- P :
BALL::Rotamer
- p :
BALL::TCircle3< T > ,
BALL::TPlane3< T > ,
BALL::TSphere3< T > ,
BALL::TLine3< T > ,
BALL::TriangulatedSphere::Face
- p_ :
BALL::QSAR::LibsvmModel
- P_ :
BALL::RingPerceptionProcessor
- p_i_ :
BALL::ConjugateGradientMinimizer
- p_t_ :
BALL::ConjugateGradientMinimizer
- pair_charges_ :
BALL::GeneralizedBornModel
- pair_distances_ :
BALL::GeneralizedBornModel
- pair_items :
BALL::CIFFile::SaveFrame
- pair_list_ :
BALL::GeneralizedBornModel
- par1 :
BALL::QSAR::Kernel
- par2 :
BALL::QSAR::Kernel
- param :
BALL::QSAR::LibsvmModel::svm_model
- parameterDefaults :
BALL::QSAR::RegistryEntry
- parameterNames :
BALL::QSAR::RegistryEntry
- parameters_ :
BALL::ShiftModel2D ,
BALL::ShiftModule ,
BALL::QSAR::LibsvmModel ,
BALL::ClaverieParameter ,
BALL::ForceField ,
BALL::MMFF94OutOfPlaneBend ,
BALL::MMFF94StretchParameters ,
BALL::MMFF94BendParameters ,
BALL::MMFF94StretchBendParameters ,
BALL::MMFF94TorsionParameters ,
BALL::MMFF94PlaneParameters ,
BALL::MMFF94VDWParameters ,
BALL::MMFF94ESParameters ,
BALL::MMFF94Torsion ,
BALL::ShiftModel ,
BALL::ShiftModel1D
- parameters_by_row_ :
BALL::MMFF94StretchBendParameters
- parameters_initialized_ :
BALL::AmberFF ,
BALL::CharmmFF ,
BALL::MMFF94
- parent :
BALL::HashGridBox3< Item > ,
BALL::GAFFCESParser::CESPredicate ,
BALL::AssignBondOrderProcessor::Solution_
- parent_ :
BALL::Composite ,
BALL::NMRStarFile::NMRAtomDataSet ,
BALL::ResourceEntry ,
BALL::ConnectedToPredicate::CTPNode ,
BALL::VIEW::AtomOverview ,
BALL::VIEW::BondProperties ,
BALL::VIEW::ConnectionObject
- PARENT_DIRECTORY :
BALL::FileSystem
- parent_widget_ :
BALL::VIEW::ServerWidget::BALLViewServer
- parents_ :
BALL::RingPerceptionProcessor
- parity :
BALL::MOLFile::AtomStruct
- pars_ :
BALL::Bruker1DFile
- PARSE_INI_FILE :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- PARSE_PARTIAL_CHARGES :
BALL::PDBFile::Option ,
BALL::PDBFile::Default
- parse_partial_charges_ :
BALL::PDBFile
- parser_ :
BALL::GAFFCESParser::CESPredicate
- parsf1_ :
BALL::Bruker2DFile
- parsf2_ :
BALL::Bruker2DFile
- partial_charge :
BALL::PDB::RecordATOM
- partner_atom :
BALL::PDB::RecordSLTBRG
- partner_id :
BALL::Kekuliser::AtomInfo
- partner_residue :
BALL::PDB::RecordSSBOND
- partner_type_to_htype_ :
BALL::MMFF94AtomTyper
- past_the_end_ :
BALL::Enumerator< Container, SiteIterator, Variant
>::IteratorTraits_
- paste_id_ :
BALL::VIEW::MolecularControl
- path_ :
BALL::Path ,
BALL::SimpleDownloaderHelper::DLThread
- path_array_ :
BALL::Path
- path_array_valid_ :
BALL::Path
- PATH_SEPARATOR :
BALL::FileSystem
- pattern_ :
BALL::RegularExpression
- pause_ :
BALL::DockingAlgorithm
- pbcis_ :
BALL::MMFF94ESParameters
- pbuf_ :
BALL::LogStreamBuf
- pcm_ :
BALL::NonpolarSolvation
- pcount :
BALL::TriangulatedSphere::Face
- PDB_atom_map_ :
BALL::PDBFile
- pdb_id :
BALL::PDB::AdditionalAtomInfo
- peak_list_ :
BALL::Experiment< PeakListType >
- peak_set_ :
BALL::GeometricFit
- peaklist_ :
BALL::CreateSpectrumProcessor
- peaks_ :
BALL::ShiftModel1D ,
BALL::ShiftModel2D
- peeling_order_ :
BALL::RingAnalyser
- penalties_ :
BALL::AssignBondOrderProcessor
- PENALTY_MOBILE :
BALL::GeometricFit::Option ,
BALL::GeometricFit::Default
- PENALTY_STATIC :
BALL::GeometricFit::Option ,
BALL::GeometricFit::Default
- period_ : BALL::Element
- periodic_boundary :
BALL::ForceField
