- o -

• Object() : BALL::Object
• ObjectCreator() : BALL::ObjectCreator
• OccupancyColorProcessor() : BALL::VIEW::OccupancyColorProcessor
• okPreferencesClicked_() : BALL::VIEW::MainControl
• okPressed() : BALL::VIEW::DockDialog , BALL::VIEW::SetCamera , BALL::VIEW::SetClippingPlane , BALL::VIEW::StereoSettingsDialog
• onClick() : BALL::VIEW::ShortcutTableView
• oneBackwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
• oneForwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
• onItemClicked() : BALL::VIEW::GenericControl , BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl
• onNotify() : BALL::VIEW::ConnectionObject , BALL::VIEW::DatasetControl , BALL::VIEW::DemoTutorialDialog , BALL::VIEW::DisplayProperties , BALL::VIEW::DockingController , BALL::VIEW::GenericControl , BALL::VIEW::GeometricControl , BALL::VIEW::HelpViewer , BALL::VIEW::LabelDialog , BALL::VIEW::MainControl , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::MolecularControl , BALL::VIEW::MolecularFileDialog , BALL::VIEW::MolecularStructure , BALL::VIEW::RegularData1DWidget , BALL::VIEW::RegularData2DWidget , BALL::VIEW::Scene , BALL::VIEW::UndoManagerDialog
• onNotify_() : BALL::VIEW::ConnectionObject
• onNotifyDemo_() : BALL::VIEW::DemoTutorialDialog
• onNotifyRaytracingTutorial_() : BALL::VIEW::DemoTutorialDialog
• onNotifyTutorial_() : BALL::VIEW::DemoTutorialDialog
• open() : BALL::AmiraMeshFile , BALL::CCP4File , BALL::DCDFile , BALL::DSN6File , BALL::File , BALL::HMOFile , BALL::MolFileFactory , BALL::PDBFile , BALL::ResourceFile , BALL::TrajectoryFileFactory , BALL::VIEW::DatasetController , BALL::VIEW::DockResultController , BALL::VIEW::RegularData3DController , BALL::VIEW::TrajectoryController , BALL::VIEW::VectorGridController
• openACFile() : BALL::VIEW::MolecularFileDialog
• OpenBruker1DFile() : BALL::VIEW::OpenBruker1DFile
• OpenBruker2DFile() : BALL::VIEW::OpenBruker2DFile
• openFile() : BALL::VIEW::DatasetControl , BALL::VIEW::MainControl , BALL::VIEW::ModularWidget , BALL::VIEW::MolecularFileDialog , BALL::VIEW::OpenBruker1DFile , BALL::VIEW::OpenBruker2DFile , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
• openFile_() : BALL::VIEW::MolecularFileDialog
• openHINFile() : BALL::VIEW::MolecularFileDialog
• openItems() : BALL::VIEW::NewSelectionMessage
• openMOL2File() : BALL::VIEW::MolecularFileDialog
• openMolecularFile() : BALL::VIEW::MolecularFileDialog
• openMOLFile() : BALL::VIEW::MolecularFileDialog
• openPDBFile() : BALL::VIEW::MolecularFileDialog
• OpenSavePreferences() : BALL::VIEW::OpenSavePreferences
• openSDFile() : BALL::VIEW::MolecularFileDialog
• openXYZFile() : BALL::VIEW::MolecularFileDialog
• operationSelected() : BALL::VIEW::EditOperationDialog
• operator BitVector &() : BALL::PropertyManager
• operator bool() : BALL::Bit
• operator char() : BALL::VIEW::ColorUnit
• operator const Position &() : BALL::BaseIterator< Container, DataType, Position, Traits >
• operator delete() : BALL::AutoDeletable
• operator double() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator float() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator int() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator long() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator long double() : BALL::VIEW::ColorUnitHue
• operator new() : BALL::AutoDeletable
• operator short() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator String() : BALL::Substring , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator string &() : BALL::String
• operator string const &() : BALL::String
• operator T() : BALL::TAngle< T >
• operator unsigned char() : BALL::VIEW::ColorUnit
