- n -
- n
: EmgFitter1D::Data
, RANSACParam
- n_
: LinearRegressionWithoutIntercept
- n_buffer_
: Bzip2Ifstream
, GzipIfstream
- n_decoys_
: ConfidenceScoring
- n_detecting_l
: MRMFeatureQC::ComponentGroupQCs
- n_detecting_u
: MRMFeatureQC::ComponentGroupQCs
- n_external_features_
: FeatureFinderIdentificationAlgorithm
- n_external_peps_
: FeatureFinderIdentificationAlgorithm
- n_fractions
: PeptideAndProteinQuant::Statistics
- n_heavy_l
: MRMFeatureQC::ComponentGroupQCs
- n_heavy_u
: MRMFeatureQC::ComponentGroupQCs
- n_hits_
: XQuestResultXMLHandler
, XQuestResultXMLFile
- n_identifying_l
: MRMFeatureQC::ComponentGroupQCs
- n_identifying_u
: MRMFeatureQC::ComponentGroupQCs
- n_internal_features_
: FeatureFinderIdentificationAlgorithm
- n_internal_peps_
: FeatureFinderIdentificationAlgorithm
- n_isotopes_
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
- n_light_l
: MRMFeatureQC::ComponentGroupQCs
- n_light_u
: MRMFeatureQC::ComponentGroupQCs
- n_ms_files
: PeptideAndProteinQuant::Statistics
- n_parts_
: SimpleSVM
- n_peaks
: MorpheusScore::Result
- n_points_
: AbsoluteQuantitationMethod
- n_quantifying_l
: MRMFeatureQC::ComponentGroupQCs
- n_quantifying_u
: MRMFeatureQC::ComponentGroupQCs
- n_samples
: PeptideAndProteinQuant::Statistics
- n_shared_
: FeatureFinderAlgorithmMetaboIdent
- n_spectra_
: SpectrumLookup
- n_study_variables_
: MzTab::CMMzTabStream
- n_term_gain_
: DigestionEnzymeProtein
- n_term_mod_
: AASequence
- N_TERM_MODIFICATION_INDEX
: ModifiedPeptideGenerator
- N_TERMINAL_AA
: PeptideEvidence
- N_TERMINAL_POSITION
: PeptideEvidence
- n_transitions_
: ConfidenceScoring
- n_transitions_l
: MRMFeatureQC::ComponentGroupQCs
- n_transitions_u
: MRMFeatureQC::ComponentGroupQCs
- na_string_
: MSstatsFile
, TriqlerFile
- name
: ControlledVocabulary::CVTerm
, CVTerm::Unit
, DecoyHelper::Result
, FalseDiscoveryRate::DecoyStringHelper::Result
, IdentifiedCompound
, InputFile
, MzIdentMLDOMHandler::AnalysisSoftware
, MzIdentMLDOMHandler::DatabaseInput
, SemanticValidator::CVTerm
, ToolDescriptionInternal
, IsobaricQuantitationMethod::IsobaricChannelInformation
, ItraqConstants::ChannelInfo
, MzTabContactMetaData
, MzTabInstrumentMetaData
, MzTabMAssayMetaData
, MzTabMStudyVariableMetaData
, Param::ParamEntry
, Param::ParamIterator::TraceInfo
, Param::ParamNode
, ParameterInformation
, QcMLFile::Attachment
, QcMLFile::QualityParameter
, RangeStatsType
- name_
: AdductInfo
, Contaminants
, ControlledVocabulary
, CVReference
, CVTerm
, DigestionEnzyme
, Element
, BaseException
, FeatureFinderAlgorithmMetaboIdent::FeatureFinderMetaboIdentCompound
, FeatureSummary
, IdentificationSummary
, IMSElement
, IncludeExcludeTarget
, Instrument
, InstrumentVisualizer
, IdentificationHit
, PTMXMLHandler
, ItraqEightPlexQuantitationMethod
, ItraqFourPlexQuantitationMethod
, LayerDataBase
, MetaInfoDescription
, ModelDescription< D >
, Ms2IdentificationRate
, Ms2SpectrumStats
, MSChromatogram
, MSSpectrum
, MzTabParameter
, QcMLFile
, ReactionMonitoringTransition
, Residue
, ResidueModification
, Ribonucleotide
, RTAlignment
, Sample
, Software
, SpectrumCount
, TIC
, TMTEighteenPlexQuantitationMethod
, TMTElevenPlexQuantitationMethod
, TMTSixPlexQuantitationMethod
, TMTSixteenPlexQuantitationMethod
, TMTTenPlexQuantitationMethod
, ToolInfo
, TOPPASToolVertex
- name_att_
: SemanticValidator
- name_of_file_
: SourceFile
, SourceFileVisualizer
- name_suffix_
: LayerDataBase
- name_to_counter_map_
: StreamHandler
- name_to_index_
: MetaInfoRegistry
- name_to_stream_map_
: StreamHandler
- name_to_type_map_
: StreamHandler
- names_
: ElementDB
