Here is a list of all variables with links to the classes they belong to:
- f -
- F : ImmoniumIonsInPeptide
- f : Base64::Reinterpreter32_, Base64::Reinterpreter64_
- f_ : FASTAContainer< TFI_File >
- f_options_ : FileHandler
- factor_ : SpectrumCheapDPCorr
- factors : MzTabMStudyVariableMetaData
- faims_merge_features_ : Biosaur2Algorithm
- fall : TIC::Result
- false_discovery_rate : MzTabMetaData
- far_ : Plot3DOpenGLCanvas
- fatal_streams_ : LogConfigHandler
- fdr_threshold : IdentificationSummary::UniqueID
- feasible_adducts : MS2AdductsOfSinglePrecursorAdduct
- feat_finder_ : FeatureFinderAlgorithmMetaboIdent, FeatureFinderIdentificationAlgorithm
- feat_processing_keys_ : OMSFileStore
- feat_score_ : FeatureHypothesis
- feature : AbsoluteQuantitationStandards::featureConcentration, QTCluster::Element, QTCluster::Neighbor
- feature0_charge_ : ChargePair
- feature0_index_ : ChargePair
- feature1_charge_ : ChargePair
- feature1_index_ : ChargePair
- feature_ : FeatureEditDialog, FeatureOpenMS, GridFeature
- feature_compare_ : FeatureFinderAlgorithmMetaboIdent, FeatureFinderIdentificationAlgorithm
- feature_count : FeatureSummary::Result
- feature_distance_ : FeatureGroupingAlgorithmKD, QTClusterFinder
- feature_filter_ : FeatureFinderAlgorithmMetaboIdent
- feature_filter_peptides_ : FeatureFinderIdentificationAlgorithm
- feature_filter_quality_ : FeatureFinderIdentificationAlgorithm
- feature_index_ : GridFeature
- feature_map_ : FeatureFinderMultiplexAlgorithm, MRMFeature
- feature_maps : FeatureMapping::FeatureMappingInfo
- feature_name_ : AbsoluteQuantitationMethod
- features : MSstatsFile::AggregatedConsensusInfo, TriqlerFile::AggregatedConsensusInfo
- features_ : FeatureFinderAlgorithm, FeatureFinderAlgorithmPicked, KDTreeFeatureMaps, LayerDataFeature, MRMFeature, MRMFeatureOpenMS, OSWPeptidePrecursor
- fi_fragments_ : FragmentIndex
- fi_peptides_ : FragmentIndex
- fid : SiriusMSFile::CompoundInfo
- field : DataFilters::DataFilter
- file_ : MQEvidence, MQMsms, Bzip2Ifstream, BaseException, HDF5Connector, XMLHandler
- file_current_index_ : Bzip2InputStream, GzipInputStream
- file_dialog_text_ : LayerAnnotatorBase
- file_format_filter_ : InputFile
- file_index : SiriusMSFile::CompoundInfo
- file_level_psm_counts : PeptideAndProteinQuant::ProteinData
- file_name_ : ListEditorDelegate, TOPPASResource, TOPPASScene
- file_origin_idx : IDRipper::RipFileIdentifier
- file_origin_to_idx_ : IDMergerAlgorithm
- file_path_ : DocumentIdentifier, DocumentIdentifierVisualizer
- file_size_ : SourceFile, SourceFileVisualizer
- file_stream_ : CSVWriter
- file_type_ : DocumentIdentifier, DocumentIdentifierVisualizer, SourceFile, SourceFileVisualizer
- filename : ConsensusMap::ColumnHeader, LayerDataBase
- filename_ : MQEvidence, MQMsms, CachedmzML, FASTAContainer< TFI_File >, FIAMSScheduler, INIFileEditorWindow, IndexedMzMLHandler, MzMLSqliteHandler, MzMLSqliteSwathHandler
- fileName_ : ParamEditorDelegate
- filename_ : MSDataSqlConsumer, MzTab::CMMzTabStream, MzTab::IDMzTabStream, OnDiscMSExperiment, OSWFile, ToolsDialog, TOPPASToolConfigDialog, XMLValidator
- filename_cached_ : CachedmzML
- filenames : TOPPASVertex::VertexRoundPackage
- filenames_ : File::TemporaryFiles_, TOPPASVertex::TOPPASFilenames
- files_total_ : TOPPASOutputVertex
