
• parseRecordHEADER() : BALL::PDBFile
• parseRecordHELIX() : BALL::PDBFile
• parseRecordHET() : BALL::PDBFile
• parseRecordHETATM() : BALL::PDBFile
• parseRecordHETNAM() : BALL::PDBFile
• parseRecordHETSYN() : BALL::PDBFile
• parseRecordHYDBND() : BALL::PDBFile
• parseRecordJRNL() : BALL::PDBFile
• parseRecordKEYWDS() : BALL::PDBFile
• parseRecordLINK() : BALL::PDBFile
• parseRecordMASTER() : BALL::PDBFile
• parseRecordMODEL() : BALL::PDBFile
• parseRecordMODRES() : BALL::PDBFile
• parseRecordMTRIX1() : BALL::PDBFile
• parseRecordMTRIX2() : BALL::PDBFile
• parseRecordMTRIX3() : BALL::PDBFile
• parseRecordOBSLTE() : BALL::PDBFile
• parseRecordORIGX1() : BALL::PDBFile
• parseRecordORIGX2() : BALL::PDBFile
• parseRecordORIGX3() : BALL::PDBFile
• parseRecordREMARK() : BALL::PDBFile
• parseRecordREVDAT() : BALL::PDBFile
• parseRecordSCALE1() : BALL::PDBFile
• parseRecordSCALE2() : BALL::PDBFile
• parseRecordSCALE3() : BALL::PDBFile
• parseRecordSEQADV() : BALL::PDBFile
• parseRecordSEQRES() : BALL::PDBFile
• parseRecordSHEET() : BALL::PDBFile
• parseRecordSIGATM() : BALL::PDBFile
• parseRecordSIGUIJ() : BALL::PDBFile
• parseRecordSITE() : BALL::PDBFile
• parseRecordSLTBRG() : BALL::PDBFile
• parseRecordSOURCE() : BALL::PDBFile
• parseRecordSPRSDE() : BALL::PDBFile
• parseRecordSSBOND() : BALL::PDBFile
• parseRecordTER() : BALL::PDBFile
• parseRecordTITLE() : BALL::PDBFile
• parseRecordTURN() : BALL::PDBFile
• parseRecordTVECT() : BALL::PDBFile
• parseRename_() : BALL::FragmentDB
• parsf1_ : BALL::Bruker2DFile
• parsf2_ : BALL::Bruker2DFile
• partial_charge : BALL::PDB::RecordATOM
• PartialBondOrderAssignment : BALL::AssignBondOrderProcessor , BALL::PartialBondOrderAssignment
• PartialChargeBase() : BALL::PartialChargeBase
• PartialChargeProcessor() : BALL::PartialChargeProcessor
• partitionFreeSingularEdge() : BALL::SESTriangulator
• partitionInputData() : BALL::QSAR::QSARData
• partitionNonFreeSingularEdge() : BALL::SESTriangulator
• partitionOfCircle() : BALL::SESTriangulator
• partitionSingularEdge() : BALL::SESTriangulator
• partitionSingularEdges() : BALL::SESTriangulator
• partner1Chosen() : BALL::VIEW::DockDialog
• partner2Chosen() : BALL::VIEW::DockDialog
• partner_atom : BALL::PDB::RecordSLTBRG
• partner_id : BALL::Kekuliser::AtomInfo
• partner_residue : BALL::PDB::RecordSSBOND
• partner_type_to_htype_ : BALL::MMFF94AtomTyper
• past_the_end_ : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• PASTE : BALL::VIEW::MolecularControl
• paste() : BALL::VIEW::MolecularControl , BALL::VIEW::PyWidget
• paste_action_ : BALL::VIEW::MolecularControl
• paste_id_ : BALL::VIEW::MolecularControl
• pasteAllowedFor_() : BALL::VIEW::MolecularControl
• path() : BALL::FileSystem
• Path() : BALL::Path
• path_ : BALL::Path , BALL::SimpleDownloaderHelper::HelperThread
• path_array_ : BALL::Path
• path_array_valid_ : BALL::Path
• PATH_SEPARATOR : BALL::FileSystem
• PathStrings : BALL::PyInterpreter
• pattern_ : BALL::RegularExpression
• pause() : BALL::DockingAlgorithm
• pause_ : BALL::DockingAlgorithm
• pauseClicked() : BALL::VIEW::DockProgressDialog
• pauseRendering() : BALL::VIEW::RenderSetup
• Pb : BALL::Element
• pbcis_ : BALL::MMFF94ESParameters
• pbuf_ : BALL::LogStreamBuf
