- r -

• RadialDistributionFunction() : BALL::RadialDistributionFunction
• RadiusRuleProcessor() : BALL::RadiusRuleProcessor
• RandomAccessIterator() : BALL::RandomAccessIterator< Container, DataType, Position, Traits >
• RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
• randomDouble() : BALL::RandomNumberGenerator
• RandomEvaluation() : BALL::RandomEvaluation
• randomGaussian() : BALL::RandomNumberGenerator
• randomInteger() : BALL::RandomNumberGenerator
• randomize() : BALL::DoubleGene , BALL::GenericGene , BALL::GeneticIndividual , BALL::QuaternionGene
• RandomNumberGenerator() : BALL::RandomNumberGenerator
• randomUniform() : BALL::RandomNumberGenerator
• RaytraceableContourSurfaceDialog() : BALL::VIEW::RaytraceableContourSurfaceDialog
• RaytraceableGrid() : BALL::VIEW::RaytraceableGrid
• RaytraceableGridController() : BALL::VIEW::RaytraceableGridController
• rbegin() : BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Gradient , BALL::PDBRecords , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::String
• rbeginBond() : BALL::Atom
• rbeginChildComposite() : BALL::Composite
• rbeginComposite() : BALL::Composite
• rdbuf() : BALL::LogStream
• RDFIntegrator() : BALL::RDFIntegrator
• RDFParameter() : BALL::RDFParameter
• RDFSection() : BALL::RDFSection
• reactTo() : BALL::VIEW::PyWidget
• reactToMessages_() : BALL::VIEW::MolecularControl
• read() : BALL::AmiraMeshFile , BALL::AntechamberFile , BALL::BitVector , BALL::Bruker1DFile , BALL::Bruker2DFile , BALL::CCP4File , BALL::CIFFile , BALL::DCDFile , BALL::DockResultFile , BALL::DSN6File , BALL::GAFFCESParser , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile , BALL::HMOFile , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile , BALL::MOL2File , BALL::MOLFile , BALL::MOPACOutputFile , BALL::NMRStarFile , BALL::Options , BALL::PDBFile , BALL::PreciseTime , BALL::PropertyManager , BALL::SDFile , BALL::Selectable , BALL::TimeStamp , BALL::TrajectoryFile , BALL::TRRFile , BALL::TVector3< T > , BALL::XYZFile
• readACFile() : BALL::VIEW::MolecularFileDialog
• readAdditionalGridSetFromFile() : BALL::GridBasedScoring
• readAndInitBondAnglesFromFile_() : BALL::HybridisationProcessor
• readAtomLine_() : BALL::MOLFile
• readAtomPenalties_() : BALL::AssignBondOrderProcessor
• readAtomSection_() : BALL::MOL2File
• readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
• readBinValueasFloat_() : BALL::CCP4File
• readBinValueasInt_() : BALL::CCP4File
• readBondLengthsFromFile_() : BALL::BuildBondsProcessor
• readBondLine_() : BALL::MOLFile
• readBondSection_() : BALL::MOL2File
• readChargeData_() : BALL::HMOFile
• readClassInformationFromFile() : BALL::QSAR::ClassificationModel
• readCommentSection_() : BALL::MOL2File
• readConversionTable_() : BALL::Peptides::NameConverter
• readCountsLine_() : BALL::MOLFile
• readCSVFile() : BALL::QSAR::QSARData
• readCTAB_() : BALL::MOLFile
• readDCDFile() : BALL::ConformationSet
• readDELIMITER_() : BALL::KCFFile
• readDescriptorInformation() : BALL::QSAR::Model
• readDescriptorInformationFromFile() : BALL::QSAR::Model , BALL::QSAR::RegressionModel
• readDockResult() : BALL::DockResult
• readEDGE_() : BALL::KCFFile
• readElementData_() : BALL::HMOFile
• readEmpiricalParameters() : BALL::MMFF94ESParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94StretchParameters
• readENTRY_() : BALL::KCFFile
• readFeatureSelectionConfiguration() : BALL::QSAR::ConfigIO
• readFiles() : BALL::VIEW::MolecularFileDialog
• readFirstRecord() : BALL::PDBFile
• readFloat_() : BALL::DCDFile