, QcMLFile
- names_of_missing_decoy
: PeptideIndexing
- names_of_modeltype
: MZTrafoModel
- names_of_OriginAnnotationFormat
: IDRipper
- names_of_oswlevel
: OSWFile
- names_of_quantmethod
: MassTrace
- names_of_requires
: QCBase
- names_of_residuetype
: Residue
- names_of_toleranceUnit
: QCBase
- names_of_unmatched
: PeptideIndexing
- NamesOfAcquisitionMode
: IonDetector
- NamesOfActivationMethod
: Precursor
- NamesOfActivationMethodShort
: Precursor
- NamesOfAnalyzerType
: MassAnalyzer
- NamesOfAnnotationState
: BaseFeature
- NamesOfChecksumType
: SourceFile
- NamesOfDataType
: DataValue
- NamesOfDerivatizationAgent
: IsotopeLabelingMDVs
- NamesOfInletType
: IonSource
- NamesOfIonizationMethod
: IonSource
- NamesOfIonOpticsType
: Instrument
- NamesOfIsotopeVariant
: Tagging
- NamesOfLabelType
: LayerDataDefs
- NamesOfMassIntensityType
: IsotopeLabelingMDVs
- NamesOfNumpressCompression
: MSNumpressCoder
- NamesOfPeakMassType
: ProteinIdentification
- NamesOfPolarity
: IonSource
- NamesOfProcessingAction
: DataProcessing
- NamesOfReflectronState
: MassAnalyzer
- NamesOfResolutionMethod
: MassAnalyzer
- NamesOfResolutionType
: MassAnalyzer
- NamesOfSampleState
: Sample
- NamesOfScanDirection
: MassAnalyzer
- NamesOfScanLaw
: MassAnalyzer
- NamesOfScanMode
: InstrumentSettings
- NamesOfScoringMatrices
: NeedlemanWunsch
- NamesOfSpecificity
: EnzymaticDigestion
- NamesOfSpecificityType
: Modification
- NamesOfSpectrumType
: SpectrumSettings
- NamesOfType
: IonDetector
- namesToIds_
: ControlledVocabulary
- nan_
: SVOutStream
- native_id
: SpectrumMetaDataLookup::SpectrumMetaData
- native_id_
: ChromatogramSettings
, SpectrumSettings
, SpectrumSettingsVisualizer
- native_id_accession
: SiriusMSFile::AccessionInfo
- native_id_type
: SiriusMSFile::AccessionInfo
- native_id_type_
: SourceFile
, SourceFileVisualizer
- native_id_type_accession_
: SourceFile
- native_ids
: SiriusMSFile::CompoundInfo
- native_ids_id
: SiriusMSFile::CompoundInfo
- native_spectrum_name_
: PepXMLFile
- nativeid_to_index_
: QCBase::SpectraMap
- near_
: Plot3DOpenGLCanvas
- nearest_neighbour_index_
: MinimumDistance
- needle_count_
: ACTrie
- needle_index
: Hit
- needle_length
: Hit
- needs_
: TOPPViewMenu::ActionRequirement_
- neg_
: ROCCurve
- neg_adducts_
: AccurateMassSearchEngine
- neg_adducts_fname_
: AccurateMassSearchEngine
- neg_charges_
: Compomer
- negative_iso_peaks_
: PeakGroup
- negative_mode_
: MetaboliteFeatureDeconvolution
- negative_prior_
: PosteriorErrorProbabilityModel
- neighbor_stats_
: NeighborSeq
- neighbors_
: QTCluster::BulkData
- nesting_level_
: MzXMLHandler
- net_charge_
: Compomer
- network_manager_
: TOPPASBase
- network_reply_
: TOPPASBase
- neutral_loss_average_masses_
: ResidueModification
- neutral_loss_avg_masses_
: UnimodXMLHandler
- neutral_loss_diff_formula_
: UnimodXMLHandler
- neutral_loss_diff_formulas_
: UnimodXMLHandler
, ResidueModification
- neutral_loss_mono_masses_
: UnimodXMLHandler
, ResidueModification
- neutral_losses_for_ions_
: SequestInfile
- new_code_
: Ribonucleotide
- new_eluent_
: GradientVisualizer
- new_node
: _Alloc_base< _Tp, _Alloc >::NoLeakAlloc
- new_score_
: IDScoreSwitcherAlgorithm
- new_score_type_
: IDScoreSwitcherAlgorithm
- new_timepoint_
: GradientVisualizer
- newdescription_
: MetaInfoVisualizer
- newkey_
: MetaInfoVisualizer
- newline_
: SVOutStream
- newRowButton_
: ListEditor
- newvalue_
: MetaInfoVisualizer
- next_consumer_
: MSDataAggregatingConsumer
- next_index_
: MetaInfoRegistry
- next_v
: IDBoostGraph::dfs_ccsplit_visitor
- nextrow_
: GradientVisualizer
, MetaInfoVisualizer
- nn_threshold