• pcm_ : BALL::NonpolarSolvation
• PCMCavFreeEnergyProcessor() : BALL::PCMCavFreeEnergyProcessor
• pcount : BALL::TriangulatedSphere::Face
• PCRModel() : BALL::QSAR::PCRModel
• Pd : BALL::Element
• PDB_atom_map_ : BALL::PDBFile
• PDB_FILE : BALL::VIEW::MolecularFileDialog
• pdb_id : BALL::PDB::AdditionalAtomInfo
• PDBAtom() : BALL::PDBAtom
• PDBAtomIteratorTraits() : BALL::PDBAtomIteratorTraits
• PDBAtomMap : BALL::PDBFile
• pdbDownloadChecked() : BALL::VIEW::DownloadElectronDensity
• PDBFile() : BALL::PDBFile
• PDBInfo() : BALL::PDBInfo
• PDBInfoEditorWidget : BALL::VIEW::PDBInfoEditorWidget::EditorPDBInfoDialog , BALL::VIEW::PDBInfoEditorWidget
• PDBRecords() : BALL::PDBRecords
• Peak() : BALL::Peak< PositionType >
• Peak_() : BALL::GeometricFit::Peak_
• peak_list_ : BALL::Experiment< PeakListType >
• peak_set_ : BALL::GeometricFit
• PeakList() : BALL::PeakList< PT >
• peaklist_ : BALL::CreateSpectrumProcessor
• peaks_ : BALL::ShiftModel1D , BALL::ShiftModel2D
• PeakType : BALL::Experiment< PeakListType > , BALL::PeakList< PT > , BALL::Spectrum< DataT, PeakT, PositionT >
• peeling_order_ : BALL::RingAnalyser
• peelNextRing_() : BALL::RingAnalyser
• peelRings_() : BALL::RingAnalyser
• penalties_ : BALL::AssignBondOrderProcessor , BALL::FPTBondOrderStrategy
• Penalty : BALL::FPTBondOrderStrategy
• penalty : BALL::FPTBondOrderStrategy::Assignment_
• PENALTY_MOBILE : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• PENALTY_STATIC : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• penaltyOfNextSolution() : BALL::FPTBondOrderStrategy::DPBackTracking_ , BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• pentakisDodecaeder() : BALL::TriangulatedSphere
• peptide_() : BALL::Peptides::PeptideBuilder
• PeptideBuilder() : BALL::Peptides::PeptideBuilder
• PeptideCapProcessor() : BALL::PeptideCapProcessor
• PeptideDialog() : BALL::VIEW::PeptideDialog
• performRequiredUpdates_() : BALL::ForceField
• Period : BALL::Element
• period_ : BALL::Element
• periodic_boundary : BALL::ForceField
• PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PERIODIC_WATER_FILE : BALL::PeriodicBoundary::Option , BALL::PeriodicBoundary::Default
• PeriodicBoundary() : BALL::PeriodicBoundary
• periodicBoundaryClicked() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog
• permutation : BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound >::QuickBBState
• permuteComponentSigns_() : BALL::PolarSolvation
• PersistenceManager() : BALL::PersistenceManager
• PersistentObject() : BALL::PersistentObject
• persistentRead() : BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::PDBInfo , BALL::PDBRecords , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T > , BALL::CrystalInfo
• persistentWrite() : BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::PDBInfo , BALL::PDBRecords , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T > , BALL::CrystalInfo
• PERSPECTIVE : BALL::VIEW::Camera
• phase : BALL::AmberTorsion::SingleAmberTorsion , BALL::CharmmTorsion::SingleCharmmTorsion , BALL::CosineTorsion::SingleValues , BALL::QuadraticImproperTorsion::Values , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• phe_pressed() : BALL::VIEW::PeptideDialog
