BALL: Class Members

Here is a list of all class members with links to the classes they belong to:

- r -

R : BALL::Constant
r : BALL::FDPB::FastAtomStruct
r0 : BALL::MMFF94StretchBend::Stretch , BALL::QuadraticBondStretch::Values , BALL::MMFF94StretchParameters::EmpiricalBondData
r0_ : BALL::QuadraticBondStretch
r0_normal : BALL::MMFF94StretchParameters::BondData
r0_sbmb : BALL::MMFF94StretchParameters::BondData
r1_ : BALL::ChemScoreMetal
r1_offset_ : BALL::BuriedPolar , BALL::Lipophilic
r2_ : BALL::ChemScoreMetal
R2_ : BALL::QSAR::RegressionValidation
r2_offset_ : BALL::BuriedPolar , BALL::Lipophilic
r_direction_ : BALL::VIEW::LightSource
R_ij_o_ : BALL::PairExpRDFIntegrator
r_max_ : BALL::ReducedSurface
r_min : BALL::CharmmEEF1::Values
R_min_ : BALL::CharmmEEF1
r_position_ : BALL::VIEW::LightSource
Ra : BALL::Element
RAD_PER_DEG : BALL::Constant
RadialDistributionFunction() : BALL::RadialDistributionFunction
radii : BALL::MMFF94StretchParameters
radii_ : BALL::ElectrostaticPotentialCalculator
RADIUM : BALL::Element
radius : BALL::JohnsonBoveyShiftProcessor::Ring , BALL::SolventAtomDescriptor , BALL::BindingPocketProcessor::Sphere_ , BALL::TCircle3< T > , BALL::TSphere3< T >
radius_ : BALL::Atom , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Tube , BALL::VIEW::TwoColoredTube , BALL::BindingPocketProcessor
radius_a_ : BALL::GeometricFit
radius_b_ : BALL::GeometricFit
RADIUS_CARBON : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
radius_factor_ : BALL::VIEW::AddVanDerWaalsModel
RADIUS_HYDROGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
RADIUS_NITROGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
radius_of_torus_ : BALL::RSEdge
radius_offset_ : BALL::SurfaceProcessor
RADIUS_OXYGEN : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
radius_processor_ : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
radius_rule_processor_ : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
RADIUS_SULFUR : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
RadiusRuleProcessor() : BALL::RadiusRuleProcessor
RADON : BALL::Element
RANDOM : BALL::VIEW::DockingController
RandomAccessFilterIterator() : BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess >
RandomAccessIterator() : BALL::RandomAccessIterator< Container, DataType, Position, Traits >
RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
randomDouble() : BALL::RandomNumberGenerator
RandomEvaluation() : BALL::RandomEvaluation
randomGaussian() : BALL::RandomNumberGenerator
randomInteger() : BALL::RandomNumberGenerator
RandomNumberGenerator() : BALL::RandomNumberGenerator
randomUniform() : BALL::RandomNumberGenerator
Range : BALL::TAngle< T >
range_ : BALL::PiecewiseFunction
RANGE__SIGNED : BALL::TAngle< T >
RANGE__UNLIMITED : BALL::TAngle< T >
RANGE__UNSIGNED : BALL::TAngle< T >
rank_ : BALL::MPISupport
RANK_1 : BALL::ShiftedLVMMMinimizer
RANK_2 : BALL::ShiftedLVMMMinimizer
RATIO_OF_SHIFT_PARAMS : BALL::ShiftedLVMMMinimizer
RaytraceableContourSurfaceDialog() : BALL::VIEW::RaytraceableContourSurfaceDialog
RaytraceableGrid() : BALL::VIEW::RaytraceableGrid
RaytraceableGridController() : BALL::VIEW::RaytraceableGridController
Rb : BALL::Element
rb_ : BALL::VIEW::Scene
rbegin() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ConstReverseIterator< Container, DataType, Position, Traits > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::Gradient
rbeginBond() : BALL::Atom
rbeginChildComposite() : BALL::Composite
rbeginComposite() : BALL::Composite
rdbuf() : BALL::LogStream
rdf_ : BALL::RDFIntegrator , BALL::RDFSection
RDF_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default
rdf_indices_ : BALL::RDFParameter
rdf_integrator_ : BALL::Pair6_12InteractionEnergyProcessor
rdf_list_ : BALL::RDFParameter
rdf_parameter_ : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
RDFIntegrator() : BALL::RDFIntegrator
RDFParameter() : BALL::RDFParameter
RDFSection() : BALL::RDFSection
Re : BALL::Element
reacting_center_status : BALL::MOLFile::BondStruct
reaction_component_number : BALL::MOLFile::AtomStruct
reaction_component_type : BALL::MOLFile::AtomStruct
reaction_field_energy_ : BALL::FDPB
reactTo() : BALL::VIEW::PyWidget
reactToKeyEvent_() : BALL::VIEW::EditableScene
reactToMessages_() : BALL::VIEW::MolecularControl
read() : BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::BitVector , BALL::Options , BALL::AntechamberFile , BALL::Bruker1DFile , BALL::Bruker2DFile , BALL::CCP4File , BALL::CIFFile , BALL::DCDFile , BALL::DSN6File , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile , BALL::MOL2File , BALL::MOLFile , BALL::NMRStarFile , BALL::PDBFile , BALL::SDFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::XYZFile , BALL::TVector3< T > , BALL::GAFFCESParser
read_all_pdb_models_ : BALL::VIEW::MolecularFileDialog
