BALL: Class Members

Here is a list of all class members with links to the classes they belong to:

- c -

C : BALL::Element , BALL::ShiftModel1D
c : BALL::PDB::Structure::UnitCellInfo , BALL::Constant , BALL::PDB::RecordCRYST1::UnitCell , BALL::BindingPocketProcessor::Sphere_ , BALL::SortedPosition3
C1 : BALL::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default
C1_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
C2 : BALL::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default
C2_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
C_ : BALL::QSAR::LibsvmModel
c_ : BALL::RandomNumberGenerator
C_atom_ : BALL::CHPI::CHGroup
C_BACKBONE : BALL::ShiftModel1D
c_factor_ : BALL::BindingPocketProcessor
c_str() : BALL::Substring
Ca : BALL::Element
CADMIUM : BALL::Element
CAESIUM : BALL::Element
CAL_PER_JOULE : BALL::Constant
calcConjugate_() : BALL::GeometricFit
CALCIUM : BALL::Element
calcPrincipalMomentOfInertia_() : BALL::SimpleBase
calculate() : BALL::FermiBaseFunction , BALL::LinearBaseFunction , BALL::VIEW::FDPBDialog , BALL::ScoringBaseFunction
calculate_() : BALL::ConnectivityBase , BALL::Descriptor , BALL::PartialChargeBase , BALL::SimpleBase , BALL::SurfaceBase , BALL::VIEW::FDPBDialog
calculate_hbonds_id_ : BALL::VIEW::MolecularStructure
calculate_ramachandran_ : BALL::VIEW::MolecularStructure
calculate_RMSD_id_ : BALL::VIEW::MolecularStructure
calculate_ss_id_ : BALL::VIEW::MolecularStructure
calculateAbsoluteCoordinates() : BALL::VIEW::Stage
calculateAromaticSystems_() : BALL::Kekuliser
calculateAverageMCC() : BALL::QSAR::ClassificationValidation
calculateAverageSensitivity() : BALL::QSAR::ClassificationValidation
calculateBALLDescriptors() : BALL::QSAR::QSARData
calculateBendEmpiricalForceConstant() : BALL::MMFF94StretchBend
calculateBendEmpiricalReferenceAngle() : BALL::MMFF94StretchBend
calculateBornRadii_() : BALL::GeneralizedBornModel
calculateCoefficientStdErrors() : BALL::QSAR::RegressionValidation
calculateComplementaryBases_() : BALL::VIEW::AddCartoonModel
calculateCreationEnergy_() : BALL::GeneralizedBornModel
calculated_ : BALL::MMFF94VDWParameters
calculateDefaultBijection() : BALL::StructureMapper
calculateDeltas_() : BALL::MMFF94StretchBend
calculateDistances() : BALL::VIEW::AtomDistanceColorProcessor
calculateDistanceScores_() : BALL::Kekuliser
calculateEigenvectors() : BALL::QSAR::PCRModel
calculateEnergy() : BALL::GeneralizedBornModel
calculateEuclDistanceMatrix() : BALL::QSAR::ALLModel
calculateFactors() : BALL::MicroCanonicalMD
calculateFactors_() : BALL::CanonicalMD
calculateFDPB() : BALL::VIEW::MolecularStructure
CalculateFDPBThread : BALL::VIEW::FDPBDialog , BALL::VIEW::CalculateFDPBThread
calculateForceFieldEnergy() : BALL::VIEW::MolecularStructure
calculateFragmentBijection() : BALL::StructureMapper
calculateGuidePoints_() : BALL::VIEW::AddBackboneModel
calculateHBonds() : BALL::VIEW::MolecularStructure
calculateHeuristic_() : BALL::MMFF94Torsion
calculateHSV_() : BALL::VIEW::ColorHSV
calculateIncludedVertices_() : BALL::VIEW::ModifyRepresentationDialog
calculateKernelMatrix() : BALL::QSAR::Kernel
calculateKernelMatrix1() : BALL::QSAR::Kernel
calculateKernelMatrix2() : BALL::QSAR::Kernel
calculateKernelMatrix3() : BALL::QSAR::Kernel
calculateKernelMatrix4() : BALL::QSAR::Kernel
calculateKernelVector() : BALL::QSAR::Kernel
calculateKineticEnergy_() : BALL::SnapShotManager
calculateLinePoints_() : BALL::VIEW::FieldLineCreator
calculateMatrices_() : BALL::CrystalInfo
calculateMean() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
calculateMinSpacing() : BALL::HashGrid3< Item >
calculateModelParts() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
calculateOffsets() : BALL::QSAR::KernelModel , BALL::QSAR::LinearModel , BALL::QSAR::NonLinearModel , BALL::QSAR::RegressionModel
calculateOverallAccuracy() : BALL::QSAR::ClassificationValidation
calculateOverallMCC() : BALL::QSAR::ClassificationValidation
calculatePEOE() : BALL::PartialChargeProcessor
calculatePotential() : BALL::GeneralizedBornModel
calculateProbabilities() : BALL::QSAR::BayesModel , BALL::QSAR::NBModel , BALL::QSAR::SNBModel
calculateQOF() : BALL::QSAR::RegressionValidation
calculateRamachandranPlot() : BALL::VIEW::MolecularStructure
calculateRange() : BALL::PiecewiseFunction
calculateReactionFieldEnergy() : BALL::FDPB
calculateRelativeCoordinates() : BALL::VIEW::Stage
calculateRGB_() : BALL::VIEW::ColorHSV
calculateRibbonEllipse_() : BALL::VIEW::AddBackboneModel
calculateRibbonPoints_() : BALL::VIEW::AddBackboneModel
calculateRMSD() : BALL::AtomBijection , BALL::StructureMapper , BALL::VIEW::MolecularStructure
calculateSBTIJK() : BALL::MMFF94StretchBend
calculateScore() : BALL::Lipophilic , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::VanDerWaals , BALL::ScoringComponent , BALL::ScoringFunction , BALL::AromaticRingStacking , BALL::BuriedPolar , BALL::CHPI , BALL::HydrogenBond
calculateSD() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
calculateSecondaryStructure() : BALL::VIEW::MolecularStructure
calculateSolvationEnergy() : BALL::GeneralizedBornModel
calculateSSSR() : BALL::RingPerceptionProcessor
calculateStdErr() : BALL::QSAR::GPModel , BALL::QSAR::Model
calculateStretchConstant() : BALL::MMFF94StretchBend
calculateStretchR0() : BALL::MMFF94StretchBend
calculateT_() : BALL::BindingPocketProcessor
calculateTDR() : BALL::QSAR::ClassificationValidation
calculateTransferEnergy_() : BALL::GeneralizedBornModel
calculateTransformation() : BALL::StructureMapper
calculateTubePoints_() : BALL::VIEW::AddBackboneModel
calculateVDWEnergy_() : BALL::VanDerWaals
calculateVectors_() : BALL::VIEW::Camera
calculateWeightedKernelMatrix() : BALL::QSAR::Kernel
calculateWeightedSensitivity() : BALL::QSAR::ClassificationValidation
calculateWeights() : BALL::QSAR::ALLModel , BALL::QSAR::KNNModel
calculateXX() : BALL::QSAR::ALLModel
calculateXY() : BALL::QSAR::ALLModel
CALCULATION__BOEHM : BALL::RotationalEntropyLoss
CALCULATION__COULOMB : BALL::PolarSolvation
CALCULATION__EEF1 : BALL::PolarSolvation
CALCULATION__FRESNO : BALL::PolarSolvation
CALCULATION__FROZEN_GLYCOSIDIC_BONDS : BALL::RotationalEntropyLoss
CALCULATION__FULL_CYCLE : BALL::PolarSolvation
CALCULATION__FULL_CYCLE_FOCUSED : BALL::PolarSolvation
CALCULATION__FULL_LJ_POTENTIAL : BALL::VanDerWaals
CALCULATION__FULL_SLICK : BALL::PolarSolvation
CALCULATION__GLYCOSIDIC_BONDS : BALL::RotationalEntropyLoss
CALCULATION__GLYCOSIDIC_CONTRIBUTION : BALL::RotationalEntropyLoss
CALCULATION__NONE : BALL::NonpolarSolvation
CALCULATION__ORIGINAL : BALL::RotationalEntropyLoss
CALCULATION__PCM : BALL::NonpolarSolvation
CALCULATION__SOFTENED_LJ_POTENTIAL_LOG : BALL::VanDerWaals
CALCULATION__SOFTENED_LJ_POTENTIAL_SIMPLE : BALL::VanDerWaals
CALCULATION__UHLIG : BALL::NonpolarSolvation
CALCULATION__VDW_INTERACTION : BALL::NonpolarSolvation
CALCULATION__VDW_SOLVENT : BALL::NonpolarSolvation
calculation_method_ : BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::VanDerWaals
CalculationMethod : BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::VanDerWaals
CALIFORNIUM : BALL::Element
call_time_map_ : BALL::SMARTSPredicate
caller_ : BALL::SimpleDownloaderHelper::BasicHelper
callESummary() : BALL::VIEW::PubChemDialog
Camera() : BALL::VIEW::Camera
camera : BALL::VIEW::SetCamera
camera_ : BALL::VIEW::Stage , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
CAMERA__CENTER : BALL::VIEW::MolecularControl
camera_offset_ : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
canBeCopied() : BALL::ReducedSurface , BALL::TriangulatedSurface
cancel_ : BALL::VIEW::SnapshotVisualisationDialog
cancel_animation_action_ : BALL::VIEW::Scene
cancelPressed() : BALL::VIEW::DockDialog , BALL::VIEW::SnapshotVisualisationDialog
candidates : BALL::BindingPocketProcessor
candidates_grid_ : BALL::BindingPocketProcessor