• phi_ : BALL::GeometricFit::RotationAngles_ , BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet
• phi_grid : BALL::FDPB
• PHI_MAX : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• PHI_MIN : BALL::GeometricFit::Option , BALL::GeometricFit::Default
• phis_ : BALL::MMFF94ESParameters
• PHOSPHORUS : BALL::Element
• PI : BALL::Constant
• pick_select_ : BALL::VIEW::Scene
• PICKING__MODE : BALL::VIEW::Scene
• picking_action_ : BALL::VIEW::Scene
• picking_mode_ : BALL::VIEW::GLRenderer
• pickingMode_() : BALL::VIEW::Scene
• pickObjects() : BALL::VIEW::RenderSetup
• pickObjects1() : BALL::VIEW::GLRenderer
• pickObjects2() : BALL::VIEW::GLRenderer
• pickParent_() : BALL::VIEW::Scene
• PIECEWISE_POLYNOMIAL : BALL::RDFSection
• PiecewiseFunction() : BALL::PiecewiseFunction
• PiecewisePolynomial() : BALL::PiecewisePolynomial
• PierottiCavFreeEnergyProcessor() : BALL::PierottiCavFreeEnergyProcessor
• pilp : BALL::MMFF94AtomType
• pitch : BALL::VIEW::FrameBufferFormat
• pixel_buffer_ : BALL::VIEW::GLOffscreenTarget
• pixelFormat : BALL::VIEW::FrameBufferFormat
• PixelFormat() : BALL::VIEW::PixelFormat
• pixmap_ : BALL::VIEW::CanvasWidget::PixmapItem
• PixmapItem() : BALL::VIEW::CanvasWidget::PixmapItem
• placeSubstituent_() : BALL::SDGenerator
• PLANAR_FRAMEBUFFER : BALL::VIEW::PixelFormat
• planarAtom_() : BALL::GAFFTypeProcessor
• planBackward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• planCalculated_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• PLANCK : BALL::Constant
• PLANE : BALL::VIEW::GridVisualisation
• plane_ : BALL::VIEW::SetClippingPlane
• plane_to_item_ : BALL::VIEW::GeometricControl
• PlaneMap : BALL::MMFF94PlaneParameters
• planForward_ : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• PLATINUM : BALL::Element
• plot() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget , BALL::VIEW::SDWidget
• PLSModel() : BALL::QSAR::PLSModel
• pluginChanged() : BALL::VIEW::PluginDialog
• PluginDialog() : BALL::VIEW::PluginDialog
• PluginManager() : BALL::PluginManager
• PluginModel() : BALL::VIEW::PluginModel
• pluginsLoaded() : BALL::VIEW::PluginModel
• PLUMBUM : BALL::Element
• plus_ : BALL::DSN6File
• PLUTONIUM : BALL::Element
• Pm : BALL::Element
• pm_ : BALL::Client , BALL::ObjectCreator
• Po : BALL::Element
• Point() : BALL::VIEW::Point
• point : BALL::RSComputer::ProbePosition , BALL::SESSingularityCleaner::ProbeIntersection
• point_ : BALL::TBox3< T > , BALL::SASVertex , BALL::SESVertex , BALL::TrianglePoint , BALL::SESTriangulator , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
• point_ptr_ : BALL::VIEW::Sphere
• pointer : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::VIEW::CompositeManager
• pointer_list_ : BALL::PersistenceManager
• pointer_map_ : BALL::PersistenceManager
• PointerList : BALL::PersistenceManager
• PointerMap : BALL::PersistenceManager
• PointerType : BALL::HashMap< Key, T > , BALL::HashSet< Key > , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::PyColorRGBAVector , BALL::PyCompositeList , BALL::PyDatasetVector , BALL::PyIndexList
• PointIterator : BALL::TriangulatedSurface
• points : BALL::VIEW::GridVisualisation
• points_ : BALL::TriangulatedSurface
• PointType : BALL::TContourLine< T > , BALL::TContourSurface< T >