- files_written_ : TOPPASOutputVertex
- fileSize_ : FASTAFile
- filestream_ : IndexedMzMLHandler
- fill_data_ : PeakFileOptions
- filled_ : IDMergerAlgorithm
- filter_ : DataFilterDialog
- filter_dock_widget_ : TOPPViewBase
- filter_list_ : TOPPViewBase
- filter_threshold_ : PeptideIdentificationVisualizer, ProteinIdentificationVisualizer
- filters : LayerDataBase
- filters_ : DataFilters, FilterList
- final_MS_ : MassAnalyzerVisualizer
- final_MS_exponent_ : MassAnalyzer
- final_score : ConsensusIDAlgorithm::HitInfo
- finalized_ : QTCluster
- findable_multiple_neighbors : NeighborSeq::NeighborStats
- findable_no_neighbors : NeighborSeq::NeighborStats
- findable_one_neighbor : NeighborSeq::NeighborStats
- findex_ : PeakGroup
- finished_ : TOPPASVertex
- first : ProbablePhosphoSites, TransformationModel::DataPoint
- first_ : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
- first_child : ACNode
- first_column_ : FuzzyStringComparator
- first_name_ : ContactPerson
- first_row_ : NeedlemanWunsch
- first_run_inference_ : MzTab::CMMzTabStream, MzTab::IDMzTabStream
- first_scan : Biosaur2Algorithm::FastHillEntry
- firstname_ : ContactPersonVisualizer
- fit_data_ : MapAlignmentAlgorithmKD
- fit_EMG_ : PeakIntegrator
- fitter_emg1D_params_ : EmgScoring
- five_prime_ : NASequence
- five_prime_gain_ : DigestionEnzymeRNA, RNaseDigestion
- fixed_identifier_ : IDMergerAlgorithm
- fixed_mod : MzIdentMLDOMHandler::ModificationParam, MzTabMetaData
- fixed_modification_ : ModificationDefinition
- fixed_modifications : ProteinIdentification::SearchParameters
- fixed_modifications_ : PepXMLFile, PepXMLFileMascot
- fixed_mods : DBSearchParam
- fixed_mods_ : ModificationDefinitionsSet, MzTab::CMMzTabStream, MzTab::IDMzTabStream
- fixedModNames_ : OpenPepXLAlgorithm
- flag : QcMLFile::QualityParameter
- flag_or_filter_ : MRMFeatureFilter
- flags : LayerDataBase, LightTransition
- flags_ : Annotation1DTextItem
- flashdeconv_output_tags_ : FLASHDeconvTabWidget
- flashdeconv_param_ : FLASHDeconvTabWidget
- flashdeconv_param_outputs_ : FLASHDeconvTabWidget
- flatHierarchy : ParamCWLFile, ParamJSONFile
- flipped : LayerData1DBase
- flipped_y_axis_ : Plot1DWidget
- float_data_arrays_ : Mobilogram, MSChromatogram, MSSpectrum, ProteinIdentification::ProteinGroup
- floats_32 : MzMLHandlerHelper::BinaryData
- floats_64 : MzMLHandlerHelper::BinaryData
- FLR : ProteinModificationSummary::Statistics
- flush_after_ : MSDataSqlConsumer
- flux_ : HPLC
- fm_ : LayerStatisticsFeatureMap, LayerStoreDataFeatureMapVisible
- fmz : SiriusMSFile::CompoundInfo
- followUpScan : IsobaricChannelExtractor::PurityState_
- force_constraints_ : FeatureDistance
- force_default_mods_ : XTandemInfile
- force_invalid_mods_ : TransitionTSVFile
- force_maxquant_compatibility_ : PeakFileOptions
- force_tpp_compatibility_ : PeakFileOptions
- forced_ms_level_ : FLASHDeconvAlgorithm
- format : MzTabMMSRunMetaData, MzTabMSRunMetaData
- format_ : SaveImageDialog
- formula : AccurateMassSearchEngine::MappingEntry_, IdentifiedCompound, NuXLFragmentAdductDefinition, SiriusMSFile::CompoundInfo
- formula2mass : NuXLModificationMassesResult
- formula_ : Adduct, EmpiricalFormula, FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound, Residue, ResidueModification, Ribonucleotide