read_atoms_ : BALL::SDFile
read_sd_descriptors : BALL::QSAR::InputConfiguration
read_start_ : BALL::GAFFCESParser
readACFile() : BALL::VIEW::MolecularFileDialog
readAndInitBondAnglesFromFile_() : BALL::HybridisationProcessor
readAtomicPolarizabilities_() : BALL::SimpleBase
readAtomLine_() : BALL::MOLFile
readAtomPenalties_() : BALL::AssignBondOrderProcessor
readAtomSection_() : BALL::MOL2File
readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
readBinValueasFloat_() : BALL::CCP4File
readBinValueasInt_() : BALL::CCP4File
readBondLengthsFromFile_() : BALL::BuildBondsProcessor
readBondLine_() : BALL::MOLFile
readBondSection_() : BALL::MOL2File
readClassInformationFromFile() : BALL::QSAR::ClassificationModel
readCommentSection_() : BALL::MOL2File
readConversionTable_() : BALL::Peptides::NameConverter
readCountsLine_() : BALL::MOLFile
readCSVFile() : BALL::QSAR::QSARData
readCTAB_() : BALL::MOLFile
readDCDFile() : BALL::ConformationSet
readDELIMITER_() : BALL::KCFFile
readDescriptorInformation() : BALL::QSAR::Model
readDescriptorInformationFromFile() : BALL::QSAR::Model , BALL::QSAR::RegressionModel
readDockResult() : BALL::DockResult
readEDGE_() : BALL::KCFFile
readElectronAffinities_() : BALL::PartialChargeProcessor
readEmpiricalParameters() : BALL::MMFF94StretchParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94ESParameters
readENTRY_() : BALL::KCFFile
readEntryInformation_() : BALL::NMRStarFile
readFeatureSelectionConfiguration() : BALL::QSAR::ConfigIO
readFiles() : BALL::VIEW::MolecularFileDialog
readFirstRecord() : BALL::PDBFile
readFloat_() : BALL::DCDFile
readFromFile() : BALL::SnapShotManager , BALL::QSAR::ALLModel , BALL::QSAR::ClassificationValidation , BALL::QSAR::KernelModel , BALL::QSAR::LDAModel , BALL::QSAR::LogitModel , BALL::QSAR::Model , BALL::QSAR::NBModel , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation , BALL::QSAR::SNBModel , BALL::QSAR::Validation
readFromString() : BALL::VIEW::Camera
readHeader() : BALL::DSN6File , BALL::TrajectoryFile , BALL::CCP4File , BALL::DCDFile
readHeaderValue_() : BALL::DSN6File
readHINFile() : BALL::VIEW::MolecularFileDialog
readInputConfiguration() : BALL::QSAR::ConfigIO
readInputPartitioningConfiguration() : BALL::QSAR::ConfigIO
readInvalidRecord() : BALL::PDBFile
readIonizationEnergies_() : BALL::PartialChargeProcessor
readKernelParametersFromFile() : BALL::QSAR::KernelModel
readLabels() : BALL::QSAR::ClassificationModel
readLights_() : BALL::VIEW::Scene
readLine() : BALL::LineBasedFile , BALL::PDBFile
readMatrix() : BALL::QSAR::Model , BALL::QSAR::QSARData
readModelConfiguration() : BALL::QSAR::ConfigIO
readModelParametersFromFile() : BALL::QSAR::Model
readMOL2File() : BALL::VIEW::MolecularFileDialog
readMoleculeSection_() : BALL::MOL2File
readMOLFile() : BALL::VIEW::MolecularFileDialog
readMolSystem_() : BALL::NMRStarFile
readMonomericPolymers_() : BALL::NMRStarFile
readMSMSFile() : BALL::TSurface< T >
readNextHeader() : BALL::TRRFile
readNextRecord() : BALL::PDBFile
readNMRSpectrometer_() : BALL::NMRStarFile
readNODE_() : BALL::KCFFile
readObject() : BALL::PersistenceManager
readObjectArray() : BALL::PersistenceManager
readObjectPointer() : BALL::PersistenceManager
readObjectPointerArray() : BALL::PersistenceManager
readObjectReference() : BALL::PersistenceManager
readObjectSmartPointer() : BALL::PersistenceManager
readOptionFile() : BALL::Options
readOptions_() : BALL::AssignBondOrderProcessor
readParameters() : BALL::MMFF94ParametersBase
readPDBFile() : BALL::VIEW::MolecularFileDialog
readPredictionConfiguration() : BALL::QSAR::ConfigIO
readPreferenceEntries() : BALL::VIEW::MainControlPreferences , BALL::VIEW::PluginDialog , BALL::VIEW::PythonSettings , BALL::VIEW::PreferencesEntry
readPrimitive() : BALL::PersistenceManager
readPropertyBlock_() : BALL::SDFile
readPropertyNames() : BALL::QSAR::QSARData
readPseudoAtomsConversionTable_() : BALL::Peptides::NameConverter
readRecords() : BALL::PDBFile
readResponseTransformationFromFile() : BALL::QSAR::Model
readSampleConditions_() : BALL::NMRStarFile
readSamples_() : BALL::NMRStarFile
readScalingFactors() : BALL::GeneralizedBornModel
readSCWRLBackboneDependentLibraryFile_() : BALL::SCWRLRotamerFile
readSCWRLBackboneIndependentLibraryFile_() : BALL::SCWRLRotamerFile
readSDFile() : BALL::QSAR::QSARData , BALL::VIEW::MolecularFileDialog
readSetSection_() : BALL::MOL2File
readShiftReferences_() : BALL::NMRStarFile
readShifts_() : BALL::NMRStarFile
readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
readSize_() : BALL::DCDFile
readStorableObject() : BALL::PersistenceManager
readSubstructureSection_() : BALL::MOL2File
readSymmetryRecords() : BALL::CCP4File
readTrainingData() : BALL::QSAR::Model
readTrainingResult() : BALL::QSAR::KernelModel
readUnknownRecord() : BALL::PDBFile