• PointVector : BALL::RMSDMinimizer
• POLAK_RIBIERE : BALL::ConjugateGradientMinimizer
• POLAR : BALL::SLICKScore::Option , BALL::SLICKEnergy::Option , BALL::SLICKEnergy::Default , BALL::SLICKScore::Default , BALL::FresnoTypes
• POLAR_AVG : BALL::PolarSolvation::Default , BALL::PolarSolvation::Option
• POLAR_CHARGE_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• polar_color_ : BALL::VIEW::ResidueTypeColorProcessor
• POLAR_FOCUS_GRID_AROUND_LIGAND : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_GB : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_METHOD : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_OVERWRITE_CHARGES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_OVERWRITE_RADII : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• POLAR_RADIUS_RULES : BALL::PolarSolvation::Option , BALL::PolarSolvation::Default
• PolarSolvation() : BALL::PolarSolvation
• PolarVdWSurface() : BALL::PolarVdWSurface
• POLONIUM : BALL::Element
• polymer_class : BALL::NMRStarFile::MonomericPolymer
• pool_ : BALL::SmartsMatcher
• pop() : BALL::ResourceEntry::IteratorTraits_
• pop_back() : BALL::PDBRecords
• popRepresentationToUpdate() : BALL::VIEW::RepresentationManager
• PopUpID : BALL::VIEW::MainControl
• port_ : BALL::TCPServer , BALL::VIEW::ServerPreferences , BALL::VIEW::ServerWidget::BALLViewServer , BALL::Client , BALL::VIEW::ServerWidget
• pos_ : BALL::SmartsMatcher::RecStruct_
• pos_C : BALL::HBondProcessor::ResidueData
• pos_H : BALL::HBondProcessor::ResidueData
• pos_N : BALL::HBondProcessor::ResidueData
• pos_O : BALL::HBondProcessor::ResidueData
• posbridges_ : BALL::SecondaryStructureProcessor
• position : BALL::MOL2File::AtomStruct , BALL::BindingPocketProcessor::Sphere_
• Position : BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::PeakList< PT > , BALL::Peak< PositionType > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional >
• position : BALL::MOLFile::AtomStruct
• position_ : BALL::Composite::CompositeIteratorTraits , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::INIFile::IteratorTraits_ , BALL::ResourceEntry::IteratorTraits_ , BALL::Atom::BondIteratorTraits , BALL::ColumnIteratorTraits< valuetype, mtraits > , BALL::DiagonalIteratorTraits< valuetype, mtraits > , BALL::ElementColumnIteratorTraits< valuetype, mtraits > , BALL::RowIteratorTraits< valuetype, mtraits > , BALL::VectorIteratorTraits< valuetype > , BALL::Peak< PositionType > , BALL::VIEW::LightSource , BALL::ElementRowIteratorTraits< valuetype, mtraits > , BALL::Atom , BALL::HashSet< Key >::IteratorTraits
• position_data_size : BALL::TRRFile::TRRHeader
• POSITION_VALUE_NA : BALL::NMRStarFile
• POSITIONAL : BALL::VIEW::LightSource
• PositionColorProcessor() : BALL::VIEW::PositionColorProcessor
• PositionType : BALL::Spectrum< DataT, PeakT, PositionT >
• positionTypeChanged() : BALL::VIEW::LightSettings
• PositivePolarVdWSurface() : BALL::PositivePolarVdWSurface
• PositiveVdWSurface() : BALL::PositiveVdWSurface
• possible_buried_polar_interactions_ : BALL::BuriedPolar
• possible_hydrogen_bonds_ : BALL::HydrogenBond
• possible_interactions_ : BALL::AromaticRingStacking , BALL::CHPI
• possible_lipophilic_interactions_ : BALL::Lipophilic