: MRMFeatureSelector::SelectorParameters
- no_checks_
: IdentificationData
- no_exceptions
: Summary
- no_mzml_
: MzCalibration
- no_precursors
: IDMapper::SpectraIdentificationState
- no_rt_error_
: MascotXMLHandler
- NoCleavage
: EnzymaticDigestion
- node_offset_
: TOPPASBase
- nodes
: Param::ParamNode
- nodes_
: SimpleSVM
- noID_penalty_
: QTClusterFinder
- noise_for_empty_window_
: SignalToNoiseEstimatorMeanIterative< Container >
, SignalToNoiseEstimatorMedian< Container >
- noise_threshold_constant_
: MetaboTargetedAssay
- noise_threshold_int_
: MassTraceDetection
- noloss_regex_
: SpectrumAnnotator
- nominal_mass_
: IMSIsotopeDistribution
- norm_factor
: FeatureDistance::DistanceParams_
- norm_rt_score
: OpenSwath_Scores
- normalization_enabled_
: IsobaricQuantifier
- normalize_xcorr_
: SequestInfile
- normalized_experimental_rt
: OpenSwath_Scores
- norms_
: FLASHDeconvHelperStructs::PrecalculatedAveragine
- note
: TransformationModel::DataPoint
- np_compression
: MzMLHandlerHelper::BinaryData
, MSNumpressCoder::NumpressConfig
- np_config_fda_
: PeakFileOptions
- np_config_int_
: PeakFileOptions
- np_config_mz_
: PeakFileOptions
- nr_charges_
: DiaPrescore
- nr_children
: ACNode
- nr_isotopes_
: DiaPrescore
- nr_iterations_
: PeakPickerIterative
- nr_ms1_spectra_
: CachedSwathFileConsumer
, MzMLSwathFileConsumer
, SwathQC
- nr_ms2_spectra_
: CachedSwathFileConsumer
, MzMLSwathFileConsumer
- nr_partitions_
: QTClusterFinder
- nr_peaks
: OpenSwath_Scores
- nr_windows
: SignalToNoiseEstimatorMedianRapid::NoiseEstimator
- nrPrefractionationGroups_
: IDBoostGraph
- nt_regex_
: SpectrumAnnotator
- NTerm_loss_formulas_
: Residue
- NTerm_loss_names_
: Residue
- nucleic_acid_data_
: MzTab
- nucleic_acid_search_engine_score
: MzTabMetaData
- nucleotide_reading_frame_
: SequestInfile
- num_frags_
: SequestOutfile
- num_interest
: DBSuitability::SuitabilityData
- num_iso_peaks_mean
: OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_linear_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_linear_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_xlinks_alpha
: OPXLDataStructs::CrossLinkSpectrumMatch
- num_iso_peaks_mean_xlinks_beta
: OPXLDataStructs::CrossLinkSpectrumMatch
- num_maps_
: KDTreeFeatureMaps
, QTCluster::BulkData
, QTClusterFinder
- num_ms2_spectra
: Ms2IdentificationRate::IdentificationRateData
- num_oligos_distinct_ms_run
: MzTabNucleicAcidSectionRow
- num_oligos_unique_ms_run
: MzTabNucleicAcidSectionRow
- num_osms_ms_run
: MzTabNucleicAcidSectionRow
- NUM_PARAMS_
: EGHTraceFitter
, GaussTraceFitter
- num_peptide_identification
: Ms2IdentificationRate::IdentificationRateData
- num_peptides_distinct_ms_run
: MzTabProteinSectionRow
- num_peptides_unique_ms_run
: MzTabProteinSectionRow
- num_psms_ms_run
: MzTabProteinSectionRow
- num_re_ranked
: DBSuitability::SuitabilityData
- num_top_db
: DBSuitability::SuitabilityData
- num_top_novo
: DBSuitability::SuitabilityData
- num_top_novo_corr
: DBSuitability::SuitabilityData
- number
: FuzzyStringComparator::StreamElement_
- number_
: Sample
- number_ms2_empty
: IsobaricQuantifierStatistics
- number_ms2_total
: IsobaricQuantifierStatistics
- number_of_datapoints
: LayerDataDefs::ProjectionData::Summary
- number_of_max_aa_
: MassDecomposition
- number_of_missed_cleavages_
: XTandemInfile
- number_of_runs_
: ConsensusIDAlgorithm
- number_of_threads_
: XTandemInfile
- number_top_hits_
: OpenPepXLAlgorithm
, OpenPepXLLFAlgorithm
- numerator_ref_
: ConsensusFeature::Ratio
- numpressErrorTolerance
: MSNumpressCoder::NumpressConfig
- numpressFixedPoint
: MSNumpressCoder::NumpressConfig