- PERIODIC_BOX_ADD_SOLVENT :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_DISTANCE :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_ENABLED :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_LOWER :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_SOLVENT_FILE :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_BOX_UPPER :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- PERIODIC_WATER_FILE :
BALL::PeriodicBoundary::Option ,
BALL::PeriodicBoundary::Default
- pH :
BALL::SampleCondition ,
BALL::NMRStarFile::SampleCondition
- phase :
BALL::AmberTorsion::SingleAmberTorsion ,
BALL::CharmmTorsion::SingleCharmmTorsion ,
BALL::CosineTorsion::SingleValues ,
BALL::QuadraticImproperTorsion::Values
- phi_ :
BALL::GeometricFit::RotationAngles_ ,
BALL::Peptides::AminoAcidDescriptor ,
BALL::ResidueRotamerSet
- phi_grid :
BALL::FDPB
- PHI_MAX :
BALL::GeometricFit::Option ,
BALL::GeometricFit::Default
- PHI_MIN :
BALL::GeometricFit::Option ,
BALL::GeometricFit::Default
- phis_ :
BALL::MMFF94ESParameters
- PI :
BALL::Constant
- pick_select_ :
BALL::VIEW::Scene
- picking_action_ :
BALL::VIEW::Scene
- picking_mode_ :
BALL::VIEW::GLRenderer
- pilp :
BALL::MMFF94AtomType
- pitch :
BALL::VIEW::FrameBufferFormat
- pixel_buffer_ :
BALL::VIEW::GLOffscreenTarget
- pixelFormat :
BALL::VIEW::FrameBufferFormat
- pixmap_ :
BALL::VIEW::CanvasWidget::PixmapItem
- planBackward_ :
BALL::TFFT1D< ComplexTraits > ,
BALL::TFFT2D< ComplexTraits > ,
BALL::TFFT3D< ComplexTraits >
- planCalculated_ :
BALL::TFFT1D< ComplexTraits > ,
BALL::TFFT2D< ComplexTraits > ,
BALL::TFFT3D< ComplexTraits >
- PLANCK :
BALL::Constant
- plane_ :
BALL::VIEW::SetClippingPlane
- plane_to_item_ :
BALL::VIEW::GeometricControl
- planForward_ :
BALL::TFFT1D< ComplexTraits > ,
BALL::TFFT2D< ComplexTraits > ,
BALL::TFFT3D< ComplexTraits >
- plus_ :
BALL::DSN6File
- pm_ :
BALL::Client ,
BALL::ObjectCreator
- point :
BALL::RSComputer::ProbePosition ,
BALL::SESSingularityCleaner::ProbeIntersection
- point_ :
BALL::TBox3< T > ,
BALL::SASVertex ,
BALL::SESVertex ,
BALL::TrianglePoint ,
BALL::SESTriangulator ,
BALL::VIEW::ClippingPlane ,
BALL::VIEW::GridVisualisation
- point_ptr_ :
BALL::VIEW::Sphere
- pointer_list_ :
BALL::PersistenceManager
- pointer_map_ :
BALL::PersistenceManager
- points :
BALL::VIEW::GridVisualisation
- points_ :
BALL::TriangulatedSurface
- POLAR :
BALL::SLICKEnergy::Option ,
BALL::SLICKEnergy::Default ,
BALL::SLICKScore::Option ,
BALL::SLICKScore::Default
- POLAR_AVG :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- POLAR_CHARGE_RULES :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- polar_color_ :
BALL::VIEW::ResidueTypeColorProcessor
- POLAR_FOCUS_GRID_AROUND_LIGAND :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- POLAR_GB :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- POLAR_METHOD :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- POLAR_OVERWRITE_CHARGES :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- POLAR_OVERWRITE_RADII :
BALL::PolarSolvation::Default ,
BALL::PolarSolvation::Option
- POLAR_RADIUS_RULES :
BALL::PolarSolvation::Option ,
BALL::PolarSolvation::Default
- polymer_class :
BALL::NMRStarFile::MonomericPolymer
- pool_ :
BALL::SmartsMatcher
- port_ :
BALL::VIEW::ServerWidget::BALLViewServer ,
BALL::Client ,
BALL::TCPServer ,
BALL::VIEW::ServerPreferences ,
BALL::VIEW::ServerWidget
- pos_ :
BALL::SmartsMatcher::RecStruct_
- pos_C :
BALL::HBondProcessor::ResidueData
- pos_H :
BALL::HBondProcessor::ResidueData
- pos_N :
BALL::HBondProcessor::ResidueData
- pos_O :