• readFromFile() : BALL::QSAR::ALLModel , BALL::QSAR::ClassificationValidation , BALL::QSAR::KernelModel , BALL::QSAR::LDAModel , BALL::QSAR::LogitModel , BALL::QSAR::Model , BALL::QSAR::NBModel , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation , BALL::QSAR::SNBModel , BALL::QSAR::Validation , BALL::ScoreGridSet , BALL::SnapShotManager
• readFromString() : BALL::VIEW::Camera
• readHeader() : BALL::AmiraMeshFile , BALL::CCP4File , BALL::DCDFile , BALL::DSN6File , BALL::TrajectoryFile , BALL::TRRFile
• readHeaderValue_() : BALL::DSN6File
• readHINFile() : BALL::VIEW::MolecularFileDialog
• readInputConfiguration() : BALL::QSAR::ConfigIO
• readInputPartitioningConfiguration() : BALL::QSAR::ConfigIO
• readInvalidRecord() : BALL::PDBFile
• readKernelParametersFromFile() : BALL::QSAR::KernelModel
• readLabels() : BALL::QSAR::ClassificationModel
• readLigand() : BALL::DockResultFile
• readLights_() : BALL::VIEW::Scene
• readLine() : BALL::LineBasedFile , BALL::PDBFile
• readMatrix() : BALL::QSAR::Model , BALL::QSAR::QSARData
• readModelConfiguration() : BALL::QSAR::ConfigIO
• readModelParametersFromFile() : BALL::QSAR::Model
• readMOL2File() : BALL::VIEW::MolecularFileDialog
• readMoleculeSection_() : BALL::MOL2File
• readMOLFile() : BALL::VIEW::MolecularFileDialog
• readMSMSFile() : BALL::TSurface< T >
• readNextHeader() : BALL::TRRFile
• readNextRecord() : BALL::PDBFile
• readNODE_() : BALL::KCFFile
• readNodeData_() : BALL::HMOFile
• readObject() : BALL::PersistenceManager
• readObjectArray() : BALL::PersistenceManager
• readObjectPointer() : BALL::PersistenceManager
• readObjectPointerArray() : BALL::PersistenceManager
• readObjectReference() : BALL::PersistenceManager
• readObjectSmartPointer() : BALL::PersistenceManager
• readOptionFile() : BALL::DockingAlgorithm , BALL::Options
• readOptions() : BALL::AStarBondOrderStrategy , BALL::BondOrderAssignmentStrategy , BALL::BranchAndBoundBondOrderStrategy , BALL::FPTBondOrderStrategy , BALL::ILPBondOrderStrategy , BALL::KGreedyBondOrderStrategy
• readOptions_() : BALL::AssignBondOrderProcessor , BALL::SideChainPlacementProcessor
• readParameters() : BALL::MMFF94ParametersBase
• readPDBFile() : BALL::VIEW::MolecularFileDialog
• readPredictionConfiguration() : BALL::QSAR::ConfigIO
• readPreferenceEntries() : BALL::VIEW::ColoringSettingsDialog , BALL::VIEW::MainControlPreferences , BALL::VIEW::PluginDialog , BALL::VIEW::PreferencesEntry , BALL::VIEW::PythonSettings
• readPrimitive() : BALL::PersistenceManager
• readPropertyBlock_() : BALL::SDFile
• readPropertyNames() : BALL::QSAR::QSARData
• readPseudoAtomsConversionTable_() : BALL::Peptides::NameConverter
• readReceptor() : BALL::DockResultFile
• readRecords() : BALL::PDBFile
• readResponseTransformationFromFile() : BALL::QSAR::Model
• readResults() : BALL::DockResultFile
• readScalingFactors() : BALL::GeneralizedBornModel
• readSCWRLBackboneDependentLibraryFile() : BALL::SCWRLRotamerFile
• readSCWRLBackboneIndependentLibraryFile() : BALL::SCWRLRotamerFile
• readSDFile() : BALL::QSAR::QSARData , BALL::VIEW::MolecularFileDialog
• readSection() : BALL::ParamFile
• readSetSection_() : BALL::MOL2File
• readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
• readSize_() : BALL::DCDFile
• readStorableObject() : BALL::PersistenceManager
• readSubstructureSection_() : BALL::MOL2File
• readSymmetryRecords() : BALL::CCP4File
• readTrainingData() : BALL::QSAR::Model
• readTrainingResult() : BALL::QSAR::KernelModel
• readTransformationsFromFile_() : BALL::PoseClustering