readValidationConfiguration() : BALL::QSAR::ConfigIO
readVector() : BALL::QSAR::Model
readVector_() : BALL::DCDFile
readXYZFile() : BALL::VIEW::MolecularFileDialog
REAL : BALL::RegularExpression
REAL__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
REAL__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
REAL__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
real_renderer_ : BALL::VIEW::TilingRenderer
rebuild_ : BALL::VIEW::Representation
REBUILD_DISPLAY_LISTS : BALL::VIEW::SceneMessage , BALL::VIEW::GLRenderer
rebuildAllRepresentations() : BALL::VIEW::RepresentationManager
rec_edges_ : BALL::SmartsParser
rec_matches_ : BALL::SmartsMatcher
rec_struct_core_ : BALL::SmartsMatcher::RecStruct_
rec_struct_pool_ : BALL::SmartsMatcher::RecStructPool_
receive_updates_ : BALL::VIEW::RenderSetup
received_composite_ : BALL::VIEW::ServerWidget::BALLViewServer
receivedData() : BALL::SimpleDownloaderHelper::DLHelper
receiveOptions() : BALL::MPISupport
receivePersistenceStream_() : BALL::MPISupport
receiver_ : BALL::VIEW::InputDeviceDriver
receiverLock : BALL::VIEW::InputDeviceDriver
receivesBufferUpdates() : BALL::VIEW::RenderSetup
receiveSystem() : BALL::MPISupport
receptor_ : BALL::NonpolarSolvation , BALL::RotationalEntropyLoss
receptor_rings_ : BALL::AromaticRingStacking
recieve() : BALL::RingPerceptionProcessor::TNode_
recieve_buffer : BALL::RingPerceptionProcessor::TNode_
Reciprocal() : BALL::Reciprocal< Function, DataType >
reconstructFragment() : BALL::ReconstructFragmentProcessor
ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
record_animation_action_ : BALL::VIEW::Scene
record_fields_ : BALL::PDBFile
record_name : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCONECT , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT
record_serial_number : BALL::PDB::RecordCISPEP
record_type : BALL::PDB::RecordTypeFormat , BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCISPEP , BALL::PDB::RecordCOMPND , BALL::PDB::RecordCONECT , BALL::PDB::RecordCRYST1 , BALL::PDB::RecordDBREF , BALL::PDB::RecordEND , BALL::PDB::RecordENDMDL , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordFORMUL , BALL::PDB::RecordFTNOTE , BALL::PDB::RecordHEADER , BALL::PDB::RecordHELIX , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordHYDBND , BALL::PDB::RecordJRNL , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordLINK , BALL::PDB::RecordMASTER , BALL::PDB::RecordMODEL , BALL::PDB::RecordMODRES , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordORIGX1 , BALL::PDB::RecordORIGX2 , BALL::PDB::RecordORIGX3 , BALL::PDB::RecordREMARK , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSCALE1 , BALL::PDB::RecordSCALE2 , BALL::PDB::RecordSCALE3 , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSITE , BALL::PDB::RecordSLTBRG , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTITLE , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT
RecordHELIX() : BALL::PDB::RecordHELIX
recording_ : BALL::VIEW::TestFramework
RecordMASTER() : BALL::PDB::RecordMASTER
records_ : BALL::PDBRecords
RecordSEQRES() : BALL::PDB::RecordSEQRES
RecordSHEET() : BALL::PDB::RecordSHEET
RecordSSBOND() : BALL::PDB::RecordSSBOND
RecordTURN() : BALL::PDB::RecordTURN
RecStruct_() : BALL::SmartsMatcher::RecStruct_
RecStructCore_() : BALL::SmartsMatcher::RecStructCore_
RecStructPool_() : BALL::SmartsMatcher::RecStructPool_
recurseGeneration_() : BALL::VIEW::MolecularControl
recursion_() : BALL::ConnectivityBase
recursive_ : BALL::SmartsParser::SPNode , BALL::SmartsParser
red_ : BALL::VIEW::ColorRGBA
RED_CHANNEL : BALL::VIEW::ChannelFormat
redock_() : BALL::VIEW::DockResultDialog
redock_partner1_ : BALL::VIEW::DockResultDialog
redock_partner2_ : BALL::VIEW::DockResultDialog
REDRAW : BALL::VIEW::SceneMessage
redraw_queue_ : BALL::SDGenerator
redrawAllRepresentations() : BALL::VIEW::MainControl
reduced_surface_ : BALL::SolventAccessibleSurface , BALL::SolventExcludedSurface
ReducedSurface : BALL::RSFace , BALL::RSVertex , BALL::ReducedSurface , BALL::RSEdge
reduceSelection_() : BALL::VIEW::MainControl
REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::Option , BALL::BuildBondsProcessor::Default
reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
Reference : BALL::PDBRecords
reference : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::PDBRecords , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::VIEW::CompositeManager , BALL::NMRStarFile::NMRAtomDataSet , BALL::NMRAtomDataSet , BALL::NMRStarFile::NMRAtomDataSet
reference_composite_ : BALL::FragmentDistanceCollector
reference_method : BALL::NMRStarFile::ShiftReferenceElement , BALL::ShiftReferenceElement , BALL::NMRStarFile::ShiftReferenceElement
REFERENCE_METHOD : BALL::NMRStarFile
reference_options_ : BALL::NMRStarFile
REFERENCE_TEMPERATURE : BALL::MolecularDynamics::Option , BALL::MolecularDynamics::Default