• operator unsigned int() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator unsigned long() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator unsigned short() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator!=() : BALL::Atom::BondIteratorTraits , BALL::Atom , BALL::AtomContainer , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::Bit , BALL::BitVector , BALL::Bond , BALL::Chain , BALL::Composite::AncestorIteratorTraits , BALL::Composite::ChildCompositeIteratorTraits , BALL::Composite::CompositeIteratorTraits , BALL::Composite , BALL::CompositeIteratorTraits , BALL::Conformation , BALL::CosineTorsion::Values , BALL::Directory , BALL::EdgeItem< Node, Edge > , BALL::Element , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::EnumeratorIndex , BALL::ExpressionTree , BALL::File , BALL::Fragment , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::HashGrid3< Item > , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashGridBox3< Item > , BALL::HashSet< Key >::IteratorTraits , BALL::HashSet< Key > , BALL::INIFile::IteratorTraits_ , BALL::JCAMPFile::JCAMPValue , BALL::JCAMPFile , BALL::JohnsonBoveyShiftProcessor::Ring , BALL::LineBasedFile , BALL::List< Value > , BALL::Molecule , BALL::NamedProperty , BALL::NMRStarFile , BALL::NodeItem< Node, Edge > , BALL::NucleicAcid , BALL::Nucleotide , BALL::Object , BALL::Options , BALL::PDBAtom , BALL::PDBInfo , BALL::PDBRecords , BALL::PropertyManager , BALL::Protein , BALL::QuadraticImproperTorsion::Values , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::Residue , BALL::ResidueTorsions::Data , BALL::ResourceEntry::IteratorTraits_ , BALL::ResourceEntry , BALL::ResourceFile , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SecondaryStructure , BALL::Selectable , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::String , BALL::StringHashMap< Value > , BALL::Substring , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::Timer , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::Triple< T1, T2, T3 > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TSurface< T >::Triangle , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::VIEW::ChannelFormat , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::FrameBufferFormat , BALL::VIEW::PixelFormat
• operator%() : BALL::TVector3< T >
• operator%=() : BALL::TVector3< T >
• operator&() : BALL::BitVector , BALL::HashSet< Key >
• operator&=() : BALL::BitVector , BALL::HashSet< Key >
• operator()() : BALL::AddHydrogenProcessor , BALL::Addition< First, Second, DataType > , BALL::AnisotropyShiftProcessor , BALL::AromaticBondsPredicate , BALL::AromaticityProcessor , BALL::AssignBondOrderProcessor , BALL::AssignChargeProcessor , BALL::AssignRadiusProcessor , BALL::AssignTypeNameProcessor , BALL::AssignTypeProcessor , BALL::AtomNamePredicate , BALL::AtomTypePredicate , BALL::AxialPredicate , BALL::BackBonePredicate , BALL::BinaryPredicate< T1, T2 > , BALL::BinaryProcessor< T1, T2 > , BALL::BindingPocketProcessor , BALL::BitVector , BALL::BoundingBoxProcessor , BALL::BuildBondsProcessor , BALL::ChainPredicate , BALL::ChargePredicate , BALL::ChargeRuleProcessor , BALL::ClearChargeProcessor , BALL::ClearRadiusProcessor , BALL::ClearShiftProcessor , BALL::Comparator< T > , BALL::Conformation4C1Predicate , BALL::ConnectedComponentsProcessor , BALL::ConnectedToPredicate , BALL::ConstantFunction< constant_template > , BALL::ConstBinaryProcessor< T1, T2 > , BALL::ConstUnaryProcessor< T > , BALL::CreateSpectrumProcessor , BALL::CubicFunction< Function, DataType > , BALL::CubicSpline1D , BALL::CubicSpline2D , BALL::Descriptor , BALL::DisulfidBondProcessor , BALL::Division< First, Second, DataType > , BALL::DockResult::Compare_ , BALL::DockResult , BALL::DoubleBondsPredicate , BALL::EFShiftProcessor , BALL::ElectrostaticPotentialCalculator , BALL::ElementPredicate , BALL::EmpiricalHSShiftProcessor , BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_ , BALL::EnergeticEvaluation , BALL::EnergyProcessor , BALL::Expression , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::FalsePredicate , BALL::ForceFieldEvaluation , BALL::FPTBondOrderStrategy::DPBackTracking_::StateComparator_ , BALL::FPTBondOrderStrategy::DPJoinMapComparator_ , BALL::FPTBondOrderStrategy::EdgeComparator_ , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::FragmentDB::BuildBondsProcessor , BALL::FragmentDB::NormalizeNamesProcessor , BALL::FragmentDistanceCollector , BALL::GAFFCESParser::APSMatcher , BALL::GAFFCESParser::CESPredicate , BALL::GAFFTypeProcessor , BALL::GeometricCenterProcessor , BALL::GRAPH::EditableEdgeCopier< Graph1, Graph2 > , BALL::GRAPH::EditableVertexCopier< Graph1, Graph2 > , BALL::HaighMallionShiftProcessor , BALL::HBondProcessor , BALL::HBondShiftProcessor , BALL::HybridisationProcessor , BALL::InRingPredicate , BALL::JohnsonBoveyShiftProcessor , BALL::KernelPredicate< T > , BALL::KernelPredicate< Atom > , BALL::KernelPredicate< Chain > , BALL::KernelPredicate< Fragment > , BALL::KernelPredicate< Molecule > , BALL::KernelPredicate< Protein > , BALL::KernelPredicate< Residue > , BALL::MMFF94ChargeProcessor , BALL::MoleculePredicate , BALL::MutableConstant< DataType > , BALL::MutablePower< Function, DataType > , BALL::NMRStarFile::BALLToBMRBMapper , BALL::NucleicAcidPredicate , BALL::NucleotidePredicate , BALL::NumberOfBondsPredicate , BALL::NumericalSAS , BALL::Pair6_12RDFIntegrator , BALL::PairExpRDFIntegrator , BALL::ParsedFunction< arg > , BALL::PartialChargeProcessor , BALL::PeptideCapProcessor , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::PoseClustering::ClusterTreeNodeComparator , BALL::PoseClustering::ClusterTreeWriter_ , BALL::Product< First, Second, DataType > , BALL::ProteinPredicate , BALL::RadialDistributionFunction , BALL::RadiusRuleProcessor , BALL::RandomCoilShiftProcessor , BALL::RandomEvaluation , BALL::RDFIntegrator , BALL::Reciprocal< Function, DataType > , BALL::ReconstructFragmentProcessor , BALL::ResidueChecker , BALL::ResidueIDPredicate , BALL::ResiduePredicate , BALL::ResidueRotamerSet::RotamerProbabilityGreaterThan_ , BALL::RingAnalyser , BALL::RingFinder , BALL::RingPerceptionProcessor , BALL::RuleEvaluator , BALL::SDGenerator::AtomComparator , BALL::SecondaryStructurePredicate , BALL::SecondaryStructureProcessor , BALL::SelectedPredicate , BALL::Selector , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModel , BALL::SideChainPlacementProcessor , BALL::SimpleExperiment1D , BALL::SingleBondsPredicate , BALL::SMARTSPredicate , BALL::SolventPredicate , BALL::Sp2HybridizedPredicate , BALL::Sp3HybridizedPredicate , BALL::SpHybridizedPredicate , BALL::SquareFunction< Function, DataType > , BALL::String , BALL::Subtraction< First, Second, DataType > , BALL::SurfaceProcessor , BALL::TMatrix4x4< T > , BALL::TransformationProcessor , BALL::TranslationProcessor , BALL::TreeWidth< UndirectedGraph >::BagContentWriter , BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap > , BALL::TreeWidthImplementation< EditableGraph >::FillInHeuristic , BALL::TreeWidthImplementation< EditableGraph >::GeneralLowerBoundAlgorithm< Criterion, Reducer > , BALL::TreeWidthImplementation< EditableGraph >::GreedyX< Criterion > , BALL::TreeWidthImplementation< EditableGraph >::MinorMinWidthCriterion , BALL::TreeWidthImplementation< EditableGraph >::MinorMinWidthReducer , BALL::TreeWidthImplementation< EditableGraph >::TreeDecompositionBuilder< OriginalGraphType > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TripleBondsPredicate , BALL::TruePredicate , BALL::TypenameRuleProcessor , BALL::TypeRuleProcessor , BALL::UnaryPredicate< T > , BALL::UnaryProcessor< T > , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AddLineModel , BALL::VIEW::AddSurfaceModel , BALL::VIEW::AddVanDerWaalsModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AtomDistanceColorProcessor , BALL::VIEW::AtomOverview::ApplyProcessor , BALL::VIEW::AtomOverview::OverviewProcessor , BALL::VIEW::ColorByGridProcessor , BALL::VIEW::ColorProcessor , BALL::VIEW::DockResultDialog::Compare_ , BALL::VIEW::ForceModel , BALL::VIEW::HBondModelProcessor , BALL::VIEW::LabelModel , boost::hash< BALL::Quadruple< T1, T2, T3, T4 > > , boost::hash< BALL::SortedPosition2 > , boost::hash< BALL::SortedPosition3 > , boost::hash< BALL::String > , boost::hash< BALL::Triple< T1, T2, T3 > > , boost::hash< RTpieCpp::InstanceHandle > , boost::hash< RTpieCpp::MeshHandle >
• operator*() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::Gradient , BALL::INIFile::IteratorTraits_ , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator*=() : BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator+() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::INIFile::IteratorTraits_ , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator++() : BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstForwardIterator< Container, DataType, Position, Traits > , BALL::EnumeratorIndex , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::INIFile::IteratorTraits_
• operator+=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::Result , BALL::ScoreGridSet , BALL::String , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TriangulatedSurface , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator-() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator--() : BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::EnumeratorIndex , BALL::INIFile::IteratorTraits_
• operator-=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::ScoreGridSet , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator->() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::LogStream , BALL::RandomAccessIterator< Container, DataType, Position, Traits >
• operator/() : BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator/=() : BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator<() : BALL::Atom::BondIteratorTraits , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Element , BALL::EnumeratorIndex , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::GeneticIndividual , BALL::GeometricFit::Peak_ , BALL::INIFile::Section , BALL::Object , BALL::PartialBondOrderAssignment , BALL::PDBRecords , BALL::Peak< PositionType > , BALL::PreciseTime , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::RotateBond , BALL::SortedPosition2 , BALL::SortedPosition3 , BALL::String , BALL::TAngle< T > , BALL::Timer , BALL::Triple< T1, T2, T3 > , BALL::TVector3< T > , BALL::VIEW::Camera , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::GeometricObject , BALL::VIEW::Hotkey , BALL::VIEW::LightSource , BALL::VIEW::Representation
• operator<<() : BALL::EnumeratorIndex , BALL::GenericMolFile , BALL::PDBFile , BALL::PersistenceManager , BALL::TContourSurface< T >