• possible_metal_interactions_ : BALL::ChemScoreMetal
• Postcondition() : BALL::Exception::Postcondition
• postorder() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor > , BALL::FPTBondOrderStrategy::DPBackTracking_
• PostOrderFolding() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
• postProcessAtomTypes_() : BALL::GAFFTypeProcessor
• postprocessHelices_() : BALL::PDBFile
• postprocessing_() : BALL::EFShiftProcessor , BALL::HaighMallionShiftProcessor , BALL::HBondShiftProcessor , BALL::RandomCoilShiftProcessor , BALL::EmpiricalHSShiftProcessor
• postprocessRandomCoils_() : BALL::PDBFile
• postprocessSheetsTurns_() : BALL::PDBFile
• postprocessSSBonds_() : BALL::PDBFile
• POTASSIUM : BALL::Element
• Potential1210() : BALL::Potential1210
• potential_energy_ : BALL::SnapShot
• potential_grid_ : BALL::VIEW::FieldLineCreator
• pov_nr_ : BALL::VIEW::Scene
• POVColorRGBA() : BALL::VIEW::POVRenderer
• POVFinish() : BALL::VIEW::POVRenderer
• POVRenderer() : BALL::VIEW::POVRenderer
• POVVector3() : BALL::VIEW::POVRenderer
• PQ_Entry_ : BALL::AssignBondOrderProcessor
• Pr : BALL::Element
• PRASEODYMIUM : BALL::Element
• pre_translation_a_ : BALL::GeometricFit
• pre_translation_b_ : BALL::GeometricFit
• preassignPenaltyClasses_() : BALL::AssignBondOrderProcessor
• PreciseTime() : BALL::PreciseTime
• precision_ : BALL::TRRFile
• precisionBoxChanged() : BALL::VIEW::DisplayProperties
• precisionSliderChanged() : BALL::VIEW::DisplayProperties
• precomputeAtomProperties_() : BALL::GAFFTypeProcessor
• precomputeBondLengthPenalties_() : BALL::AssignBondOrderProcessor
• precomputeBondProperties_() : BALL::GAFFTypeProcessor
• preComputeBonds_() : BALL::HBondProcessor
• Precondition() : BALL::Exception::Precondition
• predecessor() : BALL::RingAnalyser::Ring
• predicate : BALL::ExpressionParser::SyntaxTree
• predicate_ : BALL::ExpressionTree , BALL::CompositeIteratorTraits , BALL::BaseFilterIterator< Predicate, IteratorBase >
• predict() : BALL::QSAR::ALLModel , BALL::QSAR::FitModel , BALL::QSAR::GPModel , BALL::QSAR::LDAModel , BALL::QSAR::LinearModel , BALL::QSAR::LogitModel , BALL::QSAR::NBModel , BALL::QSAR::SNBModel , BALL::QSAR::Model , BALL::QSAR::KernelModel
• PREDICTION_METHOD : BALL::HBondProcessor::Option , BALL::HBondProcessor::Default
• PredictionConfiguration() : BALL::QSAR::PredictionConfiguration
• predQualFetcher_ : BALL::QSAR::RegressionValidation
• Preferences() : BALL::VIEW::Preferences
• preferences_ : BALL::VIEW::DisplayProperties , BALL::VIEW::PyWidget
• preferences_action_ : BALL::VIEW::MainControl
• preferences_dialog_ : BALL::VIEW::MainControl
• preferences_file_ : BALL::VIEW::MainControl
• PreferencesEntry() : BALL::VIEW::PreferencesEntry
• PreferencesObject() : BALL::PreferencesObject
• prefix : BALL::LogStreamBuf::StreamStruct
• prefix_ : BALL::VIEW::DownloadPDBFile , BALL::RuleEvaluator , BALL::VIEW::DemoTutorialDialog
• preorder() : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor > , BALL::FPTBondOrderStrategy::DPBackTracking_
• prepare_() : BALL::SDGenerator
• prepareBufferedRendering() : BALL::VIEW::BufferedRenderer
• prepareGridTextures() : BALL::VIEW::RenderSetup , BALL::VIEW::Scene