• readUnknownRecord() : BALL::PDBFile
• readUntil_() : BALL::HMOFile
• readValidationConfiguration() : BALL::QSAR::ConfigIO
• readVector() : BALL::QSAR::Model
• readVector_() : BALL::DCDFile
• readXYZFile() : BALL::VIEW::MolecularFileDialog
• rebuildAllRepresentations() : BALL::VIEW::RepresentationManager
• recalibrate() : BALL::Rescoring
• receivedData() : BALL::SimpleDownloaderHelper::DLHelper
• receiveOptions() : BALL::MPISupport
• receivePersistenceStream_() : BALL::MPISupport
• receivesBufferUpdates() : BALL::VIEW::RenderSetup
• receiveSystem() : BALL::MPISupport
• Receptor() : BALL::Receptor
• recieve() : BALL::RingPerceptionProcessor::TNode_
• Reciprocal() : BALL::Reciprocal< Function, DataType >
• reconstructFragment() : BALL::ReconstructFragmentProcessor
• ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
• RecordHELIX() : BALL::PDB::RecordHELIX
• RecordMASTER() : BALL::PDB::RecordMASTER
• RecordSEQRES() : BALL::PDB::RecordSEQRES
• RecordSHEET() : BALL::PDB::RecordSHEET
• RecordSSBOND() : BALL::PDB::RecordSSBOND
• RecordTURN() : BALL::PDB::RecordTURN
• RecStruct_() : BALL::SmartsMatcher::RecStruct_
• RecStructCore_() : BALL::SmartsMatcher::RecStructCore_
• RecStructPool_() : BALL::SmartsMatcher::RecStructPool_
• recurseGeneration_() : BALL::VIEW::MolecularControl
• redock_() : BALL::VIEW::DockResultDialog
• redraw() : BALL::DockProblem , BALL::EvolutionaryDocking
• redrawAllRepresentations() : BALL::VIEW::MainControl
• ReducedSurface() : BALL::ReducedSurface
• reduceSelection_() : BALL::VIEW::MainControl
• reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
• ReferenceArea() : BALL::ReferenceArea
• refine() : BALL::TriangulatedSphere
• refineClustering() : BALL::PoseClustering
• refineGuidePoints_() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
• refineModelParts_() : BALL::VIEW::AddBackboneModel
• reflectivenessFactorChanged() : BALL::VIEW::MaterialSettings
• refresh() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderTarget , BALL::VIEW::TRenderWindow< taPixelDatatype >
• registerAdvancedParameters() : BALL::CommandlineParser
• registerAt() : BALL::LogStreamNotifier
• registerChildEntry() : BALL::VIEW::PluginDialog
• registerClass() : BALL::PersistenceManager
• registerConnectionObject() : BALL::VIEW::ConnectionObject
• registerController() : BALL::VIEW::DatasetControl
• registerFlag() : BALL::CommandlineParser
• registerForHelpSystem() : BALL::VIEW::DockWidget , BALL::VIEW::HelpViewer , BALL::VIEW::ModularWidget
• registerHandler() : BALL::PluginManager
• RegisterHelpSystemMessage() : BALL::VIEW::RegisterHelpSystemMessage
• registerInstance_() : BALL::Embeddable
• registerKernelClasses_() : BALL::PersistenceManager
• registerModule() : BALL::ShiftModel
• registerObject_() : BALL::VIEW::PreferencesEntry
• registerObjectCreator() : BALL::VIEW::ServerWidget
• registerParameter() : BALL::CommandlineParser , BALL::GeneticAlgorithm
• registerPredicate() : BALL::Expression
• registerRenderers_() : BALL::VIEW::Scene
• registerShortcut() : BALL::VIEW::ShortcutRegistry
• registerStandardModules_() : BALL::ShiftModel
• registerStandardPredicates_() : BALL::Expression
• registerThis() : BALL::Embeddable
• registerTransformation() : BALL::File , BALL::TransformationManager
• registerTypes_() : BALL::MPISupport
• registerWidget() : BALL::VIEW::ModularWidget
• registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
• registerWidgets_() : BALL::VIEW::PreferencesEntry
• Registry() : BALL::QSAR::Registry
• RegistryEntry() : BALL::QSAR::RegistryEntry
