'TOPP - The OpenMS PiPeline' is a pipeline for the analysis of HPLC-MS data. It consists of several small applications that can be chained to create analysis pipelines tailored for a specific problem.

The TOPP tools are divided into several subgroups: Graphical Tools

TOPPView - A viewer for mass spectrometry data.
TOPPAS - An assistant for GUI-driven TOPP workflow design.
INIFileEditor - An editor for OpenMS configuration files.
SwathWizard - A user-friendly step-by-step wizard for SWATH data analysis
FLASHDeconvWizard - A user-friendly step-by-step wizard for the FLASHDeconv tool

File Converter

FileConverter - Converts between different MS file formats.
GNPSExport - Export MS/MS data in .MGF format for GNPS.
IDFileConverter - Converts between different identification file formats.
MSstatsConverter - Convert to MSstats input file format.
MzTabExporter - Exports various XML formats to an mzTab file. /