reference_temperature_ : BALL::MolecularDynamics
reference_type : BALL::NMRStarFile::ShiftReferenceElement , BALL::ShiftReferenceElement , BALL::NMRStarFile::ShiftReferenceElement
REFERENCE_TYPE : BALL::NMRStarFile
ReferenceMethod : BALL::NMRStarFile
ReferenceType : BALL::NMRStarFile
refine() : BALL::TriangulatedSphere
refineGuidePoints_() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
refineModelParts_() : BALL::VIEW::AddBackboneModel
reflective_color : BALL::VIEW::Stage::RaytracingMaterial
reflective_intensity : BALL::VIEW::Stage::RaytracingMaterial
reflectivenessFactorChanged() : BALL::VIEW::MaterialSettings
refresh() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderTarget , BALL::VIEW::RenderWindow< taPixelDatatype >
regex_ : BALL::RegularExpression
register_ : BALL::VIEW::RegisterHelpSystemMessage
registerAt() : BALL::LogStreamNotifier
registerChildEntry() : BALL::VIEW::PluginDialog
registerClass() : BALL::PersistenceManager
registerComponents_() : BALL::SLICKEnergy , BALL::SLICKScore
registerConnectionObject() : BALL::VIEW::ConnectionObject
registerController() : BALL::VIEW::DatasetControl
registered_at_ : BALL::LogStreamNotifier
registered_models : BALL::QSAR::Registry
registered_modules_ : BALL::ShiftModel
registered_objects_ : BALL::VIEW::PreferencesEntry
registerForHelpSystem() : BALL::VIEW::ModularWidget , BALL::VIEW::DockWidget , BALL::VIEW::HelpViewer
registerHandler() : BALL::PluginManager
RegisterHelpSystemMessage() : BALL::VIEW::RegisterHelpSystemMessage
registerInstance_() : BALL::Embeddable
registerKernelClasses_() : BALL::PersistenceManager
registerModule() : BALL::ShiftModel
registerObject_() : BALL::VIEW::PreferencesEntry
registerObjectCreator() : BALL::VIEW::ServerWidget
registerPredicate() : BALL::Expression
registerShortcut() : BALL::VIEW::ShortcutRegistry
registerStandardModules_() : BALL::ShiftModel
registerStandardPredicates_() : BALL::Expression
registerThis() : BALL::Embeddable
registerTransformation() : BALL::TransformationManager , BALL::File
registerTypes_() : BALL::MPISupport
registerWidget() : BALL::VIEW::ModularWidget
registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
registerWidgets_() : BALL::VIEW::PreferencesEntry
Registry : BALL::QSAR::RegistryEntry , BALL::QSAR::Registry
registry_ : BALL::QSAR::RegistryEntry , BALL::VIEW::ShortcutTableModel
RegistryEntry : BALL::QSAR::Registry , BALL::QSAR::RegistryEntry
regr_model_ : BALL::QSAR::RegressionValidation
regression : BALL::QSAR::RegistryEntry
regression_statistics : BALL::QSAR::Registry
RegressionModel() : BALL::QSAR::RegressionModel
RegressionValidation : BALL::QSAR::KernelModel , BALL::QSAR::LatentVariableModel , BALL::QSAR::Model , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation
RegularData1DWidget() : BALL::VIEW::RegularData1DWidget
RegularData2DWidget() : BALL::VIEW::RegularData2DWidget
RegularData3DController() : BALL::VIEW::RegularData3DController
RegularExpression() : BALL::RegularExpression
rehash() : BALL::HashSet< Key >
rehash_() : BALL::HashSet< Key >
ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
reject() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::EditSingleShortcut , BALL::VIEW::GeometricFitDialog , BALL::VIEW::MMFF94ConfigurationDialog , BALL::VIEW::Preferences , BALL::VIEW::RaytraceableContourSurfaceDialog
related_database_entries : BALL::NMRStarFile::MolecularSystem
RelatedDB() : BALL::NMRStarFile::MolecularSystem::RelatedDB
relation_type : BALL::NMRStarFile::MolecularSystem::RelatedDB
relative_ : BALL::VIEW::LightSource
RELEASE_DATE_AND_TIME : BALL::VersionInfo
RELEASE_WHAT_STRING : BALL::VersionInfo
releaseBuffer() : BALL::VIEW::RenderTarget , BALL::VIEW::RenderWindow< taPixelDatatype >
RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
RelNegativePartialCharge() : BALL::RelNegativePartialCharge
RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
RelPolarVdWSurface() : BALL::RelPolarVdWSurface
RelPositivePartialCharge() : BALL::RelPositivePartialCharge
RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
remark_number : BALL::PDB::RecordREMARK
remark_records : BALL::PDB::BookKeeping
remoteness_indicator_ : BALL::PDBAtom
REMOTENESS_INDICATOR__alpha : BALL::PDBAtom
REMOTENESS_INDICATOR__ALPHA : BALL::PDBAtom
REMOTENESS_INDICATOR__BETA : BALL::PDBAtom
REMOTENESS_INDICATOR__beta : BALL::PDBAtom
REMOTENESS_INDICATOR__DELTA : BALL::PDBAtom
REMOTENESS_INDICATOR__delta : BALL::PDBAtom
REMOTENESS_INDICATOR__EPSILON : BALL::PDBAtom
REMOTENESS_INDICATOR__epsilon : BALL::PDBAtom
REMOTENESS_INDICATOR__ETA : BALL::PDBAtom
REMOTENESS_INDICATOR__eta : BALL::PDBAtom
REMOTENESS_INDICATOR__gamma : BALL::PDBAtom
REMOTENESS_INDICATOR__GAMMA : BALL::PDBAtom
REMOTENESS_INDICATOR__UNKNOWN : BALL::PDBAtom