canHandle() : BALL::PluginHandler , BALL::VIEW::MolecularFileDialog , BALL::VIEW::ModularWidget , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::DatasetControl , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
CannotWrite() : BALL::File::CannotWrite
CanonicalMD() : BALL::CanonicalMD
canonizePath() : BALL::FileSystem
canUseMeshShortcut_() : BALL::VIEW::ColorProcessor , BALL::VIEW::ResidueNumberColorProcessor , BALL::VIEW::ChainColorProcessor , BALL::VIEW::MoleculeColorProcessor , BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::CustomColorProcessor , BALL::VIEW::SecondaryStructureColorProcessor , BALL::VIEW::ResidueTypeColorProcessor
canvas_ : BALL::VIEW::CanvasWidget
CanvasWidget() : BALL::VIEW::CanvasWidget
canWidget_ : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget
cap_ : BALL::VIEW::ClippingPlane
capacity() : BALL::PDBRecords
capacity_ : BALL::HashSet< Key >
capping_color_ : BALL::VIEW::ClippingPlane
cappingColorPressed() : BALL::VIEW::StageSettings
cappingEnabled() : BALL::VIEW::ClippingPlane
CARBON : BALL::Element
CARBONEUM : BALL::Element
carbonyl_influences_amide_field_ : BALL::EFShiftProcessor
care_for_SS_ : BALL::VIEW::AddBackboneModel
carlsonEllipticalIntegral1_() : BALL::JohnsonBoveyShiftProcessor
carlsonEllipticalIntegral2_() : BALL::JohnsonBoveyShiftProcessor
cart2frac_ : BALL::CrystalInfo
cartoonDNABaseRadiusChanged() : BALL::VIEW::ModelSettingsDialog
cartoonDNAHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
cartoonDNALadderRadiusChanged() : BALL::VIEW::ModelSettingsDialog
cartoonHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
cartoonStrandArrowWidthChanged() : BALL::VIEW::ModelSettingsDialog
cartoonStrandHeightChanged() : BALL::VIEW::ModelSettingsDialog
cartoonStrandWidthChanged() : BALL::VIEW::ModelSettingsDialog
cartoonTubeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
CASE_INSENSITIVE : BALL::String
CASE_SENSITIVE : BALL::String
category : BALL::CIFFile::SaveFrame
cation : BALL::MMFF94AtomTyper::AromaticType
cation_atoms_ : BALL::MMFF94AtomTyper
cause_ : BALL::VIEW::ButtonEvent
CCP4File() : BALL::CCP4File
CCW_AL : BALL::SmartsParser
CCW_AL_OR_UNSPECIFIED : BALL::SmartsParser
CCW_DEFAULT : BALL::SmartsParser
CCW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
CCW_OH : BALL::SmartsParser
CCW_OH_OR_UNSPECIFIED : BALL::SmartsParser
CCW_SP : BALL::SmartsParser
CCW_SP_OR_UNSPECIFIED : BALL::SmartsParser
CCW_TB : BALL::SmartsParser
CCW_TB_OR_UNSPECIFIED : BALL::SmartsParser
CCW_TH : BALL::SmartsParser
CCW_TH_OR_UNSPECIFIED : BALL::SmartsParser
Cd : BALL::Element
cd_ : BALL::RandomNumberGenerator
Ce : BALL::Element
cel_texture_ : BALL::VIEW::GLRenderer
cell_dimension_ : BALL::CCP4File
cell_dimensions_ : BALL::CrystalInfo
cell_scaling_ : BALL::DSN6File
CellType : BALL::CrystalGenerator
center_ : BALL::GeometricCenterProcessor , BALL::RSFace , BALL::VIEW::LabelModel
CENTER_CAMERA : BALL::VIEW::CompositeMessage
center_camera_action_ : BALL::VIEW::MolecularControl
center_camera_id_ : BALL::VIEW::MolecularStructure
center_data : BALL::QSAR::InputConfiguration
center_of_torus_ : BALL::RSEdge
center_processor_ : BALL::VIEW::LabelModel , BALL::CrystalGenerator
center_y : BALL::QSAR::InputConfiguration
centerCamera() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
centerData() : BALL::QSAR::QSARData
centering() : BALL::QSAR::Statistics
centerOfProbe() : BALL::RSComputer
central_moments : BALL::Spectrum< DataT, PeakT, PositionT >
centre_ : BALL::CHPI::AromaticRing
CERIUM : BALL::Element
ces_parsers_ : BALL::GAFFTypeProcessor
CESelementConnectionPredicate() : BALL::GAFFCESParser::CESelementConnectionPredicate
CESelementPredicate() : BALL::GAFFCESParser::CESelementPredicate
CESPredicate() : BALL::GAFFCESParser::CESPredicate
cesstring_ : BALL::GAFFCESParser
CESwildcards : BALL::GAFFCESParser::CESPredicate
CESwildcardsConnectionPredicate() : BALL::GAFFCESParser::CESwildcardsConnectionPredicate
CESwildcardsPredicate() : BALL::GAFFCESParser::CESwildcardsPredicate
Cf : BALL::Element
Chain() : BALL::Chain
chain : BALL::MOL2File::SubstructureStruct , BALL::PDB::Structure::AtomEntry
chain_ : BALL::NMRStarFile::BALLToBMRBMapper
chain_ID : BALL::PDB::Residue , BALL::PDB::RecordDBREF , BALL::PDB::RecordSEQRES
chain_id : BALL::PDB::AdditionalAtomInfo
chain_ID_ : BALL::PDBFile
chain_residue_names : BALL::PDB::Structure
ChainColorProcessor() : BALL::VIEW::ChainColorProcessor
ChainIteratorTraits() : BALL::ChainIteratorTraits
chainname_ : BALL::Peptides::PeptideBuilder
chains_ : BALL::SDGenerator
changeAllXToY_() : BALL::SecondaryStructureProcessor
changeAtomElement_() : BALL::VIEW::EditableScene
changeBondOrder_() : BALL::VIEW::EditableScene
CHANGED__TYPE : BALL::VIEW::EditableScene::EditOperation
changed_color_processor_ : BALL::VIEW::Representation
CHANGED_COMPOSITE : BALL::VIEW::CompositeMessage
CHANGED_COMPOSITE_HIERARCHY : BALL::VIEW::CompositeMessage
changed_selection_color_ : BALL::VIEW::DisplayProperties
changedEditThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
changedNAMode_() : BALL::VIEW::ModelSettingsDialog
changedRangeMax() : BALL::VIEW::RaytraceableContourSurfaceDialog
changedRangeMin() : BALL::VIEW::RaytraceableContourSurfaceDialog
changedRangeSteps() : BALL::VIEW::RaytraceableContourSurfaceDialog
changeDrawingMode_() : BALL::VIEW::ModifyRepresentationDialog
changeDrawingModeTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
changedSliderThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
changeElement_() : BALL::VIEW::EditableScene
changeEvent() : BALL::Mainframe
changeLock() : BALL::VIEW::ServerWidget
changeMode_() : BALL::VIEW::EditSingleShortcut
changeProteinOrientation_() : BALL::GeometricFit
changeShortcut() : BALL::VIEW::ShortcutRegistry
changeToUserHomeDir() : BALL::Directory
ChannelFormat() : BALL::VIEW::ChannelFormat
ChannelID : BALL::VIEW::ChannelFormat
channels : BALL::VIEW::PixelFormat
ChannelType : BALL::VIEW::ChannelFormat
char_count : BALL::ExpressionParser::State , BALL::SmartsParser::State , BALL::SmilesParser::State
CHARACTER_CLASS__ASCII_ALPHA : BALL::String
CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
CHARACTER_CLASS__ASCII_FLOAT : BALL::String
CHARACTER_CLASS__ASCII_LOWER : BALL::String
CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
CHARACTER_CLASS__ASCII_UPPER : BALL::String
CHARACTER_CLASS__QUOTES : BALL::String
CHARACTER_CLASS__WHITESPACE : BALL::String
charge : BALL::MOL2File::AtomStruct , BALL::MOLFile::AtomStruct , BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordHETATM , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ
CHARGE : BALL::SmartsParser::SPAtom
charge_ : BALL::Atom
CHARGE_DISTRIBUTION : BALL::FDPB::Option , BALL::FDPB::Default
charge_factor_ : BALL::EFShiftProcessor
charge_map_ : BALL::EFShiftProcessor
charge_processor_ : BALL::MMFF94 , BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
charge_rule_processor_ : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
charge_type : BALL::MOL2File::MoleculeStruct
ChargeRuleProcessor() : BALL::ChargeRuleProcessor
charges_ : BALL::Templates , BALL::ElectrostaticPotentialCalculator
charmm_ : BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::MolecularStructure
charmm_dialog_ : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog , BALL::VIEW::MolecularStructure
charmm_extra_block_A_ : BALL::DCDFile
charmm_extra_block_B_ : BALL::DCDFile
CHARMM_FF : BALL::VIEW::MolecularStructure
charmm_ff_id_ : BALL::VIEW::MolecularStructure
CharmmBend() : BALL::CharmmBend
CharmmConfigurationDialog() : BALL::VIEW::CharmmConfigurationDialog
CharmmEEF1() : BALL::CharmmEEF1
CharmmFF() : BALL::CharmmFF
CharmmImproperTorsion() : BALL::CharmmImproperTorsion
CharmmNonBonded() : BALL::CharmmNonBonded
CharmmStretch() : BALL::CharmmStretch
CharmmTorsion() : BALL::CharmmTorsion
chdir_() : BALL::Directory
check() : BALL::SolventExcludedSurface
CHECK_AFTER_ITERATIONS : BALL::FDPB::Option , BALL::FDPB::Default
check_duplicate_keys_ : BALL::INIFile