• RegressionModel() : BALL::QSAR::RegressionModel
• RegressionValidation() : BALL::QSAR::RegressionValidation
• RegularData1DWidget() : BALL::VIEW::RegularData1DWidget
• RegularData2DWidget() : BALL::VIEW::RegularData2DWidget
• RegularData3DController() : BALL::VIEW::RegularData3DController
• RegularExpression() : BALL::RegularExpression
• rehash() : BALL::HashSet< Key >
• ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
• reject() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::EditSingleShortcut , BALL::VIEW::GeometricFitDialog , BALL::VIEW::MMFF94ConfigurationDialog , BALL::VIEW::Preferences , BALL::VIEW::RaytraceableContourSurfaceDialog
• RelatedDB() : BALL::NMRStarFile::MolecularSystem::RelatedDB
• releaseBuffer() : BALL::VIEW::RenderTarget , BALL::VIEW::TRenderWindow< taPixelDatatype >
• RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
• RelNegativePartialCharge() : BALL::RelNegativePartialCharge
• RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
• RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
• RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
• RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
• RelPolarVdWSurface() : BALL::RelPolarVdWSurface
• RelPositivePartialCharge() : BALL::RelPositivePartialCharge
• RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
• RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
• remember() : BALL::FPTBondOrderStrategy::DPBackTracking_
• remove() : BALL::AtomContainer , BALL::Chain , BALL::Directory , BALL::File , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HashGrid3< Item > , BALL::HashGridBox3< Item > , BALL::List< Value > , BALL::LogStream , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::RSFace , BALL::SecondaryStructure , BALL::StringHashMap< Value > , BALL::System , BALL::Triangle , BALL::TriangulatedSurface , BALL::VIEW::CompositeManager , BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager
• remove_() : BALL::VIEW::MainControl
• removeAll() : BALL::HashGridBox3< Item >
• removeChild() : BALL::Composite , BALL::ConnectedToPredicate::CTPNode , BALL::ResourceEntry
• removeClippingPlane() : BALL::VIEW::RepresentationManager
• removeComponent() : BALL::ComposedEnergyProcessor , BALL::ForceField , BALL::ScoringFunction
• removeComposite() : BALL::VIEW::MolecularControl
• removedComposite() : BALL::VIEW::RepresentationManager
• removeDirectory() : BALL::VIEW::PluginDirectoryModel
• removeEmptyDescriptors() : BALL::QSAR::FeatureSelection
• removeEntry() : BALL::VIEW::Preferences
• removeFile_() : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
• removeGrid_() : BALL::VIEW::ModifyRepresentationDialog
• removeGridTextures() : BALL::VIEW::RenderSetup
• removeHavingProperty() : BALL::AtomContainer
• removeHighlyCorrelatedCompounds() : BALL::QSAR::QSARData
• removeHighlyCorrelatedFeatures() : BALL::QSAR::FeatureSelection
• removeHotkey() : BALL::VIEW::PyWidget
• removeInvalidDescriptors() : BALL::QSAR::QSARData
• removeInvalidSubstances() : BALL::QSAR::QSARData
• removeItem_() : BALL::VIEW::GenericControl , BALL::VIEW::Preferences
• removeKey() : BALL::ResourceEntry , BALL::ResourceFile
• removeLightPressed() : BALL::VIEW::LightSettings
• removeLightSource() : BALL::VIEW::Stage
• removeLowResponseCorrelation() : BALL::QSAR::FeatureSelection
• removeMenuEntry() : BALL::VIEW::MainControl
• removeModularWidget() : BALL::VIEW::MainControl
• removeMoleculeOwnership() : BALL::FlexibleMolecule
• removeNotHavingProperty() : BALL::AtomContainer