• prepareRendering() : BALL::VIEW::RenderWindow< taPixelDatatype > , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::RenderTarget
• prepareUpscaling() : BALL::VIEW::GLOffscreenTarget
• prepend() : BALL::Chain , BALL::SecondaryStructure , BALL::Nucleotide , BALL::Molecule , BALL::Chain , BALL::Nucleotide , BALL::SecondaryStructure , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Residue , BALL::SecondaryStructure , BALL::AtomContainer , BALL::Residue , BALL::Chain , BALL::System
• prependChild() : BALL::Composite
• preProcessing() : BALL::SESComputer , BALL::RSComputer , BALL::SolventAccessibleSurface , BALL::SESTriangulator
• pres_size : BALL::TRRFile::TRRHeader
• PRESSURE : BALL::ReissCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default
• prev_shift_val_ : BALL::ShiftedLVMMMinimizer
• preview_ : BALL::VIEW::Scene
• previous_ : BALL::Composite
• primitive_manager_ : BALL::VIEW::MainControl
• PrincipalMomentOfInertia() : BALL::PrincipalMomentOfInertia
• PrincipalMomentOfInertiaX() : BALL::PrincipalMomentOfInertiaX
• PrincipalMomentOfInertiaY() : BALL::PrincipalMomentOfInertiaY
• PrincipalMomentOfInertiaZ() : BALL::PrincipalMomentOfInertiaZ
• print() : BALL::VIEW::PixelFormat
• print_expected : BALL::QSAR::PredictionConfiguration
• PRINT_TIMING : BALL::FDPB::Default , BALL::FDPB::Option
• printAPS() : BALL::GAFFCESParser::APSMatcher
• printCursorPosition_() : BALL::VIEW::PyWidget
• printEffectors_() : BALL::HaighMallionShiftProcessor , BALL::EFShiftProcessor , BALL::HBondShiftProcessor
• printEnergy() : BALL::EnergyMinimizer
• printMatrix() : BALL::QSAR::QSARData
• printParameters_() : BALL::EmpiricalHSShiftProcessor , BALL::EFShiftProcessor , BALL::HaighMallionShiftProcessor , BALL::HBondShiftProcessor
• printScene() : BALL::VIEW::Scene
• printSelectionInfos() : BALL::VIEW::MainControl
• printTargets_() : BALL::EFShiftProcessor , BALL::EmpiricalHSShiftProcessor , BALL::HBondShiftProcessor , BALL::HaighMallionShiftProcessor
• printUCK() : BALL::UCK
• priority_queue_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• pro_pressed() : BALL::VIEW::PeptideDialog
• probA : BALL::QSAR::LibsvmModel::svm_model
• probabilities_ : BALL::QSAR::NBModel
• probB : BALL::QSAR::LibsvmModel::svm_model
• probe_intersections_ : BALL::SESSingularityCleaner
• PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• probe_positions_ : BALL::RSComputer
• PROBE_RADIUS : BALL::FDPB::Default , BALL::NonpolarSolvation::Default , BALL::PCMCavFreeEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Default , BALL::NumericalSAS::Default , BALL::NumericalSAS::Option , BALL::FDPB::Option , BALL::UhligCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::NonpolarSolvation::Option
• probe_radius_ : BALL::VIEW::AddSurfaceModel , BALL::NonpolarSolvation , BALL::ReducedSurface , BALL::SurfaceProcessor
• PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• probe_weight : BALL::BindingPocketProcessor::Sphere_
• probeIntersection() : BALL::SESSingularityCleaner
• probeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• ProbeStatus : BALL::RSComputer
• proceed() : BALL::DockingAlgorithm
• processEvent_() : BALL::VIEW::TestFramework
• processEvents() : BALL::VIEW::MainControl
• processing_message_queue_ : BALL::VIEW::ConnectionObject