REMOTENESS_INDICATOR__ZETA : BALL::PDBAtom
REMOTENESS_INDICATOR__zeta : BALL::PDBAtom
RemotenessIndicator : BALL::PDBAtom
remove() : BALL::Directory , BALL::VIEW::CompositeManager , BALL::TriangulatedSurface , BALL::SecondaryStructure , BALL::GraphFace< Vertex, Edge, Face > , BALL::Nucleotide , BALL::List< Value > , BALL::Chain , BALL::LogStream , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::StringHashMap< Value > , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSFace , BALL::Triangle , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager
REMOVE : BALL::VIEW::DatasetMessage , BALL::VIEW::RepresentationMessage
remove_() : BALL::VIEW::MainControl
REMOVE_COORDINATE_SYSTEM : BALL::VIEW::SceneMessage
remove_correlated : BALL::QSAR::FeatureSelectionConfiguration
removeAll() : BALL::HashGridBox3< Item >
removeChild() : BALL::ConnectedToPredicate::CTPNode , BALL::Composite , BALL::ResourceEntry
removeClippingPlane() : BALL::VIEW::RepresentationManager
removeComponent() : BALL::ForceField , BALL::ComposedEnergyProcessor , BALL::ForceField , BALL::ScoringFunction
removeComposite() : BALL::VIEW::MolecularControl
REMOVED_COMPOSITE : BALL::VIEW::CompositeMessage
removedComposite() : BALL::VIEW::RepresentationManager
removeEmptyDescriptors() : BALL::QSAR::FeatureSelection
removeEntry() : BALL::VIEW::Preferences
removeFile_() : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
removeGrid_() : BALL::VIEW::ModifyRepresentationDialog
removeGridTextures() : BALL::VIEW::RenderSetup
removeHavingProperty() : BALL::AtomContainer
removeHighlyCorrelatedCompounds() : BALL::QSAR::QSARData
removeHighlyCorrelatedFeatures() : BALL::QSAR::FeatureSelection
removeHotkey() : BALL::VIEW::PyWidget
removeInsideTriangles() : BALL::SASTriangulator
removeInvalidDescriptors() : BALL::QSAR::QSARData
removeInvalidSubstances() : BALL::QSAR::QSARData
removeItem_() : BALL::VIEW::Preferences , BALL::VIEW::GenericControl
removeKey() : BALL::ResourceEntry , BALL::ResourceFile
removeLightPressed() : BALL::VIEW::LightSettings
removeLightSource() : BALL::VIEW::Stage
removeLowResponseCorrelation() : BALL::QSAR::FeatureSelection
removeMenuEntry() : BALL::VIEW::MainControl
removeModularWidget() : BALL::VIEW::MainControl
removeNotHavingProperty() : BALL::AtomContainer
removePluginDirectory() : BALL::VIEW::PluginDialog , BALL::PluginManager
removeRecursive_() : BALL::VIEW::MolecularControl
removeRepresentation() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer , BALL::VIEW::GeometricControl
removeSelected() : BALL::Composite
removeSelection() : BALL::VIEW::HotkeyTable
removeSolvent() : BALL::PeriodicBoundary
removeTextureFor_() : BALL::VIEW::GLRenderer
removeUnselected() : BALL::Composite
rename() : BALL::Directory , BALL::File , BALL::VIEW::SnapshotManagerInterface
renameRepresentation() : BALL::VIEW::GeometricControl
renameTo() : BALL::Directory , BALL::File
rend() : BALL::ConstReverseIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::Gradient
rendBond() : BALL::Atom
rendChildComposite() : BALL::Composite
rendComposite() : BALL::Composite
render() : BALL::VIEW::GLRenderer
render_() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
render_mode_ : BALL::VIEW::GLRenderer
RENDER_MODE_ALWAYS_FRONT : BALL::VIEW::GLRenderer
RENDER_MODE_SOLID : BALL::VIEW::GLRenderer
RENDER_MODE_TRANSPARENT : BALL::VIEW::GLRenderer
RENDER_MODE_UNDEFINED : BALL::VIEW::GLRenderer
render_mutex_ : BALL::VIEW::RenderSetup
render_timer_ : BALL::VIEW::MainControl
renderBox_() : BALL::VIEW::Renderer , BALL::VIEW::GLRenderer
renderClippingPlane_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderDashedBond_() : BALL::VIEW::AddBallAndStickModel
renderDisc_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
Renderer() : BALL::VIEW::Renderer
renderer : BALL::VIEW::RenderSetup
Renderer() : BALL::VIEW::Renderer
rendererChanged() : BALL::VIEW::MaterialSettings
renderers_ : BALL::VIEW::Scene
renderGrid_() : BALL::VIEW::EditableScene
renderGridVisualisation_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
rendering_paused_ : BALL::VIEW::RenderSetup
renderLabel_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
renderLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
renderMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
RenderMode : BALL::VIEW::GLRenderer
renderMultiLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::POVRenderer
renderMultipleBond_() : BALL::VIEW::AddBallAndStickModel
renderNucleotideOutline_() : BALL::VIEW::AddCartoonModel
renderOneRepresentation() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
renderPoint_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::POVRenderer
renderQuadMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderRepresentation_() : BALL::VIEW::GLRenderer
renderRepresentations_() : BALL::VIEW::GLRenderer