• removePluginDirectory() : BALL::PluginManager , BALL::VIEW::PluginDialog
• removeRecursive_() : BALL::VIEW::MolecularControl
• removeRepresentation() : BALL::VIEW::GeometricControl , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::RTfactRenderer , BALL::VIEW::TilingRenderer
• removeSelected() : BALL::Composite
• removeSelection() : BALL::VIEW::HotkeyTable
• removeSolvent() : BALL::PeriodicBoundary
• removeTextureFor_() : BALL::VIEW::GLRenderer
• removeUnselected() : BALL::Composite
• rename() : BALL::Directory , BALL::File , BALL::VIEW::SnapshotManagerInterface
• renameRepresentation() : BALL::VIEW::GeometricControl
• renameTo() : BALL::Directory , BALL::File
• rend() : BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Gradient , BALL::PDBRecords , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::String
• rendBond() : BALL::Atom
• rendChildComposite() : BALL::Composite
• rendComposite() : BALL::Composite
• render() : BALL::VIEW::GLRenderer
• render_() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• renderBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderClippingPlane_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderDashedBond_() : BALL::VIEW::AddBallAndStickModel
• renderDisc_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::XML3DRenderer
• Renderer() : BALL::VIEW::Renderer
• renderGrid_() : BALL::VIEW::Scene
• renderGridVisualisation_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderLabel_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::XML3DRenderer
• renderLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• renderMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• renderMultiLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::XML3DRenderer
• renderMultipleBond_() : BALL::VIEW::AddBallAndStickModel
• renderNucleotideOutline_() : BALL::VIEW::AddCartoonModel
• renderOneRepresentation() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer , BALL::VIEW::XML3DRenderer
• renderPoint_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::XML3DRenderer
• renderQuadMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderRepresentation_() : BALL::VIEW::GLRenderer
• renderRepresentations_() : BALL::VIEW::GLRenderer
• renderRuler() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• renderSD_() : BALL::VIEW::SDWidget
• RenderSetup() : BALL::VIEW::RenderSetup
• renderSimpleBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderSphere_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• renderStandardBond_() : BALL::VIEW::AddBallAndStickModel
• renderText() : BALL::VIEW::GLRenderWindow
• renderText_() : BALL::VIEW::Scene
• renderToBuffer() : BALL::VIEW::BufferedRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer
• renderToBuffer_() : BALL::VIEW::RenderSetup
• RenderToBufferFinishedEvent() : BALL::VIEW::RenderToBufferFinishedEvent
• renderToBufferImpl() : BALL::VIEW::BufferedRenderer , BALL::VIEW::CudaVolumeRenderer , BALL::VIEW::RTfactRenderer
• renderTube_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• renderTwoColoredLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• renderTwoColoredTube_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• reopen() : BALL::File
• replace() : BALL::Composite , BALL::String
• replaceGridSetFromFile() : BALL::GridBasedScoring
• Representation() : BALL::VIEW::Representation
• RepresentationManager() : BALL::VIEW::RepresentationManager
• RepresentationMessage() : BALL::VIEW::RepresentationMessage
• requestModeChange() : BALL::VIEW::InteractionMode