• processMoveModeMouseEvents_() : BALL::VIEW::Scene
• processor_ : BALL::NonpolarSolvation , BALL::VIEW::AtomOverview
• processRotateModeMouseEvents_() : BALL::VIEW::Scene
• prod_ : BALL::DSN6File
• Product() : BALL::Product< First, Second, DataType >
• progress_bar_ : BALL::VIEW::DownloadPDBFile , BALL::VIEW::DownloadElectronDensity
• progress_dialog_ : BALL::VIEW::DockingController
• project() : BALL::PairExpRDFIntegrator , BALL::Pair6_12RDFIntegrator
• project_ : BALL::VIEW::HelpViewer , BALL::VIEW::ShowHelpMessage
• project_target_to_ring_plane_ : BALL::HaighMallionShiftProcessor
• projection_mode_ : BALL::VIEW::Camera
• ProjectionMode : BALL::VIEW::Camera
• projectionModeChanged() : BALL::VIEW::Scene , BALL::VIEW::RenderSetup
• projectionTransformationChanged() : BALL::VIEW::StageSettings
• prolineActivated() : BALL::VIEW::PeptideDialog
• prolineDeactivated() : BALL::VIEW::PeptideDialog
• PROMETHIUM : BALL::Element
• prop_ : BALL::DNAMutator
• PropDeleteWidget() : BALL::VIEW::PropDeleteWidget
• PropEditorWidget() : BALL::VIEW::PropEditorWidget
• Properties : BALL::VIEW::Representation
• properties_ : BALL::Composite , BALL::SmartsParser::SPAtom , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• properties_real_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• properties_string_ : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• PropertiesForShift_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• Property() : BALL::SmartsParser::SPAtom::Property , BALL::Fragment , BALL::Atom , BALL::Molecule , BALL::Protein , BALL::SmartsParser::SPAtom::Property , BALL::SDGenerator , BALL::Nucleotide , BALL::SmartsParser::SPAtom::Property , BALL::PDBAtom , BALL::SmartsParser::SPAtom::Property , BALL::Chain , BALL::Bond , BALL::NucleicAcid , BALL::Residue , BALL::AtomContainer
• PROPERTY__3_PRIME : BALL::Nucleotide
• PROPERTY__5_PRIME : BALL::Nucleotide
• PROPERTY__ALWAYS_FRONT : BALL::VIEW::Representation
• PROPERTY__AMINO_ACID : BALL::Residue
• PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
• PROPERTY__C_TERMINAL : BALL::Residue
• PROPERTY__CYCLIC : BALL::Residue
• PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
• PROPERTY__EHS_SHIFT : BALL::EmpiricalHSShiftProcessor
• PROPERTY__EXPERIMENTAL__SHIFT : BALL::ShiftModule
• PROPERTY__HAS_SSBOND : BALL::Residue
• PROPERTY__HBOND_SHIFT : BALL::HBondShiftProcessor
• PROPERTY__HETATM : BALL::PDBAtom
• PROPERTY__IS_COORDINATE_SYSTEM : BALL::VIEW::Representation
• PROPERTY__N_TERMINAL : BALL::Residue
• PROPERTY__NON_STANDARD : BALL::Residue
• PROPERTY__NUCLEOTIDE : BALL::Nucleotide
• PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
• PROPERTY__RING_CURRENT_SHIFT : BALL::JohnsonBoveyShiftProcessor , BALL::HaighMallionShiftProcessor
• PROPERTY__SHIFT : BALL::ShiftModule
• PROPERTY__WATER : BALL::Residue
• property_files_ : BALL::EmpiricalHSShiftProcessor
• property_pairs_ : BALL::EmpiricalHSShiftProcessor
• PropertyEditor() : BALL::VIEW::PropertyEditor
• PropertyError() : BALL::QSAR::Exception::PropertyError
• PropertyManager() : BALL::PropertyManager
• PropertyType : BALL::SmartsParser::SPAtom
• PROTACTINIUM : BALL::Element
• Protein() : BALL::Protein