- found : MassTraceDetection::PeakCandidate
- found_adduct_ : AccurateMassSearchResult
- found_precursor_charge_ : SpectralMatch
- found_precursor_mass_ : SpectralMatch
- fraction : ExperimentalDesign::MSFileSectionEntry
- fraction_ : MSstatsFile::MSstatsLine_, MSstatsFile::MSstatsTMTLine_
- fraction_group : ExperimentalDesign::MSFileSectionEntry
- fraction_identifier_ : ExperimentalSettings, ExperimentalSettingsVisualizer
- frag_annotations : OPXLDataStructs::CrossLinkSpectrumMatch
- frag_charge_ : MSstatsFile::MSstatsLine_
- fragment_annotation : NuXLReportRow
- fragment_annotations : NuXLAnnotatedHit, PeptideSearchEngineFIAlgorithm::AnnotatedHit_, SimpleSearchEngineAlgorithm::AnnotatedHit_
- fragment_annotations_ : PeptideHit
- fragment_charge : TransitionTSVFile::TSVTransition, LightTransition
- fragment_im_window_ : SwathMapMassCorrection
- fragment_ion_ : MSstatsFile::MSstatsLine_
- fragment_ion_codes_ : NucleicAcidSearchEngine
- fragment_lower_mz_ : XTandemInfile
- fragment_mass_error_unit_ : XTandemInfile
- fragment_mass_tolerance : DBSearchParam, ProteinIdentification::SearchParameters
- fragment_mass_tolerance_ : AScore, OpenPepXLAlgorithm, PeptideSearchEngineFIAlgorithm, SimpleSearchEngineAlgorithm, XTandemInfile
- fragment_mass_tolerance_ppm : ProteinIdentification::SearchParameters
- fragment_mass_tolerance_unit_ : PeptideSearchEngineFIAlgorithm, SimpleSearchEngineAlgorithm
- fragment_mass_tolerance_unit_ppm_ : OpenPepXLAlgorithm
- fragment_mass_tolerance_xlinks_ : OpenPepXLAlgorithm
- fragment_mass_type_ : XTandemInfile
- fragment_max_mz_ : FragmentIndex
- fragment_min_mz_ : FragmentIndex
- fragment_modification : TransitionTSVFile::TSVTransition
- fragment_mz : FragmentIndex::Hit
- fragment_mz_ : FragmentIndex::Fragment
- fragment_mz_error_ : MetaboliteSpectralMatching
- fragment_mz_tolerance_ : FragmentIndex
- fragment_mz_tolerance_unit_ppm_ : FragmentIndex
- fragment_mz_window_ : SwathMapMassCorrection
- fragment_mzdelta : TransitionTSVFile::TSVTransition
- fragment_nr : TransitionTSVFile::TSVTransition, LightTransition
- fragment_tolerance : MzIdentMLDOMHandler::SpectrumIdentificationProtocol
- fragment_tolerance_ppm : DBSearchParam
- fragment_tolerance_ppm_ : AScore
- fragment_type : TransitionTSVFile::TSVTransition, LightTransition
- fragment_window_ : SpectraIDViewTab
- fragmentation_method : MzTabMMSRunMetaData, MzTabMSRunMetaData
- fragmenterror_statistics_ : SpectrumAnnotator
- frame_size_ : SavitzkyGolayFilter
- freq_ : IonDetectorVisualizer
- frequency : ProteinModificationSummary::Statistics
- from_ : TOPPASEdge
- fulfilled_ : SemanticValidator
- full_cm_ : LayerStoreDataConsensusMapAll
- full_exp_ : LayerStoreDataPeakMapAll
- full_fm_ : LayerStoreDataFeatureMapAll
- full_id_ : ResidueModification
- full_ids_ : LayerStoreDataIdentAll
- full_meta_ : MSDataSqlConsumer
- full_name : MzTabCVMetaData
- full_name_ : ResidueModification
- fullname : CV
- FullPeptideName : TransitionTSVFile::TSVTransition
- function_ : BaseException
- fwhm_ : MassTrace
- fwhm_end_idx_ : MassTrace
- fwhm_im_avg : MassTrace
- fwhm_meta_idx_ : MassTraceDetection
- fwhm_mz_avg : MassTrace
- fwhm_start_idx_ : MassTrace
- fwhm_threshold_ : TargetedSpectraExtractor
- fwhm_weight_ : TargetedSpectraExtractor
1.9.8 