renderRuler() : BALL::VIEW::TilingRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderSD_() : BALL::VIEW::SDWidget
RenderSetup : BALL::VIEW::Scene , BALL::VIEW::RenderSetup
renderSimpleBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderSphere_() : BALL::VIEW::VRMLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderStandardBond_() : BALL::VIEW::AddBallAndStickModel
renderText() : BALL::VIEW::GLRenderWindow
renderToBuffer() : BALL::VIEW::GLRenderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer , BALL::VIEW::BufferedRenderer
renderToBuffer_() : BALL::VIEW::RenderSetup
renderToBufferImpl() : BALL::VIEW::BufferedRenderer
renderTube_() : BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::Renderer , BALL::VIEW::GLRenderer , BALL::VIEW::VRMLRenderer
renderTwoColoredLine_() : BALL::VIEW::Renderer , BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::VRMLRenderer
renderTwoColoredTube_() : BALL::VIEW::POVRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::GLRenderer
RenderWindow() : BALL::VIEW::RenderWindow< taPixelDatatype >
reopen() : BALL::File
rep_ : BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::UpdateRepresentationThread , BALL::VIEW::DisplayProperties
rep_label_ : BALL::VIEW::MainControl
rep_label_delta_ : BALL::VIEW::MainControl
rep_label_nr_ : BALL::VIEW::MainControl
rep_to_buffers_ : BALL::VIEW::GLRenderer
replace() : BALL::Composite
replacing_entry_code : BALL::PDB::RecordOBSLTE
reply_ : BALL::SimpleDownloaderHelper::BasicHelper
Representation() : BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::Representation
representation_ : BALL::VIEW::RepresentationMessage , BALL::RadialDistributionFunction
representation_to_item_ : BALL::VIEW::GeometricControl
RepresentationManager() : BALL::VIEW::RepresentationManager , BALL::VIEW::MainControl , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager
RepresentationMessage() : BALL::VIEW::RepresentationMessage
RepresentationMessageType : BALL::VIEW::RepresentationMessage
representations_ : BALL::VIEW::RepresentationManager , BALL::VIEW::POVRenderer
RepresentationsConstIterator : BALL::VIEW::RepresentationManager
RepresentationSet : BALL::VIEW::RepresentationManager
RepresentationsIterator : BALL::VIEW::RepresentationManager
reps : BALL::VIEW::ExportGeometryDialog
reps_ : BALL::VIEW::ClippingPlane
res : BALL::HBondProcessor::ResidueData
rescale() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
reset() : BALL::Path , BALL::VIEW::GeometricFitDialog , BALL::Mainframe , BALL::VIEW::DockDialog , BALL::Timer , BALL::VIEW::EditSingleShortcut
resetBondOrders() : BALL::AssignBondOrderProcessor
resetCamera_() : BALL::VIEW::Scene
resetCounter() : BALL::TContour< T > , BALL::TContourLine< T >
resetLanguageChanged() : BALL::VIEW::MainControlPreferences
resetOptions() : BALL::VIEW::MMFF94ConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog
resetPositions() : BALL::AtomVector
resetPredicate() : BALL::AtomContainerIteratorTraits , BALL::MoleculeIteratorTraits , BALL::NucleicAcidIteratorTraits , BALL::SecondaryStructureIteratorTraits , BALL::NucleotideIteratorTraits , BALL::ChainIteratorTraits , BALL::ResidueIteratorTraits , BALL::AtomIteratorTraits , BALL::FragmentIteratorTraits , BALL::PDBAtomIteratorTraits , BALL::ProteinIteratorTraits
resetPressed() : BALL::VIEW::FDPBDialog , BALL::VIEW::DockDialog
resetRepresentationsForRenderer_() : BALL::VIEW::Scene
resetScoring() : BALL::ConformationSet
resetTo_pressed() : BALL::VIEW::UndoManagerDialog
resetTracking() : BALL::VIEW::Scene
Residue() : BALL::Residue
residue : BALL::PDB::RecordSLTBRG::PartnerAtom , BALL::PDB::RecordANISOU , BALL::PDB::Structure::AtomEntry , BALL::PDB::RecordSEQADV , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordLINK::LinkPartner , BALL::PDB::RecordHYDBND::HydrogenPartnerAtom , BALL::PDB::RecordATOM
Residue() : BALL::Residue
residue : BALL::PDB::RecordMODRES
Residue() : BALL::PDB::Residue , BALL::Residue
residue : BALL::PDB::RecordCISPEP , BALL::PDB::RecordHET , BALL::PDB::RecordHETATM , BALL::PDB::RecordHYDBND::HydrogenAtom , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSITE , BALL::PDB::RecordTER
residue_data_ : BALL::HBondProcessor
residue_id : BALL::PDB::AdditionalAtomInfo
residue_in_current_strand : BALL::PDB::RecordSHEET
residue_in_previous_strand : BALL::PDB::RecordSHEET
residue_insertion_code : BALL::PDB::AdditionalAtomInfo
residue_label : BALL::NMRStarFile::NMRAtomData , BALL::NMRAtomData
residue_map_ : BALL::PDBFile , BALL::VIEW::ResidueNumberColorProcessor
residue_name : BALL::PDB::RecordSEQRES , BALL::ResidueTorsions::Data , BALL::PDB::AdditionalAtomInfo
residue_name_ : BALL::PDBFile
residue_ptr_to_position_ : BALL::HBondProcessor
residue_seq_code : BALL::NMRAtomData , BALL::NMRStarFile::NMRAtomData
residue_sequence : BALL::NMRStarFile::MonomericPolymer