• protein_ : BALL::VIEW::PeptideDialog
• PROTEIN_A : BALL::GeometricFit
• PROTEIN_B : BALL::GeometricFit
• protein_clash_rad_ : BALL::BindingPocketProcessor
• protein_grid_ : BALL::BindingPocketProcessor
• ProteinIndex : BALL::GeometricFit
• ProteinIteratorTraits() : BALL::ProteinIteratorTraits
• proteinname_ : BALL::Peptides::PeptideBuilder
• protomode() : BALL::VIEW::ExportGeometryDialog
• proton_list_ : BALL::JohnsonBoveyShiftProcessor , BALL::AnisotropyShiftProcessor
• PROTON_MASS : BALL::Constant
• proxy_model_ : BALL::VIEW::ShortcutTableView
• proxyEnabled() : BALL::VIEW::NetworkPreferences
• proxyModeChanged() : BALL::VIEW::NetworkPreferences
• prune() : BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound >
• PSEUDO_ATOMS_INIFile : BALL::Peptides::NameConverter::Default , BALL::Peptides::NameConverter::Option
• pseudo_conventions_ : BALL::Peptides::NameConverter
• pseudo_conversion_table_ : BALL::Peptides::NameConverter
• psi_ : BALL::Peptides::AminoAcidDescriptor , BALL::ResidueRotamerSet , BALL::GeometricFit::RotationAngles_
• PSI_MAX : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• PSI_MIN : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• Pt : BALL::Element
• PTE_() : BALL::PTE_
• pte_ : BALL::VIEW::EditFunctions
• PTE_() : BALL::PTE_
• PTEDialog() : BALL::VIEW::PTEDialog
• ptr_ : BALL::TContourSurface< T >::Cube
• Pu : BALL::Element
• pubchem_rest_url_ : BALL::PubChemDownloader
• PubChemDialog() : BALL::VIEW::PubChemDialog
• PubChemDownloader() : BALL::PubChemDownloader
• PURE_DOUBLE_BOND : BALL::GAFFCESParser::APSMatcher
• PURE_DOUBLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
• PURE_SINGLE_BOND : BALL::GAFFCESParser::APSMatcher
• PURE_SINGLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
• push() : BALL::RingPerceptionProcessor::PathMessage_ , BALL::ResourceEntry::IteratorTraits_
• push_back() : BALL::PDBRecords
• pushbackNCS() : BALL::CrystalInfo
• pushBackNormal() : BALL::TSurface< T >
• pushBackTriangle() : BALL::TSurface< T >
• pushBackVertex() : BALL::TSurface< T >
• pushCFS_() : BALL::SDGenerator
• pushConcaveEdge() : BALL::SESComputer
• pushVertex() : BALL::SESComputer
• put() : BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager
• putbackLine() : BALL::QSAR::ConfigIO
• pw_ : BALL::VIEW::PyWidget::MyLineEdit , BALL::VIEW::PyWidget::MyTextEdit
• PW_GAUSSIAN_WIDTH : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• pw_grid_ : BALL::BindingPocketProcessor
• PW_MAX_DISTANCE : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
• PW_SQUARE_WELL : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• PyColorRGBAVector() : BALL::PyColorRGBAVector
• PyCompositeList() : BALL::PyCompositeList
• PyDatasetVector() : BALL::PyDatasetVector
• PyIndexList() : BALL::PyIndexList
• PyInterpreter() : BALL::PyInterpreter
• python_format : BALL::VIEW::PythonHighlighter
• python_keywords : BALL::VIEW::PythonHighlighter
• python_line_ : BALL::VIEW::TestFramework
• python_patterns : BALL::VIEW::PythonHighlighter
• python_settings_ : BALL::VIEW::PyWidget
• PythonHighlighter() : BALL::VIEW::PythonHighlighter
• PythonSettings() : BALL::VIEW::PythonSettings
• PythonValidator() : BALL::VIEW::PythonValidator
• PyWidget() : BALL::VIEW::PyWidget