CHECK_RESIDUE : BALL::VIEW::MolecularTaskMessage
check_structure_id_ : BALL::VIEW::MolecularStructure
checkable_ : BALL::VIEW::GenericControl
checkActivityIDs() : BALL::QSAR::QSARData
checkApplyButton_() : BALL::VIEW::GridVisualizationDialog , BALL::VIEW::ModifyRepresentationDialog
checkAtomPositions() : BALL::ResidueChecker
checkAtomType() : BALL::MMFF94
checkCharge() : BALL::ResidueChecker
checkCompleteness() : BALL::ResidueChecker
checkDrawingPrecision_() : BALL::VIEW::DisplayProperties
checkEdges_() : BALL::RingPerceptionProcessor
checkforDiscreteY() : BALL::QSAR::QSARData
checkGAFFProperties() : BALL::GAFFCESParser::APSMatcher
checkGL() : BALL::VIEW::GLRenderWindow
checkHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkInclude_() : BALL::VIEW::ModifyRepresentationDialog
checkLoop() : BALL::VIEW::SnapshotVisualisationDialog
checkMenu() : BALL::VIEW::DatasetController , BALL::VIEW::DisplayProperties , BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile , BALL::VIEW::LabelDialog , BALL::VIEW::MolecularFileDialog , BALL::VIEW::PubChemDialog , BALL::VIEW::UndoManagerDialog , BALL::VIEW::ModularWidget , BALL::VIEW::DatasetControl , BALL::VIEW::DockingController , BALL::VIEW::EditableScene , BALL::VIEW::FileObserver , BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::VIEW::TestFramework , BALL::VIEW::DemoTutorialDialog
checkMenus() : BALL::VIEW::MainControl
checkName() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkNoLoop() : BALL::VIEW::SnapshotVisualisationDialog
checkObjectHeader() : BALL::PersistenceManager
checkObjectPointerArrayHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectPointerArrayTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectPointerHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectReferenceHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectTrailer() : BALL::PersistenceManager
checkOverlap_() : BALL::SDGenerator
checkPrimitiveHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkPrimitiveTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkProbe() : BALL::RSComputer
checkResidue() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
checkRock() : BALL::VIEW::SnapshotVisualisationDialog
checkStorableHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStorableTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStreamHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStreamTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkTemplate() : BALL::ResidueChecker
checkTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkValidity() : BALL::ComposedEnergyProcessor
chemical_environment : BALL::GAFFTypeProcessor::TypeDefinition
chemical_formula : BALL::PDB::RecordFORMUL
chemical_name : BALL::PDB::RecordHETNAM
chemical_units : BALL::NMRStarFile::MolecularSystem
ChemicalUnit() : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
ChemScoreMetal() : BALL::ChemScoreMetal
CHGroup() : BALL::CHPI::CHGroup
chi1 : BALL::Rotamer
chi2 : BALL::Rotamer
chi3 : BALL::Rotamer
chi4 : BALL::Rotamer
CHI__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
CHI__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
CHI__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
child_ : BALL::Composite::ChildCompositeIteratorTraits , BALL::ResourceEntry
child_entries_ : BALL::VIEW::PluginDialog
ChildCompositeConstIterator : BALL::Composite
ChildCompositeConstReverseIterator : BALL::Composite
ChildCompositeIterator : BALL::Composite
ChildCompositeIteratorTraits : BALL::Composite , BALL::Composite::ChildCompositeIteratorTraits
ChildCompositeReverseIterator : BALL::Composite
children : BALL::ExpressionParser::SyntaxTree , BALL::GAFFCESParser::CESPredicate
children_ : BALL::ExpressionTree , BALL::ConnectedToPredicate::CTPNode
children_connection_objects_ : BALL::VIEW::ConnectionObject
chiral : BALL::MOLFile::CountsStruct
CHIRAL_CLASS_UNSPECIFIED : BALL::SmartsParser
chiral_class_value : BALL::SmartsParser::SPAtom::PropertyValue
ChiralClass : BALL::SmartsParser , BALL::SmilesParser
ChiralDef : BALL::SmilesParser
CHIRALITY : BALL::SmartsParser::SPAtom
chirality_ : BALL::SmilesParser::SPAtom
CHLORINE : BALL::Element
CHOOSE_FF : BALL::VIEW::MainControl
CHOOSE_MODEL : BALL::PDBFile::Option , BALL::PDBFile::Default
chooseAmberFF() : BALL::VIEW::MolecularStructure
chooseCharmmFF() : BALL::VIEW::MolecularStructure
chooseColor() : BALL::VIEW::ContourSurfaceDialog , BALL::VIEW::ColorButton
chooseDCDFile() : BALL::VIEW::MolecularDynamicsDialog
chooseFile() : BALL::VIEW::FileObserver
chooseForceField() : BALL::VIEW::MolecularStructure
chooseMMFF94() : BALL::VIEW::MolecularStructure
choosePressed() : BALL::VIEW::ModifyRepresentationDialog
chooseSolventFile() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::MMFF94ConfigurationDialog
CHPI : BALL::SLICKEnergy::Option , BALL::SLICKEnergy::Default , BALL::SLICKScore::Option , BALL::SLICKScore::Default
CHROMIUM : BALL::Element
CHX_ANGLE_LOWER : BALL::CHPI::Option , BALL::CHPI::Default
CHX_angle_lower_ : BALL::CHPI
ci_ptr_ : BALL::CrystalGenerator
CIFFile() : BALL::CIFFile
circle0_ : BALL::RSEdge
circle1_ : BALL::RSEdge
circle_ : BALL::SASEdge , BALL::SESEdge
Cl : BALL::Element
clas_model : BALL::QSAR::ClassificationValidation
CLASH_FACTOR : BALL::BindingPocketProcessor::Option , BALL::BindingPocketProcessor::Default
class_ : BALL::VIEW::PyWidget
class_names_ : BALL::QSAR::QSARData
class_results_ : BALL::QSAR::ClassificationValidation
classes_to_files_ : BALL::VIEW::HelpViewer
classification : BALL::PDB::RecordHEADER
classification_statistics : BALL::QSAR::Registry
ClassificationModel() : BALL::QSAR::ClassificationModel
ClassificationValidation : BALL::QSAR::ClassificationModel , BALL::QSAR::Model , BALL::QSAR::QSARData , BALL::QSAR::ClassificationValidation
CLAVERIE_FILENAME : BALL::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default
ClaverieParameter() : BALL::ClaverieParameter
clayer_grid_ : BALL::BindingPocketProcessor
clean() : BALL::ReducedSurface , BALL::SolventExcludedSurface
cleanContactFaces() : BALL::SolventExcludedSurface
cleanEdges() : BALL::SolventExcludedSurface
cleanSingularToricFace() : BALL::SolventExcludedSurface
cleanSphericFaces() : BALL::SolventExcludedSurface
cleanToricFace() : BALL::SolventExcludedSurface
cleanToricFaces() : BALL::SolventExcludedSurface
cleanUpNodes_() : BALL::ConnectedToPredicate
cleanVertices() : BALL::SolventExcludedSurface
clear() : BALL::LogStream , BALL::Client , BALL::Composite , BALL::MolecularInformation , BALL::MoleculeObjectCreator , BALL::Object , BALL::ObjectCreator , BALL::NamedProperty , BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::Bit , BALL::BitVector , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::HashSet< Key > , BALL::Options , BALL::Quadruple< T1, T2, T3, T4 > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::RegularExpression , BALL::String , BALL::Substring , BALL::Triple< T1, T2, T3 > , BALL::ComposedEnergyProcessor , BALL::EnergyProcessor , BALL::CCP4File , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::CIFFile::Datablock , BALL::DCDFile , BALL::DSN6File , BALL::INIFile , BALL::LineBasedFile , BALL::NMRStarFile::Sample::Component , BALL::NMRStarFile::Sample , BALL::NMRStarFile::EntryInformation , BALL::NMRStarFile::MonomericPolymer::HomologDB , BALL::NMRStarFile::MonomericPolymer , BALL::NMRStarFile::MolecularSystem::RelatedDB , BALL::NMRStarFile::MolecularSystem::ChemicalUnit , BALL::NMRStarFile::MolecularSystem , BALL::NMRStarFile::BALLToBMRBMapper , BALL::NMRStarFile , BALL::Parameters , BALL::ParameterSection , BALL::PDB::Residue , BALL::PDB::RecordCONECT , BALL::PDB::RecordHELIX , BALL::PDB::RecordMASTER , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTURN , BALL::PDB::BookKeeping , BALL::PDB::Structure , BALL::PDBFile , BALL::PDBInfo , BALL::PDBRecords , BALL::ResourceEntry , BALL::ResourceFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Expression , BALL::ExpressionParser::SyntaxTree , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Element , BALL::PTE_ , BALL::Residue , BALL::SecondaryStructure , BALL::Selector , BALL::ConnectedToPredicate , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::RombergIntegrator< Function, DataType > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::AmberFF , BALL::AmberNonBonded , BALL::GAFFCESParser::CESPredicate , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::ForceField , BALL::PeriodicBoundary , BALL::RuleEvaluator , BALL::RuleProcessor , BALL::SnapShot , BALL::SnapShotManager , BALL::MMFF94 , BALL::MMFF94NonBonded , BALL::MMFF94ParametersBase , BALL::MMFF94AtomTypeEquivalences , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::MMFF94ChargeProcessor , BALL::AtomTypes , BALL::CharmmEEF1 , BALL::CosineTorsion , BALL::ForceFieldParameters , BALL::LennardJones , BALL::Potential1210 , BALL::QuadraticAngleBend , BALL::QuadraticBondStretch , BALL::QuadraticImproperTorsion , BALL::ResidueTorsions , BALL::Templates , BALL::ShiftModel , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModule , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::ScoringComponent , BALL::ScoringFunction , BALL::ScoringTypes , BALL::BuriedPolar , BALL::CHPI , BALL::HydrogenBond , BALL::Lipophilic , BALL::ChemScoreMetal , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::VanDerWaals , BALL::SLICKEnergy , BALL::SLICKScore , BALL::ClaverieParameter , BALL::GeneralizedBornModel , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::PCMCavFreeEnergyProcessor , BALL::PierottiCavFreeEnergyProcessor , BALL::ReissCavFreeEnergyProcessor , BALL::SolventDescriptor , BALL::SolventParameter , BALL::UhligCavFreeEnergyProcessor , BALL::AssignBondOrderProcessor , BALL::AssignBondOrderProcessor::Solution_ , BALL::AssignBondOrderProcessor::PQ_Entry_ , BALL::ConnectedComponentsProcessor , BALL::Kekuliser , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFParameter , BALL::RDFSection , BALL::ReducedSurface , BALL::RingAnalyser , BALL::RotamerLibrary , BALL::SDGenerator , BALL::SmartsMatcher::RecStructCore_ , BALL::SmartsMatcher::RecStruct_ , BALL::SmartsParser , BALL::SolventAccessibleSurface , BALL::SolventExcludedSurface , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::Timer , BALL::VIEW::ColorExtension2 , BALL::VIEW::MultiColorExtension , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::Dataset , BALL::VIEW::Vertex , BALL::VIEW::Vertex2 , BALL::VIEW::ClippingPlane , BALL::VIEW::CompositeManager , BALL::VIEW::ConnectionObject , BALL::VIEW::GeometricObject , BALL::VIEW::MainControl , BALL::VIEW::ModularWidget , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::ServerWidget , BALL::VIEW::ShortcutRegistry , BALL::VIEW::Camera , BALL::VIEW::Stage , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::ColorProcessor , BALL::VIEW::HBondModelProcessor , BALL::VIEW::ModelProcessor , BALL::VIEW::AddSurfaceModel , BALL::VIEW::Box , BALL::VIEW::Disc , BALL::VIEW::Label , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::VIEW::MultiLine , BALL::VIEW::Point , BALL::VIEW::SimpleBox , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::GLDisplayList , BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::MeshBuffer , BALL::VIEW::VRMLRenderer , BALL::VIEW::GeometricControl , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::VIEW::SDWidget
clear_() : BALL::MOL2File , BALL::Atom , BALL::Bond , BALL::PDBAtom , BALL::VIEW::GeometricObject , BALL::VIEW::AddBackboneModel
clear_animation_action_ : BALL::VIEW::Scene
clear_selection_action_ : BALL::VIEW::MainControl
clearAtomGrid() : BALL::VIEW::ColorProcessor
clearBonds() : BALL::GAMESSLogFile
clearBuffer() : BALL::SnapShotManager , BALL::VIEW::MeshBuffer
clearClipboard() : BALL::VIEW::MolecularControl
clearComposites() : BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::ModelProcessor , BALL::VIEW::AddSurfaceModel
clearData() : BALL::VIEW::MainControl
clearEntries() : BALL::VIEW::AssignBondOrderResultsDialog , BALL::VIEW::PubChemDialog
clearFields_() : BALL::VIEW::LightSettings
clearGeometricObjects() : BALL::VIEW::Representation
clearHistory_() : BALL::VIEW::PyWidget
clearKeySequences() : BALL::VIEW::ShortcutRegistry
clearLastPtr() : BALL::AutoDeletable
clearLightSources() : BALL::VIEW::Stage
clearNames_() : BALL::VIEW::GLRenderer
clearNormals() : BALL::TSurface< T >
clearParameters() : BALL::CIFFile , BALL::GAMESSDatFile
clearParent_() : BALL::VIEW::ConnectionObject
clearProperty() : BALL::PropertyManager
clearRecordedAnimation() : BALL::VIEW::Scene
clearScript() : BALL::VIEW::PyWidget
clearSelection() : BALL::VIEW::MainControl
clearSelector() : BALL::VIEW::MolecularControl
ClearShiftProcessor() : BALL::ClearShiftProcessor
clearStartupScript() : BALL::VIEW::PythonSettings
clearStatusBarText_() : BALL::VIEW::MainControl
clearSticks() : BALL::Spectrum< DataT, PeakT, PositionT >
clearTriangles() : BALL::TSurface< T >
clearUsedAtoms_() : BALL::VIEW::AtomBondModelBaseProcessor
clearVertexBuffersFor() : BALL::VIEW::GLRenderer
clearVertices() : BALL::TSurface< T >
clicked() : BALL::VIEW::FDPBDialog
Client() : BALL::Client
clipboard_id_ : BALL::VIEW::MolecularControl
clipping_plane_ : BALL::VIEW::ClippingDialog
clipping_plane_context_menu_ : BALL::VIEW::GeometricControl
clipping_planes_ : BALL::VIEW::RepresentationManager , BALL::VIEW::POVRenderer
ClippingDialog() : BALL::VIEW::ClippingDialog
ClippingPlane() : BALL::VIEW::ClippingPlane
clone() : BALL::Composite
clone_() : BALL::Composite , BALL::ResourceEntry
cloneBond() : BALL::Atom
close() : BALL::File , BALL::ResourceFile
close_pressed() : BALL::VIEW::PeptideDialog , BALL::VIEW::UndoManagerDialog
closeClicked() : BALL::VIEW::DockResultDialog
closeEvent() : BALL::VIEW::SnapshotVisualisationDialog
clusterRings_() : BALL::RingAnalyser
Cm : BALL::Element
cm_ : BALL::RandomNumberGenerator
Co : BALL::Element
coarsePenalty() : BALL::AssignBondOrderProcessor::PQ_Entry_
COBALT : BALL::Element
code_ : BALL::PDBFile
coefficient_stderr_ : BALL::QSAR::RegressionValidation
coefficients_ : BALL::PiecewiseFunction
COIL : BALL::SecondaryStructure
coil_color_ : BALL::VIEW::SecondaryStructureColorProcessor
col_averages_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
col_axis_ : BALL::CCP4File
col_spacing_ : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
COLLAPSE_ALL : BALL::VIEW::MolecularControl
collapseAll() : BALL::VIEW::MolecularControl
collectAromaticAtoms_() : BALL::Kekuliser
collectAtoms_() : BALL::ForceField
collectBonds_() : BALL::MMFF94
collectClasses_() : BALL::VIEW::HelpViewer
collectHeteroAtomTypes() : BALL::MMFF94AtomTyper
collectPositions() : BALL::VIEW::AddBackboneModel
collectRecursive_() : BALL::VIEW::Representation
collectRingBonds_() : BALL::VIEW::AddBallAndStickModel
collectRings_() : BALL::MMFF94
collectSystems_() : BALL::Kekuliser
color2_ : BALL::VIEW::ColorExtension2
color_ : BALL::VIEW::GeometricObject , BALL::VIEW::LightSource , BALL::VIEW::LabelModel , BALL::VIEW::MeshBuffer , BALL::VIEW::ColorButton
color_index_ : BALL::VIEW::POVRenderer
color_map_ : BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::ElementColorProcessor , BALL::VIEW::POVRenderer
color_menu_ : BALL::VIEW::MolecularControl
color_number_ : BALL::VIEW::ColorMap
color_processor_ : BALL::VIEW::Representation
color_strings_ : BALL::VIEW::POVRenderer
ColorButton() : BALL::VIEW::ColorButton
colorByCustomColor_() : BALL::VIEW::ModifyRepresentationDialog
colorByGrid_() : BALL::VIEW::ModifyRepresentationDialog
colorChanged() : BALL::VIEW::ColorButton
ColorExtension2() : BALL::VIEW::ColorExtension2
colorGeometricObject_() : BALL::VIEW::AtomDistanceColorProcessor
ColorHSV : BALL::VIEW::ColorRGBA , BALL::VIEW::ColorHSV
coloring_method_ : BALL::VIEW::Representation , BALL::VIEW::CreateRepresentationMessage
coloring_settings_ : BALL::VIEW::DisplayProperties
coloring_update_enabled_ : BALL::VIEW::Representation