residue_sequence_number_ : BALL::PDBFile
residue_torsions_ : BALL::CharmmTorsion
ResidueChecker() : BALL::ResidueChecker
ResidueIteratorTraits() : BALL::ResidueIteratorTraits
ResidueMap : BALL::PDBFile
ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
ResidueNumberColorProcessor() : BALL::VIEW::ResidueNumberColorProcessor
ResidueQuadruple : BALL::PDBFile
ResidueRotamerSet() : BALL::ResidueRotamerSet
residues : BALL::VIEW::AddBackboneModel::ModelPart
residues_by_index : BALL::NMRStarFile::MonomericPolymer
residues_to_be_rendered_ : BALL::VIEW::AddBackboneModel
residues_with_rings_ : BALL::JohnsonBoveyShiftProcessor
residuesAreConnected_() : BALL::VIEW::AddBackboneModel
ResidueTorsions() : BALL::ResidueTorsions
ResidueTypeColorProcessor() : BALL::VIEW::ResidueTypeColorProcessor
resize() : BALL::PDBRecords , BALL::VIEW::MainControl , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderWindow< taPixelDatatype > , BALL::VIEW::RenderTarget , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::FrameBufferFormat , BALL::VIEW::RenderSetup , BALL::TRegularData3D< ValueType > , BALL::AtomVector , BALL::TRegularData2D< ValueType > , BALL::TRegularData1D< ValueType >
resize_() : BALL::SmartsMatcher::RecStructPool_
resize_to_parent_ : BALL::VIEW::SDWidget
resized() : BALL::VIEW::FrameBufferFormat
resizeEvent() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::Scene , BALL::VIEW::DockableRegularData2DWidget
resizeGrid() : BALL::VIEW::RegularData3DController
resizeNormals() : BALL::TSurface< T >
resizeTriangles() : BALL::TSurface< T >
resizeVertices() : BALL::TSurface< T >
Resolution() : BALL::VIEW::Resolution
resolvePseudoAtoms() : BALL::Peptides::NameConverter
ResourceEntry() : BALL::ResourceEntry
ResourceFile() : BALL::ResourceFile
restart_ : BALL::TCPServer
restart_frequency_ : BALL::ConjugateGradientMinimizer
restoreDefaultValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
restoreItem_() : BALL::VIEW::AtomOverview
restoreRepresentations() : BALL::VIEW::RepresentationManager
restoreTrainingResults() : BALL::QSAR::RegressionValidation
restoreValues() : BALL::VIEW::PreferencesEntry , BALL::VIEW::LightSettings
restoreValues_() : BALL::VIEW::PreferencesEntry
restoreViewPoint() : BALL::VIEW::Scene
restoreWindows() : BALL::VIEW::MainControl
Result : BALL::RMSDMinimizer , BALL::Processor
result_ : BALL::RombergIntegrator< Function, DataType > , BALL::SimpleDownloaderHelper::DLArrayHelper , BALL::SimpleDownloaderHelper::DLThread
result_type : BALL::UnaryFunctor< ArgumentType, ResultType > , BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
results : BALL::FDPB
results_ : BALL::VIEW::PyWidget
retrieveHistoryLine_() : BALL::VIEW::PyWidget
retrieveSymOps_() : BALL::CrystalInfo
return_average_ : BALL::CubicSpline1D , BALL::CubicSpline2D
returnPressed() : BALL::VIEW::PyWidget
reverse() : BALL::String
reverse_iterator : BALL::PDBRecords
ReverseIterator() : BALL::ReverseIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::Gradient , BALL::ReverseIterator< Container, DataType, Position, Traits >
revert() : BALL::GraphEdge< Vertex, Edge, Face >
rewind() : BALL::LineBasedFile
Rf : BALL::Element
RGB_24 : BALL::VIEW::PixelFormat
RGB_32 : BALL::VIEW::PixelFormat
RGB_3_2_2 : BALL::VIEW::PixelFormat
RGBA_32 : BALL::VIEW::PixelFormat
RGBF_96 : BALL::VIEW::PixelFormat
Rh : BALL::Element
RHENIUM : BALL::Element
rho : BALL::QSAR::LibsvmModel::svm_model
rho_ : BALL::StrangLBFGSMinimizer
RHO_0 : BALL::GeneralizedBornModel::Option , BALL::GeneralizedBornModel::Default
rho_0_ : BALL::GeneralizedBornModel::GBParameters , BALL::GeneralizedBornModel
RHODIUM : BALL::Element
RIBBON : BALL::VIEW::AddBackboneModel
ribbon_height_ : BALL::VIEW::AddBackboneModel
ribbon_mode_ : BALL::VIEW::AddBackboneModel
ribbon_radius_ : BALL::VIEW::AddCartoonModel
ribbon_width_ : BALL::VIEW::AddCartoonModel , BALL::VIEW::AddBackboneModel
ribbonModeEnabled() : BALL::VIEW::AddBackboneModel
ribbonsEnabled() : BALL::VIEW::AddCartoonModel
right() : BALL::String
right_ : BALL::VIEW::GLRenderer
RIGHT_EYE : BALL::VIEW::RenderSetup
RIGHT_EYE_WINDOW : BALL::VIEW::Scene
right_vector_ : BALL::VIEW::Camera , BALL::TBox3< T >
rij : BALL::MMFF94NonBonded::NonBondedPairData
rij_ : BALL::MMFF94VDWParameters
rij_7 : BALL::MMFF94NonBonded::NonBondedPairData
rij_7_ : BALL::MMFF94VDWParameters
Ring() : BALL::RingAnalyser::Ring
ring_analyser_ : BALL::SDGenerator
ring_atoms_ : BALL::HaighMallionShiftProcessor , BALL::VIEW::AtomBondModelBaseProcessor , BALL::RingFinder , BALL::AddHydrogenProcessor , BALL::CHPI::AromaticRing
ring_bonds_ : BALL::VIEW::AddBallAndStickModel
RING_CONNECTED : BALL::SmartsParser::SPAtom
ring_connections_ : BALL::SmartsParser
ring_proc_ : BALL::SMARTSPredicate
ring_systems_ : BALL::RingAnalyser
RingAnalyser() : BALL::RingAnalyser