• rescale() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• rescore() : BALL::Rescoring
• Rescorer() : BALL::Rescorer
• Rescoring() : BALL::Rescoring
• Rescoring1D() : BALL::Rescoring1D
• Rescoring3D() : BALL::Rescoring3D
• Rescoring4D() : BALL::Rescoring4D
• reserve() : BALL::String
• reset() : BALL::DockingAlgorithm , BALL::Mainframe , BALL::Path , BALL::Timer , BALL::VIEW::DockDialog , BALL::VIEW::EditSingleShortcut , BALL::VIEW::GeometricFitDialog , BALL::VIEW::PropEditorWidget , BALL::VIEW::PropertyEditor
• reset_() : BALL::VIEW::BoolEditorWidget , BALL::VIEW::DoubleEditorWidget , BALL::VIEW::FloatEditorWidget , BALL::VIEW::IntEditorWidget , BALL::VIEW::PDBInfoEditorWidget , BALL::VIEW::PropDeleteWidget , BALL::VIEW::PropEditorWidget , BALL::VIEW::StringEditorWidget , BALL::VIEW::UIntEditorWidget
• resetBondOrders() : BALL::AssignBondOrderProcessor
• resetCamera_() : BALL::VIEW::Scene
• resetCounter() : BALL::TContour< T > , BALL::TContourLine< T >
• resetFlexibleResidues() : BALL::ScoringFunction
• resetLanguageChanged() : BALL::VIEW::MainControlPreferences
• resetOptions() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::AssignBondOrderConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::MMFF94ConfigurationDialog
• resetPositions() : BALL::AtomVector
• resetPredicate() : BALL::AtomContainerIteratorTraits , BALL::AtomIteratorTraits , BALL::ChainIteratorTraits , BALL::FragmentIteratorTraits , BALL::MoleculeIteratorTraits , BALL::NucleicAcidIteratorTraits , BALL::NucleotideIteratorTraits , BALL::PDBAtomIteratorTraits , BALL::ProteinIteratorTraits , BALL::ResidueIteratorTraits , BALL::SecondaryStructureIteratorTraits
• resetPressed() : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
• resetRepresentationsForRenderer_() : BALL::VIEW::Scene
• resetResiduePositions() : BALL::ScoringFunction
• resetScoring() : BALL::ConformationSet
• resetTo_pressed() : BALL::VIEW::UndoManagerDialog
• resetTracking() : BALL::VIEW::Scene
• Residue() : BALL::PDB::Residue , BALL::Residue
• ResidueChecker() : BALL::ResidueChecker
• ResidueIteratorTraits() : BALL::ResidueIteratorTraits
• ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
• ResidueNumberColorProcessor() : BALL::VIEW::ResidueNumberColorProcessor
• ResidueRotamerSet() : BALL::ResidueRotamerSet
• residuesAreConnected_() : BALL::VIEW::AddBackboneModel
• ResidueTorsions() : BALL::ResidueTorsions
• ResidueTypeColorProcessor() : BALL::VIEW::ResidueTypeColorProcessor
• resize() : BALL::AtomVector , BALL::PDBRecords , BALL::String , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::FrameBufferFormat , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::MainControl , BALL::VIEW::RenderSetup , BALL::VIEW::RenderTarget , BALL::VIEW::TRenderWindow< taPixelDatatype >
• resized() : BALL::VIEW::FrameBufferFormat
• resizeEvent() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget , BALL::VIEW::Scene , BALL::VIEW::TextEditorWidget
• resizeGrid() : BALL::VIEW::RegularData3DController
• resizeNormals() : BALL::TSurface< T >
• resizeTriangles() : BALL::TSurface< T >
• resizeVertices() : BALL::TSurface< T >
• Resolution() : BALL::VIEW::Resolution
• resolvePseudoAtoms() : BALL::Peptides::NameConverter
• ResourceEntry() : BALL::ResourceEntry
• ResourceFile() : BALL::ResourceFile
• restore() : BALL::DockProblem
• restoreDefaultValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
• restoreItem_() : BALL::VIEW::AtomOverview
• restoreRepresentations() : BALL::VIEW::RepresentationManager
• restoreValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