coloringMuteableByDisplayProperties() : BALL::VIEW::ModelInformation
coloringOptionsPressed() : BALL::VIEW::DisplayProperties
ColoringSettingsDialog() : BALL::VIEW::ColoringSettingsDialog
coloringUpdateEnabled() : BALL::VIEW::Representation
coloringUpdatesChanged() : BALL::VIEW::DisplayProperties
ColorMap : BALL::VIEW::POVRenderer , BALL::VIEW::ColorMap
colorMeshFromGrid_() : BALL::VIEW::AtomDistanceColorProcessor , BALL::VIEW::ColorProcessor
colorPressed() : BALL::VIEW::LightSettings , BALL::VIEW::StageSettings
ColorProcessor() : BALL::VIEW::ColorProcessor
ColorRGBA : BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA
colors : BALL::VIEW::MultiColorExtension
colors_ : BALL::VIEW::PositionColorProcessor , BALL::VIEW::ColorTable , BALL::VIEW::InterpolateColorProcessor
ColorTable() : BALL::VIEW::ColorTable
ColorUnit() : BALL::VIEW::ColorUnit
ColorUnitHue() : BALL::VIEW::ColorUnitHue
COLUMN_ID__Properties : BALL::VIEW::GeometricControl
COLUMN_ID__TYPE : BALL::VIEW::GeometricControl
column_names_ : BALL::QSAR::QSARData
columnCount() : BALL::VIEW::ShortcutTableModel
ColumnID : BALL::VIEW::GeometricControl
ColumnIteratorTraits() : BALL::ColumnIteratorTraits< valuetype, mtraits >
combineDatapoints() : BALL::MPISupport
combo_box_ : BALL::VIEW::PyWidget
ComboBoxDelegate() : BALL::VIEW::ComboBoxDelegate
comm_size_ : BALL::MPISupport
Command : BALL::Client
COMMAND__SEND_OBJECT : BALL::Client
COMMAND__UNKOWN : BALL::Client
comment : BALL::MOL2File::SetStruct , BALL::MOL2File::MoleculeStruct , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordHELIX , BALL::PDB::RecordMODRES , BALL::PDB::RecordSEQADV , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT , BALL::VIEW::Hotkey , BALL::MOL2File::SubstructureStruct
comment_ : BALL::XYZFile
comment_format : BALL::VIEW::PythonHighlighter
comment_pattern : BALL::VIEW::PythonHighlighter
comments_ : BALL::MOL2File
common_name : BALL::NMRStarFile::MonomericPolymer
comp_ptr_ : BALL::TMatrix4x4< T >
Comparator() : BALL::Comparator< T >
compare() : BALL::Object , BALL::String
Compare_() : BALL::DockResult::Compare_ , BALL::VIEW::DockResultDialog::Compare_
compare_mode_ : BALL::String
compare_record_type_format_ : BALL::PDBFile
compareAscendingly_() : BALL::String
compareChains_() : BALL::SDGenerator
compareChildren_() : BALL::ExpressionTree
compareDescendingly_() : BALL::String
CompareMode : BALL::String
compile_ : BALL::VIEW::GLDisplayList
compilePattern() : BALL::VIEW::PythonHighlighter
compilePattern_() : BALL::RegularExpression
complement_selection_action_ : BALL::VIEW::MainControl
complementary_bases_ : BALL::VIEW::AddCartoonModel
complementSelection() : BALL::VIEW::MainControl
complementSelectionHelper_() : BALL::VIEW::MainControl
complete_prefix_ : BALL::VIEW::PyWidget
completionSelected_() : BALL::VIEW::PyWidget
Complex : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TFFT1D< ComplexTraits >
complex_ : BALL::NonpolarSolvation
ComplexPrecision : BALL::FloatTraits , BALL::LongDoubleTraits , BALL::DoubleTraits
ComplexVector : BALL::TFFT1D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TFFT2D< ComplexTraits >
Component : BALL::ConnectedComponentsProcessor , BALL::NMRStarFile::Sample::Component
component_description : BALL::PDB::RecordCOMPND
component_grouping_ : BALL::SmartsParser
component_name : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
component_no_ : BALL::SmartsParser::SPNode , BALL::SmartsParser
component_number : BALL::PDB::RecordFORMUL
components : BALL::NMRStarFile::Sample
components_ : BALL::ComposedEnergyProcessor , BALL::ScoringFunction , BALL::ConnectedComponentsProcessor , BALL::ForceField
ComponentVector : BALL::ConnectedComponentsProcessor
ComposedEnergyProcessor() : BALL::ComposedEnergyProcessor
composite : BALL::VIEW::MolecularControl::MyTreeWidgetItem
Composite() : BALL::Composite
composite_ : BALL::VIEW::Dataset , BALL::VIEW::CompositeProperties , BALL::VIEW::CompositeMessage , BALL::VIEW::BALLThread , BALL::VIEW::GeometricObject
COMPOSITE__PROPERTIES : BALL::VIEW::MolecularControl
composite_hashmap_ : BALL::VIEW::ServerWidget::BALLViewServer
composite_iterator_ : BALL::CompositeIteratorTraits
composite_manager_ : BALL::VIEW::MainControl
composite_name_ : BALL::VIEW::CompositeMessage
composite_properties_action_ : BALL::VIEW::MolecularControl
composite_set_ : BALL::VIEW::CompositeManager
composite_to_item_ : BALL::VIEW::MolecularControl
composite_to_position_ : BALL::VIEW::PositionColorProcessor
CompositeConstIterator : BALL::Composite , BALL::VIEW::CompositeManager
CompositeConstReverseIterator : BALL::Composite
CompositeHashMap : BALL::VIEW::ServerWidget::BALLViewServer
CompositeIterator : BALL::VIEW::CompositeManager , BALL::Composite
CompositeIteratorTraits : BALL::Composite , BALL::Composite::CompositeIteratorTraits , BALL::CompositeIteratorTraits , BALL::Composite::CompositeIteratorTraits
CompositeManager() : BALL::VIEW::CompositeManager
CompositeMessage() : BALL::VIEW::CompositeMessage
CompositeMessageType : BALL::VIEW::CompositeMessage
CompositeProperties() : BALL::VIEW::CompositeProperties
compositeProperties() : BALL::VIEW::MolecularControl
CompositeReverseIterator : BALL::Composite
composites_ : BALL::VIEW::CreateRepresentationMessage , BALL::VIEW::Representation , BALL::VIEW::DemoTutorialDialog , BALL::VIEW::ColorProcessor
composites_locked_ : BALL::VIEW::MainControl
composites_locked_mutex_ : BALL::VIEW::MainControl
compositesAreLocked() : BALL::VIEW::MainControl
CompositeSet : BALL::VIEW::ColorProcessor
compute() : BALL::ZagrebIndex , BALL::Descriptor , BALL::AtomInformationContent , BALL::RelNumberOfRotatableSingleBonds , BALL::RelNumberOfRotatableBonds , BALL::VertexAdjacency , BALL::NumberOfHydrogenBondAcceptors , BALL::NumberOfHydrogenBondDonors , BALL::NumberOfHydrophobicAtoms , BALL::RelNegativeVdWSurface , BALL::RelPositivePolarVdWSurface , BALL::RelNegativePolarVdWSurface , BALL::RelPolarVdWSurface , BALL::ReducedSurface , BALL::SolventAccessibleSurface , BALL::SolventExcludedSurface , BALL::TriangulatedSAS , BALL::TriangulatedSES , BALL::VertexAdjacencyEquality , BALL::RelHydrophobicVdWSurface , BALL::RelPositiveVdWSurface
compute_() : BALL::SecondaryStructureProcessor
COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
compute_also_connectivity_ : BALL::AssignBondOrderProcessor
COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::Option , BALL::AssignBondOrderProcessor::Default
compute_also_non_optimal_solutions_ : BALL::AssignBondOrderProcessor
COMPUTE_AREA : BALL::NumericalSAS::Option , BALL::NumericalSAS::Default
compute_shifts_ : BALL::ShiftModel2D , BALL::ShiftModel1D
COMPUTE_SURFACE : BALL::NumericalSAS::Option , BALL::NumericalSAS::Default
COMPUTE_SURFACE_MAP : BALL::NumericalSAS::Option , BALL::NumericalSAS::Default
COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::Option , BALL::NumericalSAS::Default
COMPUTE_VOLUME : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
computeAdjacencyMatrix_() : BALL::SDGenerator
computeAllDescriptors() : BALL::ConnectivityBase , BALL::SimpleBase , BALL::SurfaceBase , BALL::PartialChargeBase
computeAllMoments() : BALL::Spectrum< DataT, PeakT, PositionT >
computeAngularDemand_() : BALL::SDGenerator
computeAngularSeparation_() : BALL::SDGenerator
computeBitSize() : BALL::VIEW::PixelFormat
computeBondOrders() : BALL::VIEW::EditableScene
computeByteSize() : BALL::VIEW::PixelFormat
computeCentre_() : BALL::CHPI::AromaticRing
computeCFS_() : BALL::SDGenerator
computeClaverieParameters() : BALL::PairExpInteractionEnergyProcessor
computeCoreCFS_() : BALL::SDGenerator
computeDefaultPressed() : BALL::VIEW::StageSettings
computeEnergyDifference_() : BALL::PolarSolvation
computeESEnergy_() : BALL::PolarSolvation
computeESInteractionEnergy_() : BALL::PolarSolvation
computeFermiParameters_() : BALL::FermiBaseFunction
computeFullCycle_() : BALL::PolarSolvation