BALL::HBondProcessor::ResidueData
- posbridges_ :
BALL::SecondaryStructureProcessor
- position :
BALL::MOL2File::AtomStruct ,
BALL::MOLFile::AtomStruct ,
BALL::BindingPocketProcessor::Sphere_
- position_ :
BALL::Peak< PositionType > ,
BALL::ElementColumnIteratorTraits< valuetype, mtraits
> ,
BALL::Enumerator< Container, SiteIterator, Variant
>::IteratorTraits_ ,
BALL::HashGrid3< Item >::BoxIteratorTraits ,
BALL::Composite::CompositeIteratorTraits ,
BALL::Enumerator< Container, SiteIterator, Variant
> ,
BALL::HashGridBox3< Item >::BoxIteratorTraits ,
BALL::HashGridBox3< Item >::DataIteratorTraits ,
BALL::HashSet< Key >::IteratorTraits ,
BALL::INIFile::IteratorTraits_ ,
BALL::ResourceEntry::IteratorTraits_ ,
BALL::Atom::BondIteratorTraits ,
BALL::Atom ,
BALL::ColumnIteratorTraits< valuetype, mtraits > ,
BALL::DiagonalIteratorTraits< valuetype, mtraits >
,
BALL::ElementRowIteratorTraits< valuetype, mtraits
> ,
BALL::RowIteratorTraits< valuetype, mtraits > ,
BALL::VectorIteratorTraits< valuetype > ,
BALL::VIEW::LightSource
- position_data_size :
BALL::TRRFile::TRRHeader
- POSITION_VALUE_NA :
BALL::NMRStarFile
- possible_buried_polar_interactions_ :
BALL::BuriedPolar
- possible_hydrogen_bonds_ :
BALL::HydrogenBond
- possible_interactions_ :
BALL::AromaticRingStacking ,
BALL::CHPI
- possible_lipophilic_interactions_ :
BALL::Lipophilic
- possible_metal_interactions_ :
BALL::ChemScoreMetal
- potential_energy_ :
BALL::SnapShot
- potential_grid_ :
BALL::VIEW::FieldLineCreator
- pov_nr_ :
BALL::VIEW::Scene
- pre_translation_a_ :
BALL::GeometricFit
- pre_translation_b_ :
BALL::GeometricFit
- precision_ :
BALL::TRRFile
- predicate :
BALL::ExpressionParser::SyntaxTree
- predicate_ :
BALL::ExpressionTree ,
BALL::CompositeIteratorTraits ,
BALL::BaseFilterIterator< Predicate, IteratorBase
>
- PREDICTION_METHOD :
BALL::HBondProcessor::Option ,
BALL::HBondProcessor::Default
- predQualFetcher_ :
BALL::QSAR::RegressionValidation
- preferences_ :
BALL::VIEW::PyWidget ,
BALL::VIEW::DisplayProperties
- preferences_action_ :
BALL::VIEW::MainControl
- preferences_dialog_ :
BALL::VIEW::MainControl
- preferences_file_ :
BALL::VIEW::MainControl
- prefix :
BALL::LogStreamBuf::StreamStruct
- prefix_ :
BALL::VIEW::DownloadPDBFile ,
BALL::VIEW::DemoTutorialDialog ,
BALL::RuleEvaluator
- pres_size :
BALL::TRRFile::TRRHeader
- pressure :
BALL::SampleCondition ,
BALL::NMRStarFile::SampleCondition
- PRESSURE :
BALL::PierottiCavFreeEnergyProcessor::Default ,
BALL::ReissCavFreeEnergyProcessor::Option ,
BALL::ReissCavFreeEnergyProcessor::Default ,
BALL::PierottiCavFreeEnergyProcessor::Option
- prev_shift_val_ :
BALL::ShiftedLVMMMinimizer
- preview_ :
BALL::VIEW::Scene
- previous_ :
BALL::Composite
- primitive_manager_ :
BALL::VIEW::MainControl
- print_expected :
BALL::QSAR::PredictionConfiguration
- PRINT_TIMING :
BALL::FDPB::Default ,
BALL::FDPB::Option
- probA :
BALL::QSAR::LibsvmModel::svm_model
- probabilities_ :
BALL::QSAR::NBModel
- probB :
BALL::QSAR::LibsvmModel::svm_model
- probe_intersections_ :
BALL::SESSingularityCleaner
- PROBE_LAYER_RADIUS :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- probe_positions_ :
BALL::RSComputer
- PROBE_RADIUS :
BALL::NonpolarSolvation::Option ,
BALL::NonpolarSolvation::Default ,
BALL::PierottiCavFreeEnergyProcessor::Option ,
BALL::ReissCavFreeEnergyProcessor::Option ,
BALL::UhligCavFreeEnergyProcessor::Option ,
BALL::NumericalSAS::Option ,
BALL::UhligCavFreeEnergyProcessor::Default ,