• restoreValues_() : BALL::VIEW::PreferencesEntry
• restoreViewPoint() : BALL::VIEW::Scene
• restoreWindows() : BALL::VIEW::MainControl
• Result() : BALL::Result
• ResultData() : BALL::Result::ResultData
• retrieveHistoryLine_() : BALL::VIEW::PyWidget
• retrieveSymOps_() : BALL::CrystalInfo
• returnPressed() : BALL::VIEW::PyWidget
• reverse() : BALL::String
• revert() : BALL::GraphEdge< Vertex, Edge, Face >
• rewind() : BALL::LineBasedFile
• rfind() : BALL::String
• RGroupAssembler() : BALL::RGroupAssembler
• ribbonModeEnabled() : BALL::VIEW::AddBackboneModel
• ribbonsEnabled() : BALL::VIEW::AddCartoonModel
• right() : BALL::String
• Rigid() : BALL::FlexDefinition
• RigidTransformation() : BALL::PoseClustering::RigidTransformation
• Ring() : BALL::RingAnalyser::Ring
• RingAnalyser() : BALL::RingAnalyser
• RingFinder() : BALL::RingFinder
• ringIsClockwise_() : BALL::SDGenerator
• RingPerceptionProcessor() : BALL::RingPerceptionProcessor
• RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
• Rotamer() : BALL::Rotamer
• RotamerLibrary() : BALL::RotamerLibrary
• rotate() : BALL::RotateBond , BALL::RotateBonds , BALL::TMatrix4x4< T > , BALL::VIEW::Camera , BALL::VIEW::Scene
• rotateAboutView() : BALL::VIEW::Camera
• RotateBond() : BALL::RotateBond
• RotateBonds() : BALL::RotateBonds
• rotateClockwise() : BALL::VIEW::Scene
• rotateComposites() : BALL::VIEW::Scene
• rotateLigandFragment() : BALL::IMGDock
• RotateMode() : BALL::VIEW::RotateMode
• rotateProbeGroup_() : BALL::GridAnalysis
• rotateSystem_() : BALL::VIEW::RotateMode
• rotateSystemClockwise_() : BALL::VIEW::RotateMode , BALL::VIEW::Scene
• rotateVector3Angle_() : BALL::VIEW::GLRenderer
• rotateX() : BALL::TMatrix4x4< T >
• rotateY() : BALL::TMatrix4x4< T >
• rotateZ() : BALL::TMatrix4x4< T >
• RotationalEntropy() : BALL::RotationalEntropy
• RotationAngles_() : BALL::GeometricFit::RotationAngles_
• rowCount() : BALL::VIEW::PluginDirectoryModel , BALL::VIEW::PluginModel , BALL::VIEW::ShortcutTableModel
• rowSelected() : BALL::VIEW::PythonSettings
• RRModel() : BALL::QSAR::RRModel
• RSComputer() : BALL::RSComputer
• RSEdge() : BALL::RSEdge
• RSFace() : BALL::RSFace
• RSVertex() : BALL::RSVertex
• RTfactRenderer() : BALL::VIEW::RTfactRenderer
• RuleEvaluator() : BALL::RuleEvaluator
• RuleProcessor() : BALL::RuleProcessor
• run() : BALL::PyInterpreter , BALL::RSComputer , BALL::SASTriangulator , BALL::SESComputer , BALL::SESSingularityCleaner , BALL::SESTriangulator , BALL::SimpleDownloaderHelper::HelperThread , BALL::SimpleDownloaderHelper::QFtpHackThread , BALL::TCPServerThread , BALL::VIEW::AnimationThread , BALL::VIEW::BALLThread , BALL::VIEW::CalculateFDPBThread , BALL::VIEW::DockingThread , BALL::VIEW::EnergyMinimizerThread , BALL::VIEW::GenerateCrystalThread , BALL::VIEW::MDSimulationThread , BALL::VIEW::RenderSetup , BALL::VIEW::RunPythonThread , BALL::VIEW::ServerWidget::BALLViewServer , BALL::VIEW::UpdateRepresentationThread
• runBondOrderAssignment() : BALL::VIEW::MolecularStructure
• runCommand_() : BALL::VIEW::PyWidget
• runCurrentScript() : BALL::VIEW::PyWidget
• runDocking() : BALL::VIEW::DockingController
• runFile() : BALL::PyInterpreter
• RunGAMESSDialog() : BALL::VIEW::RunGAMESSDialog
• runMinimization() : BALL::VIEW::MolecularStructure
• runningOnVirtualBox() : BALL::VIEW::GLRenderer
• RunPythonThread() : BALL::VIEW::RunPythonThread
• runRescoring() : BALL::Rescorer
• runScoring_() : BALL::VIEW::DockingController
• runString() : BALL::VIEW::PyWidget
• runTest() : BALL::VIEW::TestFramework