computeHuInvariants() : BALL::Spectrum< DataT, PeakT, PositionT >
computeHuInvariantsDifferences() : BALL::Spectrum< DataT, PeakT, PositionT >
computeIsoContourSurface() : BALL::VIEW::RegularData3DController
computeNextSolution() : BALL::AssignBondOrderProcessor , BALL::VIEW::AssignBondOrderResultsDialog
computeNormalVector_() : BALL::CHPI::AromaticRing
computeProperties_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
computeSettingsFromModelDistance() : BALL::VIEW::StereoSettingsDialog
computeShelleyPriorities_() : BALL::SDGenerator
computeSize() : BALL::VIEW::FrameBufferFormat
computeSphereTesselation_() : BALL::NumericalSAS
computeTilingSetup_() : BALL::VIEW::TilingRenderer
computeTopology() : BALL::TContourSurface< T >::Cube
computeTransformation() : BALL::RMSDMinimizer
computeTriangles() : BALL::TContourSurface< T >
computeVirtualHydrogens_() : BALL::AssignBondOrderProcessor
concentration_max : BALL::NMRStarFile::Sample::Component
concentration_min : BALL::NMRStarFile::Sample::Component
concentration_value : BALL::NMRStarFile::Sample::Component
condition : BALL::NMRStarFile::NMRAtomDataSet , BALL::NMRAtomDataSet , BALL::NMRStarFile::NMRAtomDataSet
conect_atoms : BALL::PDB::Structure
conect_records : BALL::PDB::BookKeeping
ConfigurationReadingError() : BALL::QSAR::Exception::ConfigurationReadingError
Conformation : BALL::ConformationSet
conformation_set_ : BALL::DockResult , BALL::VIEW::DockingFinishedMessage
ConformationSet() : BALL::ConformationSet
confusion_matrix_ : BALL::QSAR::ClassificationValidation
ConjugateGradientMinimizer() : BALL::ConjugateGradientMinimizer
connect() : BALL::Client
connect_to : BALL::FragmentDB::BuildBondsProcessor::Connection
connectChilds_() : BALL::VIEW::PTEDialog
CONNECTED : BALL::SmartsParser::SPAtom
connected_stream_ : BALL::TCPServer
ConnectedComponentsProcessor() : BALL::ConnectedComponentsProcessor
ConnectedToPredicate() : BALL::ConnectedToPredicate
connection_object_ : BALL::VIEW::Message
ConnectionList : BALL::SmilesParser , BALL::FragmentDB::BuildBondsProcessor
ConnectionObject() : BALL::VIEW::ConnectionObject
connectionRequested() : BALL::TCPServer
connections_ : BALL::FragmentDB::BuildBondsProcessor , BALL::SmilesParser
connectivity : BALL::GAFFTypeProcessor::TypeDefinition
CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
ConnectivityBase() : BALL::ConnectivityBase
CONNOLLY : BALL::GeometricFit
CONST : BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Option , BALL::SLICKScore::Default
const_argument_pointer : BALL::UnaryFunctor< ArgumentType, ResultType >
const_argument_reference : BALL::UnaryFunctor< ArgumentType, ResultType >
const_first_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
const_first_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
const_iterator : BALL::List< Value > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::PDBRecords , BALL::HashSet< Key > , BALL::TRegularData3D< ValueType > , BALL::ResidueRotamerSet
const_pointer : BALL::VIEW::CompositeManager , BALL::HashSet< Key >
const_reference : BALL::HashSet< Key > , BALL::TRegularData3D< ValueType > , BALL::PDBRecords , BALL::VIEW::CompositeManager , BALL::TRegularData2D< ValueType > , BALL::TRegularData1D< ValueType >
const_reverse_iterator : BALL::PDBRecords
const_second_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
const_second_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
CONSTANT : BALL::UhligCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Option
constant_ : BALL::NonpolarSolvation , BALL::MutableConstant< DataType >
constants_ : BALL::ParsedFunction< arg >
ConstBidirectionalFilterIterator() : BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional >
ConstBidirectionalIterator() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
ConstBoxIterator : BALL::HashGridBox3< Item > , BALL::HashGrid3< Item >
ConstContactFaceIterator : BALL::SolventExcludedSurface
ConstDataIterator : BALL::HashGridBox3< Item >
ConstEdgeIterator : BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::TriangulatedSurface , BALL::SolventExcludedSurface
ConstFaceIterator : BALL::GraphVertex< Vertex, Edge, Face >
ConstForwardFilterIterator() : BALL::ConstForwardFilterIterator< Predicate, IteratorForward >
ConstForwardIterator() : BALL::ConstForwardIterator< Container, DataType, Position, Traits >
ConstIterator : BALL::HashSet< Key > , BALL::PDBRecords , BALL::TRegularData1D< ValueType > , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::HashMap< Key, T > , BALL::List< Value > , BALL::TRegularData2D< ValueType > , BALL::StringHashMap< Value > , BALL::ExpressionParser::SyntaxTree , BALL::ConnectedToPredicate::CTPNode , BALL::AtomVector , BALL::PeakList< PT > , BALL::PyDatasetVector , BALL::NodeItem< Node, Edge > , BALL::ResidueRotamerSet , BALL::Gradient , BALL::ResourceEntry , BALL::ResourceFile , BALL::TRegularData3D< ValueType > , BALL::PyIndexList , BALL::PyCompositeList , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::PyColorRGBAVector , BALL::EdgeItem< Node, Edge >
ConstOrientationIterator : BALL::SASFace
ConstPointIterator : BALL::TriangulatedSurface
ConstRandomAccessFilterIterator() : BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess >
ConstRandomAccessIterator() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >
ConstReference : BALL::PDBRecords
ConstReverseIterator : BALL::Gradient , BALL::ConstReverseIterator< Container, DataType, Position, Traits > , BALL::PDBRecords , BALL::ConstReverseIterator< Container, DataType, Position, Traits >
construct() : BALL::Peptides::PeptideBuilder
constructExpressionTree_() : BALL::Expression
constructRingSystem_() : BALL::SDGenerator
ConstSingularEdgeIterator : BALL::SolventExcludedSurface
ConstSphericFaceIterator : BALL::SolventExcludedSurface
ConstToricFaceIterator : BALL::SolventExcludedSurface
ConstTriangleIterator : BALL::TriangulatedSurface
ConstVertexIterator : BALL::SolventExcludedSurface , BALL::GraphFace< Vertex, Edge, Face >
contact_faces_ : BALL::SolventExcludedSurface
ContactFaceIterator : BALL::SolventExcludedSurface
Container : BALL::ConstBidirectionalFilterIterator< Predicate, IteratorBidirectional > , BALL::ConstForwardFilterIterator< Predicate, IteratorForward > , BALL::ConstRandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::BaseFilterIterator< Predicate, IteratorBase > , BALL::RandomAccessFilterIterator< Predicate, IteratorRandomAccess > , BALL::ForwardFilterIterator< Predicate, IteratorForward > , BALL::BidirectionalFilterIterator< Predicate, IteratorBidirectional >
container_ : BALL::VIEW::DockWidget , BALL::Enumerator< Container, SiteIterator, Variant >
ContainerConstPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
ContainerPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
ContainerType : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
contains_selection_ : BALL::Composite
containsAtomChilds_() : BALL::MOL2File
containsSelection() : BALL::Composite
contentsDragEnterEvent() : BALL::VIEW::DragLogView , BALL::VIEW::PyWidget
contentsDragLeaveEvent() : BALL::VIEW::DragLogView
contentsDropEvent() : BALL::VIEW::PyWidget , BALL::VIEW::DragLogView
ContentType : BALL::JCAMPFile
contex_mutex_ : BALL::VIEW::GLRenderWindow
context_composite_ : BALL::VIEW::MolecularControl
context_item_ : BALL::VIEW::MolecularControl , BALL::VIEW::GenericControl
context_menu_ : BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl
context_menu_actions_ : BALL::VIEW::GeometricControl
context_plane_ : BALL::VIEW::GeometricControl
context_representation_ : BALL::VIEW::GeometricControl
contextMenuEvent() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget
continuation : BALL::PDB::RecordCAVEAT , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordHETSYN , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordTITLE , BALL::PDB::RecordREVDAT , BALL::PDB::RecordAUTHOR , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordHETNAM , BALL::PDB::RecordCOMPND