RingFinder() : BALL::RingFinder
ringIsClockwise_() : BALL::SDGenerator
RingPerceptionProcessor() : BALL::RingPerceptionProcessor
rings_ : BALL::MMFF94 , BALL::RingAnalyser , BALL::VIEW::AtomBondModelBaseProcessor , BALL::JohnsonBoveyShiftProcessor , BALL::RingPerceptionProcessor , BALL::Kekuliser , BALL::AtomTyper
rings_per_bond_ : BALL::RingAnalyser
RingType : BALL::RingAnalyser
rms : BALL::Gradient
RMS_CRITERION : BALL::FDPB::Option , BALL::FDPB::Default
rmsd_ : BALL::StructureMapper
Rn : BALL::Element
RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
root : BALL::GAFFCESParser
root_ : BALL::VIEW::AssignBondOrderResultsDialog , BALL::ResourceFile , BALL::SmartsParser
root_atom : BALL::MOL2File::SubstructureStruct
root_predicate : BALL::GAFFCESParser
ROT_ALGORITHM : BALL::RotationalEntropyLoss::Default , BALL::RotationalEntropyLoss::Option
ROT_BIND_OFFSET : BALL::RotationalEntropyLoss::Option , BALL::RotationalEntropyLoss::Default
ROT_GRID_SPACING : BALL::RotationalEntropyLoss::Option , BALL::RotationalEntropyLoss::Default
ROT_METHOD : BALL::RotationalEntropyLoss::Option , BALL::RotationalEntropyLoss::Default
Rotamer() : BALL::Rotamer
RotamerLibrary() : BALL::RotamerLibrary
rotamers_ : BALL::ResidueRotamerSet
rotatable_bonds_ : BALL::RotationalEntropyLoss
rotate() : BALL::TMatrix4x4< T > , BALL::VIEW::Camera , BALL::TMatrix4x4< T > , BALL::VIEW::Scene
ROTATE__MODE : BALL::VIEW::Scene
ROTATE_ACTION : BALL::VIEW::Scene
rotate_action_ : BALL::VIEW::Scene
ROTATE_CLOCKWISE_ACTION : BALL::VIEW::Scene
rotateBases() : BALL::DNAMutator
rotateClockwise() : BALL::VIEW::Scene
rotateComposites() : BALL::VIEW::Scene
rotateMode_() : BALL::VIEW::Scene
rotateSameBases() : BALL::DNAMutator
rotateSystem_() : BALL::VIEW::Scene
rotateSystemClockwise_() : BALL::VIEW::Scene
rotateVector3Angle_() : BALL::VIEW::GLRenderer
rotateX() : BALL::TMatrix4x4< T >
rotateY() : BALL::TMatrix4x4< T >
rotateZ() : BALL::TMatrix4x4< T >
rotation_ : BALL::VIEW::TransformationEvent6D , BALL::VIEW::STLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::VRMLRenderer
RotationalEntropyLoss() : BALL::RotationalEntropyLoss
RotationAngles_() : BALL::GeometricFit::RotationAngles_
row_ : BALL::VIEW::AtomOverview::ApplyProcessor
row_averages_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
row_axis_ : BALL::CCP4File
row_spacing_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
rowCount() : BALL::VIEW::PluginModel , BALL::VIEW::ShortcutTableModel
RowIteratorTraits() : BALL::RowIteratorTraits< valuetype, mtraits >
rowSelected() : BALL::VIEW::PythonSettings
RRModel() : BALL::QSAR::RRModel
rs_ : BALL::MMFF94VDWParameters , BALL::RSComputer
RSComputer : BALL::RSVertex , BALL::RSComputer , BALL::ReducedSurface , BALL::RSFace , BALL::RSEdge , BALL::RSComputer
RSEdge() : BALL::RSEdge , BALL::RSFace , BALL::RSEdge , BALL::RSVertex , BALL::RSEdge
rsedge_ : BALL::SESEdge , BALL::SESFace
RSFace() : BALL::RSFace , BALL::RSEdge , BALL::RSVertex , BALL::RSFace
rsface_ : BALL::SESFace
RSVertex : BALL::RSFace , BALL::RSVertex , BALL::RSEdge , BALL::RSVertex
rsvertex_ : BALL::SESFace
rt_contour_surface_dialog_ : BALL::VIEW::RaytraceableGridController
rt_material_ : BALL::VIEW::Stage
Ru : BALL::Element
RUBIDIUM : BALL::Element
rule_map_ : BALL::RuleEvaluator
rule_times : BALL::AtomTyper
rule_types_ : BALL::MMFF94ChargeProcessor
RuleEvaluator() : BALL::RuleEvaluator
RuleList : BALL::RuleEvaluator
RuleMap : BALL::RuleEvaluator
RuleProcessor() : BALL::RuleProcessor
rules_ : BALL::AtomTyper
run() : BALL::SimpleDownloaderHelper::DLThread , BALL::VIEW::TestFramework::MyEventThread , BALL::RSComputer , BALL::SESTriangulator , BALL::VIEW::AnimationThread , BALL::SASTriangulator , BALL::VIEW::CalculateFDPBThread , BALL::VIEW::DockingThread , BALL::SESSingularityCleaner , BALL::TCPServerThread , BALL::VIEW::BALLThread , BALL::VIEW::FakeDriver , BALL::VIEW::EnergyMinimizerThread , BALL::VIEW::RenderSetup , BALL::SESComputer , BALL::VIEW::RunPythonThread , BALL::VIEW::MDSimulationThread , BALL::VIEW::ServerWidget::BALLViewServer , BALL::VIEW::UpdateRepresentationThread , BALL::PyInterpreter
run_test : BALL::VIEW::TestFramework
runBondOrderAssignment() : BALL::VIEW::MolecularStructure
runCommand_() : BALL::VIEW::PyWidget
runCurrentScript() : BALL::VIEW::PyWidget
runDocking() : BALL::VIEW::DockingController
runFile() : BALL::PyInterpreter
RunGAMESSDialog() : BALL::VIEW::RunGAMESSDialog
runMinimization() : BALL::VIEW::MolecularStructure
running_ : BALL::VIEW::PyWidget
running_plugins_ : BALL::PluginHandler
RunPythonThread() : BALL::VIEW::RunPythonThread
runScoring_() : BALL::VIEW::DockingController
runString() : BALL::VIEW::PyWidget
runTest() : BALL::VIEW::TestFramework
runtime_ : BALL::VIEW::TestFramework
RUTHENIUM : BALL::Element
RUTHERFORDIUM : BALL::Element