BALL::NumericalSAS::Default ,
BALL::ReissCavFreeEnergyProcessor::Default ,
BALL::FDPB::Default ,
BALL::PCMCavFreeEnergyProcessor::Default ,
BALL::FDPB::Option ,
BALL::PierottiCavFreeEnergyProcessor::Default ,
BALL::PCMCavFreeEnergyProcessor::Option
- probe_radius_ :
BALL::ReducedSurface ,
BALL::SurfaceProcessor ,
BALL::VIEW::AddSurfaceModel ,
BALL::NonpolarSolvation
- PROBE_SPHERE_RADIUS :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- PROBE_SPHERE_RADIUS_HYDROGEN_FREE :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- probe_weight :
BALL::BindingPocketProcessor::Sphere_
- processing_message_queue_ :
BALL::VIEW::ConnectionObject
- processor_ :
BALL::NonpolarSolvation ,
BALL::VIEW::AtomOverview
- prod_ :
BALL::DSN6File
- progress_ :
BALL::VIEW::PubChemDialog
- progress_bar_ :
BALL::VIEW::DownloadElectronDensity ,
BALL::VIEW::DownloadPDBFile
- progress_dialog_ :
BALL::VIEW::DockingController
- project_ :
BALL::VIEW::HelpViewer ,
BALL::VIEW::ShowHelpMessage
- project_target_to_ring_plane_ :
BALL::HaighMallionShiftProcessor
- projection_mode_ :
BALL::VIEW::Camera
- prop_ :
BALL::DNAMutator
- properties_ :
BALL::Composite ,
BALL::SmartsParser::SPAtom
- properties_real_ :
BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- properties_string_ :
BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
- PROPERTY__ANISOTROPY_SHIFT :
BALL::AnisotropyShiftProcessor
- PROPERTY__EF_SHIFT :
BALL::EFShiftProcessor
- PROPERTY__EHS_SHIFT :
BALL::EmpiricalHSShiftProcessor
- PROPERTY__EXPERIMENTAL__SHIFT :
BALL::ShiftModule
- PROPERTY__HBOND_SHIFT :
BALL::HBondShiftProcessor
- PROPERTY__RANDOM_COIL_SHIFT :
BALL::RandomCoilShiftProcessor
- PROPERTY__RING_CURRENT_SHIFT :
BALL::HaighMallionShiftProcessor ,
BALL::JohnsonBoveyShiftProcessor
- PROPERTY__SHIFT :
BALL::ShiftModule
- property_files_ :
BALL::EmpiricalHSShiftProcessor
- property_pairs_ :
BALL::EmpiricalHSShiftProcessor
- protein_ :
BALL::VIEW::PeptideDialog
- protein_clash_rad_ :
BALL::BindingPocketProcessor
- protein_grid_ :
BALL::BindingPocketProcessor
- proteinname_ :
BALL::Peptides::PeptideBuilder
- proton_list_ :
BALL::JohnsonBoveyShiftProcessor ,
BALL::AnisotropyShiftProcessor
- PROTON_MASS :
BALL::Constant
- proxy_model_ :
BALL::VIEW::ShortcutTableView
- PSEUDO_ATOMS_INIFile :
BALL::Peptides::NameConverter::Default ,
BALL::Peptides::NameConverter::Option
- pseudo_conventions_ :
BALL::Peptides::NameConverter
- pseudo_conversion_table_ :
BALL::Peptides::NameConverter
- psi_ :
BALL::ResidueRotamerSet ,
BALL::Peptides::AminoAcidDescriptor ,
BALL::GeometricFit::RotationAngles_
- PSI_MAX :
BALL::GeometricFit::Option ,
BALL::GeometricFit::Default
- PSI_MIN :
BALL::GeometricFit::Default ,
BALL::GeometricFit::Option
- pte_ :
BALL::VIEW::EditFunctions
- ptr_ :
BALL::TContourSurface< T >::Cube
- pw_ :
BALL::VIEW::PyWidget::MyLineEdit ,
BALL::VIEW::PyWidget::MyTextEdit
- PW_GAUSSIAN_WIDTH :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- pw_grid_ :
BALL::BindingPocketProcessor
- PW_MAX_DISTANCE :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- PW_SQUARE_WELL :
BALL::BindingPocketProcessor::Option ,
BALL::BindingPocketProcessor::Default
- python_format :
BALL::VIEW::PythonHighlighter
- python_keywords :
BALL::VIEW::PythonHighlighter
- python_line_ :
BALL::VIEW::TestFramework
- python_patterns :
BALL::VIEW::PythonHighlighter
- python_settings_ :
BALL::VIEW::PyWidget
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