continuation_number : BALL::PDB::RecordFORMUL
CONTINUE : BALL::Processor
CONTINUED_LINE : BALL::KCFFile
ContourSurfaceDialog() : BALL::VIEW::ContourSurfaceDialog
control_ : BALL::VIEW::DatasetController
control_selection_ : BALL::VIEW::MainControl
CONTROL_WINDOW : BALL::VIEW::Scene
controller_ : BALL::VIEW::ContourSurfaceDialog , BALL::VIEW::GridVisualizationDialog
controllers_ : BALL::VIEW::DatasetControl
ControlSelectionMessage() : BALL::VIEW::ControlSelectionMessage
conventions_ : BALL::Peptides::NameConverter
conversion_table_ : BALL::Peptides::NameConverter
convertBrick_() : BALL::DSN6File
convertName() : BALL::Peptides::NameConverter
convertObject() : BALL::MoleculeObjectCreator , BALL::ObjectCreator
convertToGaussian() : BALL::Spectrum< DataT, PeakT, PositionT >
convertToLorentzian() : BALL::Spectrum< DataT, PeakT, PositionT >
convertToReal_() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
coordinate_transformation_records : BALL::PDB::BookKeeping
coordinateSystemEnabled() : BALL::VIEW::Stage
CoordinateType : BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TRegularData1D< ValueType >
COPPER : BALL::Element
copy() : BALL::VIEW::MolecularControl
COPY : BALL::VIEW::MolecularControl
copy() : BALL::File , BALL::ReducedSurface , BALL::TriangulatedSurface
copy_id_ : BALL::VIEW::MolecularControl
copy_list_ : BALL::VIEW::MolecularControl
copyData() : BALL::QSAR::Model
copyDescriptorIDs() : BALL::QSAR::Model
copyTo() : BALL::File
cor_threshold : BALL::QSAR::FeatureSelectionConfiguration
CORD_ : BALL::DCDFile
CORE : BALL::RingAnalyser
CORE_CHAIN : BALL::SDGenerator
corr_par_ : BALL::ShiftedLVMMMinimizer
correct() : BALL::RSComputer
correct_CA_shifts_ : BALL::HaighMallionShiftProcessor
correctASUPositions_() : BALL::CrystalGenerator
correctEdges() : BALL::ReducedSurface
CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::Option , BALL::ShiftedLVMMMinimizer::Default
CorrectionParameter : BALL::ShiftedLVMMMinimizer
correctProbePosition() : BALL::RSComputer
CosineTorsion() : BALL::CosineTorsion
COSY_CH : BALL::ShiftModel2D
COSY_HH : BALL::ShiftModel2D
COULOMB : BALL::FDPB::Boundary
coulombIntegralApproximation_() : BALL::GeneralizedBornModel
count() : BALL::Composite
COUNT__ITEMS : BALL::VIEW::MolecularControl
count_items_action_ : BALL::VIEW::MolecularControl
countAtomContainers() : BALL::Residue , BALL::AtomContainer , BALL::Nucleotide
countAtoms() : BALL::System , BALL::AtomContainer
countBondOrders() : BALL::AddHydrogenProcessor
countBonds() : BALL::Atom , BALL::AtomContainer
countChains() : BALL::Protein , BALL::System
countChildren() : BALL::ResourceEntry
countComponents() : BALL::ForceField
countDescendants() : BALL::Composite , BALL::ResourceEntry
countDescendants_() : BALL::Composite
countDirectories() : BALL::Directory
countEdges() : BALL::SmartsParser::SPNode
countFields() : BALL::String
countFieldsQuoted() : BALL::String
countFiles() : BALL::Directory
countFragments() : BALL::System
countFragments_() : BALL::StructureMapper
countHits_() : BALL::FragmentDB::NormalizeNamesProcessor
CountingMode : BALL::FragmentDB::NormalizeNamesProcessor
countInstances_() : BALL::Embeddable
countInterBonds() : BALL::AtomContainer
countIntraBonds() : BALL::AtomContainer
countItems() : BALL::Directory , BALL::VIEW::MolecularControl
countMolecules() : BALL::System
countNamedProperties() : BALL::PropertyManager
countNonEmptyBoxes() : BALL::HashGrid3< Item >
countNucleicAcids() : BALL::System
countNucleotides() : BALL::System , BALL::NucleicAcid
countPDBAtoms() : BALL::Chain , BALL::Protein , BALL::SecondaryStructure , BALL::Residue
countPiElectrons_() : BALL::AromaticityProcessor
countProperties() : BALL::PropertyManager , BALL::SmartsParser::SPAtom
countProteins() : BALL::System
countRealValences() : BALL::SmartsParser::SPAtom , BALL::SmilesParser::SPAtom
countRecord() : BALL::PDBFile
countRecordFields() : BALL::PDBFile
countRecords() : BALL::PDBFile
countResidues() : BALL::System , BALL::Chain , BALL::SecondaryStructure , BALL::Protein
counts_format_ : BALL::MOLFile
countSecondaryStructures() : BALL::Protein , BALL::System , BALL::Chain
countSubexpressions() : BALL::RegularExpression
countValue() : BALL::BitVector
countVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
covalent_radius_ : BALL::Element
Cp_ref : BALL::CharmmEEF1::Values
Cp_ref_ : BALL::CharmmEEF1
cpu_speed_ : BALL::Timer
Cr : BALL::Element
crd : BALL::MMFF94AtomType
create() : BALL::String , BALL::Directory , BALL::Factory< T > , BALL::QSAR::ModelFactory< T > , BALL::QSAR::RegistryEntry
create6Ring_() : BALL::VIEW::AddCartoonModel
create_button_ : BALL::VIEW::DisplayProperties
create_coordinate_system_ : BALL::VIEW::Scene
CREATE_DISTANCE_GRID : BALL::VIEW::MolecularTaskMessage
create_distance_grid_id2_ : BALL::VIEW::MolecularStructure
create_distance_grid_id_ : BALL::VIEW::MolecularStructure
CREATE_INTERACTION_FILE : BALL::CHPI::Default , BALL::CHPI::Option
CREATE_INTERACTIONS_FILE : BALL::Lipophilic::Default , BALL::Lipophilic::Option , BALL::BuriedPolar::Default , BALL::BuriedPolar::Option
create_methods_ : BALL::PersistenceManager , BALL::Expression
CREATE_REPRESENTATION : BALL::VIEW::MolecularControl
create_representations_for_new_molecules_ : BALL::VIEW::DisplayProperties
createAtom() : BALL::SmartsParser , BALL::SmilesParser
createAtomGrid() : BALL::VIEW::ColorProcessor
createBiCubicSpline() : BALL::CubicSpline2D
createBond() : BALL::Atom , BALL::SmilesParser , BALL::Bond , BALL::Atom
createBond_() : BALL::VIEW::EditableScene
createBonds() : BALL::SmilesParser
createBoxes_() : BALL::VIEW::GLRenderer
createColorProcessor() : BALL::VIEW::ColoringSettingsDialog
createCombination() : BALL::Enumerator< Container, SiteIterator, Variant >
createConcaveEdge() : BALL::SESComputer
createContourLine() : BALL::TContourLine< T >
createConvexEdge() : BALL::SESComputer
createCoordinateSystem() : BALL::VIEW::Scene
createCoordinateSystem_() : BALL::VIEW::Scene
createCoordinateSystemAtOrigin() : BALL::VIEW::Scene
createDisk() : BALL::TriangulatedSurface
createDotBox_() : BALL::VIEW::GLRenderer
createDottedSphere_() : BALL::VIEW::GLRenderer
createDoubleRing_() : BALL::VIEW::AddCartoonModel
createEdge() : BALL::SolventAccessibleSurface
createEditor() : BALL::VIEW::ComboBoxDelegate
createEntries() : BALL::VIEW::AssignBondOrderResultsDialog
createEvaluationMethod() : BALL::VIEW::DockingController
createFace() : BALL::SolventAccessibleSurface
createFieldLine_() : BALL::VIEW::FieldLineCreator
createFinalString() : BALL::UCK
createFPSInfo_() : BALL::VIEW::Scene
createFreeEdge() : BALL::RSComputer
createFreeToricFace() : BALL::SESComputer
createGeometricObjects() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddSurfaceModel , BALL::VIEW::ModelProcessor , BALL::VIEW::LabelModel
createGridFromCameraDistance() : BALL::VIEW::MolecularStructure
createGridFromDistance() : BALL::VIEW::MolecularStructure
createHashGrid() : BALL::SASTriangulator
createHelix_() : BALL::VIEW::AddCartoonModel
createHistogramGrid() : BALL::VIEW::RegularData3DController
createHotkey() : BALL::VIEW::Hotkey
createKernel1 : BALL::QSAR::RegistryEntry , BALL::QSAR::ModelFactory< T >
createKernel2() : BALL::QSAR::ModelFactory< T > , BALL::QSAR::RegistryEntry
createLineBox_() : BALL::VIEW::GLRenderer
createLines() : BALL::VIEW::FieldLineCreator
createMap() : BALL::VIEW::ColorMap
createMapJet() : BALL::VIEW::ColorMap
createMapping() : BALL::NMRStarFile::BALLToBMRBMapper
createMenuEntries() : BALL::VIEW::RaytraceableGridController , BALL::VIEW::RegularData3DController , BALL::VIEW::TrajectoryController , BALL::VIEW::DockResultController , BALL::VIEW::DatasetController , BALL::VIEW::VectorGridController
createMenuHelpEntry_() : BALL::VIEW::PyWidget
CreateMethod : BALL::PersistenceManager , BALL::ShiftModel
CreateMethodMap : BALL::ShiftModel
createModel_() : BALL::VIEW::AddCartoonModel , BALL::VIEW::AddBackboneModel
createModelProcessor() : BALL::VIEW::ModelSettingsDialog
createModule_() : BALL::ShiftModel
createMolecule_() : BALL::VIEW::EditableScene
createMultipleLabels_() : BALL::VIEW::LabelDialog
createNewClippingPlane() : BALL::VIEW::GeometricControl
createNewMolecule() : BALL::VIEW::EditableScene
createNewNode_() : BALL::ConnectedToPredicate
createNewTriangles() : BALL::SASTriangulator
createNonBondedList_() : BALL::VanDerWaals
createObject() : BALL::PersistenceManager
createOneLabel_() : BALL::VIEW::LabelDialog
createParameters() : BALL::QSAR::LibsvmModel
createPeak_() : BALL::ShiftModel2D
createPlanes() : BALL::SASTriangulator
createPlot() : BALL::VIEW::RegularData1DWidget , BALL::VIEW::RegularData2DWidget
createPoints() : BALL::SASTriangulator
createProblem() : BALL::QSAR::LibsvmModel
createRaytraceableGrid() : BALL::VIEW::RegularData3DController
createRepresentation() : BALL::VIEW::DisplayProperties , BALL::VIEW::MolecularControl , BALL::VIEW::RepresentationManager , BALL::VIEW::DisplayProperties
createRepresentation_() : BALL::VIEW::MolecularControl
CreateRepresentationMessage() : BALL::VIEW::CreateRepresentationMessage
createRepresentationMode() : BALL::VIEW::DisplayProperties
createResidue_() : BALL::Peptides::PeptideBuilder
createRibbon_() : BALL::VIEW::AddBackboneModel
createScript_() : BALL::VIEW::PyWidget
createSimpleNucleicAcid_() : BALL::VIEW::AddCartoonModel
createSingularVertex() : BALL::SESComputer
createSolidBox_() : BALL::VIEW::GLRenderer
CreateSpectrumProcessor() : BALL::CreateSpectrumProcessor
createSphere() : BALL::VIEW::RegularData3DController
createSpheres_() : BALL::VIEW::GLRenderer
createSphericFace() : BALL::SESComputer
createSpline() : BALL::CubicSpline1D
createStrand_() : BALL::VIEW::AddCartoonModel
createTemporaryFilename() : BALL::File
createTexture() : BALL::VIEW::GLRenderWindow
createTextureFromGrid() : BALL::VIEW::GLRenderer
createToricFace() : BALL::SESComputer
createTriangleAndEdges() : BALL::SESTriangulator
createTrivialMapping() : BALL::NMRStarFile::BALLToBMRBMapper
createTube() : BALL::TriangulatedSurface
createTube_() : BALL::VIEW::AddBackboneModel
createTubeHelix_() : BALL::VIEW::AddCartoonModel
createTubes_() : BALL::VIEW::GLRenderer
createVectorGrid() : BALL::VIEW::RegularData3DController
createVertex() : BALL::SESComputer , BALL::SolventAccessibleSurface
createVoid() : BALL::Factory< T >
createWatsonCrickModel_() : BALL::VIEW::AddCartoonModel
creating_representations_ : BALL::VIEW::GeometricControl
CreationMethod : BALL::Expression
crossValidation() : BALL::QSAR::RegressionValidation , BALL::QSAR::ClassificationValidation , BALL::QSAR::Validation
crystal_dimension_ : BALL::DSN6File
CrystalGenerator() : BALL::CrystalGenerator
CrystalInfo() : BALL::CrystalInfo
Cs : BALL::Element
csv_compound_labels : BALL::QSAR::InputConfiguration
csv_desc_labels : BALL::QSAR::InputConfiguration
csv_file : BALL::QSAR::InputConfiguration
csv_no_response : BALL::QSAR::InputConfiguration
csv_separator : BALL::QSAR::InputConfiguration
CTPNode() : BALL::ConnectedToPredicate::CTPNode
Cu : BALL::Element
Cube() : BALL::TContourSurface< T >::Cube
CubicFunction() : BALL::CubicFunction< Function, DataType >
CubicSpline1D() : BALL::CubicSpline1D
CubicSpline2D() : BALL::CubicSpline2D
CUDAError() : BALL::Exception::CUDAError
CUPRUM : BALL::Element
cur_box_ : BALL::HashGridBox3< Item >::BoxIteratorTraits
CURIUM : BALL::Element
curr_double : BALL::Kekuliser::AtomInfo
curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
current_aps_type : BALL::GAFFCESParser::State
current_aromatic_system_ : BALL::Kekuliser
current_atom : BALL::GAMESSLogFile , BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
current_atom_ : BALL::VIEW::EditableScene
current_block_ : BALL::GAMESSDatFile
current_bond_ : BALL::VIEW::EditableScene
current_chain : BALL::PDB::AdditionalAtomInfo
current_chain_ : BALL::PDBFile
current_coefficient_line : BALL::GAMESSLogFile
current_const_atom_ : BALL::PDBFile
current_const_chain_ : BALL::PDBFile
current_const_protein_ : BALL::PDBFile
current_const_residue_ : BALL::PDBFile
current_datablock_ : BALL::CIFFile
CURRENT_DIRECTORY : BALL::FileSystem
current_energy_ : BALL::EnergyMinimizer
current_grad_ : BALL::EnergyMinimizer
current_image_ : BALL::VIEW::GLOffscreenTarget
current_indent_ : BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
current_item_ : BALL::CIFFile
current_light_ : BALL::VIEW::LightSettings
current_line_ : BALL::VIEW::PyWidget
current_mode_ : BALL::VIEW::Scene
current_model_ : BALL::PDBFile
current_molecule_ : BALL::GAFFTypeProcessor
current_parser : BALL::GAMESSLogFile::State , BALL::ExpressionParser::State , BALL::CIFFile::State , BALL::GAMESSDatFile::State , BALL::GAFFCESParser::State , BALL::SmartsParser::State , BALL::SmilesParser::State
current_parser_ : BALL::ExpressionParser , BALL::SmartsParser , BALL::SmilesParser
current_PDB_atom_ : BALL::PDBFile
current_penalty_ : BALL::Kekuliser
current_position_ : BALL::TContourSurface< T >::Cube
current_predicate : BALL::GAFFCESParser
current_protein_ : BALL::PDBFile
current_record_ : BALL::PDBFile
current_record_type_ : BALL::PDBFile
current_reply_ : BALL::VIEW::DownloadPDBFile , BALL::VIEW::DownloadElectronDensity
current_representation_ : BALL::VIEW::MaterialSettings
current_request_id_ : BALL::VIEW::PubChemDialog
current_residue : BALL::PDB::AdditionalAtomInfo
current_residue_ : BALL::PDBFile
current_root_predicate : BALL::GAFFCESParser
current_round_ : BALL::GeometricFit
current_saveframe_ : BALL::CIFFile
current_script_ : BALL::VIEW::PyWidget
current_secs_ : BALL::Timer
current_set : BALL::GAMESSLogFile
current_snapshot_ : BALL::DCDFile , BALL::SnapShotManager
current_step_ : BALL::VIEW::DemoTutorialDialog
current_system_time_ : BALL::Timer
current_temperature_ : BALL::MolecularDynamics
current_threshold_ : BALL::VIEW::RaytraceableContourSurfaceDialog
CURRENT_TIME : BALL::MolecularDynamics::Option , BALL::MolecularDynamics::Default
current_time_ : BALL::MolecularDynamics
current_usecs_ : BALL::Timer
current_user_time_ : BALL::Timer
currentEntry() : BALL::VIEW::Preferences
currentPage() : BALL::VIEW::Preferences
currentStackPage() : BALL::VIEW::PreferencesEntry
curvature_ : BALL::CubicSpline1D
custom_color_ : BALL::VIEW::LabelDialog , BALL::VIEW::DisplayProperties
custom_model_information_ : BALL::VIEW::Representation
CustomColorProcessor() : BALL::VIEW::CustomColorProcessor
customColorTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
customEvent() : BALL::VIEW::Scene
CUT : BALL::VIEW::MolecularControl
cut() : BALL::VIEW::MolecularControl , BALL::TriangulatedSurface
cut_hash_map_ : BALL::TContourSurface< T >
cut_id_ : BALL::VIEW::MolecularControl
cut_off2_ : BALL::HaighMallionShiftProcessor , BALL::EFShiftProcessor
cut_off_ : BALL::AmberNonBonded , BALL::MMFF94NonBonded , BALL::CharmmNonBonded
cut_off_electrostatic_ : BALL::AmberNonBonded , BALL::CharmmNonBonded
cut_off_solvation_ : BALL::CharmmNonBonded
cut_off_vdw_ : BALL::AmberNonBonded , BALL::VanDerWaals , BALL::CharmmNonBonded
cut_on_electrostatic_ : BALL::AmberNonBonded , BALL::CharmmNonBonded
cut_on_solvation_ : BALL::CharmmNonBonded
cut_on_vdw_ : BALL::CharmmNonBonded , BALL::AmberNonBonded , BALL::VanDerWaals
cutlo_ : BALL::EnergyMinimizer
CW_AL : BALL::SmartsParser
CW_AL_OR_UNSPECIFIED : BALL::SmartsParser
CW_DEFAULT : BALL::SmartsParser
CW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
CW_OH : BALL::SmartsParser
CW_OH_OR_UNSPECIFIED : BALL::SmartsParser
CW_SP : BALL::SmartsParser
CW_SP_OR_UNSPECIFIED : BALL::SmartsParser
CW_TB : BALL::SmartsParser
CW_TB_OR_UNSPECIFIED : BALL::SmartsParser
CW_TH : BALL::SmartsParser
CW_TH_OR_UNSPECIFIED : BALL::SmartsParser
CX_DISTANCE_UPPER : BALL::CHPI::Default , BALL::CHPI::Option
CX_distance_upper_ : BALL::CHPI
cycleDFS_() : BALL::RotationalEntropyLoss
cys_pressed() : BALL::VIEW::PeptideDialog
CYTOSINE : BALL::DNAMutator