• operator<=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Element , BALL::EnumeratorIndex , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::Object , BALL::PDBRecords , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::String , BALL::TAngle< T > , BALL::Timer , BALL::Triple< T1, T2, T3 > , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator=() : BALL::Addition< First, Second, DataType > , BALL::AmberFF , BALL::AmberNonBonded , BALL::AromaticityProcessor , BALL::AssignBondOrderProcessor , BALL::Atom::BondIteratorTraits , BALL::Atom , BALL::AtomContainer , BALL::AtomContainerIteratorTraits , BALL::AtomicPolarizabilities , BALL::AtomInformationContent , BALL::AtomIteratorTraits , BALL::AtomTypes , BALL::AtomVector , BALL::BalabanIndexJ , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BinaryFingerprintMethods , BALL::BindingPocketProcessor , BALL::Bit , BALL::BitVector , BALL::Bond , BALL::BondPolarizabilities , BALL::BuildBondsProcessor , BALL::BuriedPolar , BALL::CanonicalMD , BALL::Chain , BALL::ChainIteratorTraits , BALL::CharmmEEF1 , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::CHPI , BALL::CHPISlick , BALL::ClaverieParameter , BALL::ComposedEnergyProcessor , BALL::Composite::AncestorIteratorTraits , BALL::Composite::ChildCompositeIteratorTraits , BALL::Composite::CompositeIteratorTraits , BALL::Composite , BALL::CompositeIteratorTraits , BALL::ConjugateGradientMinimizer , BALL::ConnectivityBase , BALL::ConstForwardIterator< Container, DataType, Position, Traits > , BALL::CosineTorsion , BALL::CubicFunction< Function, DataType > , BALL::Density , BALL::Descriptor , BALL::Directory , BALL::Division< First, Second, DataType > , BALL::DockResult , BALL::DockResult::Scoring_ , BALL::DoubleParameter , BALL::Element , BALL::EnergyMinimizer , BALL::EnergyProcessor , BALL::EnumeratorIndex , BALL::Expression , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::ForceField , BALL::ForceFieldParameters , BALL::FormalCharge , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::FPTBondOrderStrategy::AdditionalBagProperties_ , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPBackTracking_ , BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::Fragment , BALL::FragmentDB , BALL::FragmentIteratorTraits , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::GenericParameter , BALL::GeneticAlgorithm , BALL::GeneticIndividual , BALL::Gradient , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::HashGrid3< Item > , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashSet< Key >::IteratorTraits , BALL::HashSet< Key > , BALL::HINFile , BALL::HybridisationProcessor , BALL::HydrogenBond , BALL::HydrogenBondSlick , BALL::HydrophobicVdWSurface , BALL::INIFile::IteratorTraits_ , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile , BALL::LennardJones , BALL::LineBasedFile , BALL::LineSearch , BALL::Lipophilic , BALL::List< Value > , BALL::MeanAtomInformationContent , BALL::MicroCanonicalMD , BALL::MMFF94 , BALL::MMFF94BendParameters , BALL::MMFF94ChargeProcessor , BALL::MMFF94ESParameters , BALL::MMFF94NonBonded , BALL::MMFF94ParametersBase , BALL::MMFF94PlaneParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94StretchParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94VDWParameters , BALL::MOL2File , BALL::MolecularDynamics , BALL::MolecularWeight , BALL::Molecule , BALL::MoleculeIteratorTraits , BALL::MOLFile , BALL::MutableConstant< DataType > , BALL::MutablePower< Function, DataType > , BALL::NamedProperty , BALL::NegativePolarVdWSurface , BALL::NegativeVdWSurface , BALL::NonpolarSolvation , BALL::NucleicAcid , BALL::NucleicAcidIteratorTraits , BALL::Nucleotide , BALL::NucleotideIteratorTraits , BALL::NumberOfAromaticAtoms , BALL::NumberOfAromaticBonds , BALL::NumberOfAtoms , BALL::NumberOfBonds , BALL::NumberOfBoron , BALL::NumberOfBromine , BALL::NumberOfCarbon , BALL::NumberOfChlorine , BALL::NumberOfDoubleBonds , BALL::NumberOfFlourine , BALL::NumberOfHeavyAtoms , BALL::NumberOfHeavyBonds , BALL::NumberOfHydrogen , BALL::NumberOfHydrogenBondAcceptors , BALL::NumberOfHydrogenBondDonors , BALL::NumberOfHydrophobicAtoms , BALL::NumberOfIodine , BALL::NumberOfNitrogen , BALL::NumberOfOxygen , BALL::NumberOfPhosphorus , BALL::NumberOfRotatableBonds , BALL::NumberOfRotatableSingleBonds , BALL::NumberOfSingleBonds , BALL::NumberOfSulfur , BALL::NumberOfTripleBonds , BALL::NumericalIntegrator< Function, DataType > , BALL::Object , BALL::Options , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::Parameters , BALL::ParameterSection , BALL::PartialChargeBase , BALL::PartialChargeProcessor , BALL::PCMCavFreeEnergyProcessor , BALL::PDBAtom , BALL::PDBAtomIteratorTraits , BALL::PDBFile , BALL::PDBInfo , BALL::PDBRecords , BALL::Peak< PositionType > , BALL::PeriodicBoundary , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::PierottiCavFreeEnergyProcessor , BALL::PLP , BALL::PluginManager , BALL::Polarity , BALL::PolarSolvation , BALL::PolarVdWSurface , BALL::PositivePolarVdWSurface , BALL::PositiveVdWSurface , BALL::Potential1210 , BALL::PreciseTime , BALL::PrincipalMomentOfInertia , BALL::PrincipalMomentOfInertiaX , BALL::PrincipalMomentOfInertiaY , BALL::PrincipalMomentOfInertiaZ , BALL::Product< First, Second, DataType > , BALL::PropertyManager , BALL::Protein , BALL::ProteinIteratorTraits , BALL::PTE_ , BALL::PyCompositeList , BALL::PyDatasetVector , BALL::PyIndexList , BALL::QSAR::ClassificationModel , BALL::QSAR::KernelModel , BALL::QSAR::LinearModel , BALL::QSAR::Model , BALL::QSAR::RegressionModel , BALL::QuadraticImproperTorsion , BALL::Quadruple< T1, T2, T3, T4 > , BALL::QuaternionParameter , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFParameter , BALL::RDFSection , BALL::Reciprocal< Function, DataType > , BALL::ReducedSurface , BALL::RegularExpression , BALL::ReissCavFreeEnergyProcessor , BALL::RelHydrophobicVdWSurface , BALL::RelNegativePartialCharge , BALL::RelNegativePolarVdWSurface , BALL::RelNegativeVdWSurface , BALL::RelNumberOfRotatableBonds , BALL::RelNumberOfRotatableSingleBonds , BALL::RelPolarVdWSurface , BALL::RelPositivePartialCharge , BALL::RelPositivePolarVdWSurface , BALL::RelPositiveVdWSurface , BALL::Rescorer , BALL::Residue , BALL::ResidueIteratorTraits , BALL::ResidueRotamerSet , BALL::ResourceEntry::IteratorTraits_ , BALL::ResourceEntry , BALL::Result , BALL::RingPerceptionProcessor , BALL::RombergIntegrator< Function, DataType > , BALL::RotamerLibrary , BALL::RotateBonds , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::RuleEvaluator , BALL::RuleProcessor , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::ScoringFunction , BALL::SCWRLRotamerFile , BALL::SDFile , BALL::SecondaryStructure , BALL::SecondaryStructureIteratorTraits , BALL::Selectable , BALL::Selector , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::ShiftedLVMMMinimizer , BALL::ShiftModel , BALL::ShiftModule , BALL::SideChainPlacementProcessor , BALL::SimpleBase , BALL::SizeOfSSSR , BALL::SLICKEnergy , BALL::SLICKScore , BALL::SmartsMatcher::RecStruct_ , BALL::SmartsMatcher::RecStructCore_ , BALL::SmartsParser::SPAtom::Property , BALL::SnapShot , BALL::SnapShotManager , BALL::SolventDescriptor , BALL::SolventParameter , BALL::SquareFunction< Function, DataType > , BALL::SteepestDescentMinimizer , BALL::StrangLBFGSMinimizer , BALL::String , BALL::StringHashMap< Value > , BALL::Substring , BALL::Subtraction< First, Second, DataType > , BALL::SurfaceBase , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::Templates , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::Timer , BALL::TimeStamp , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TotalNegativePartialCharge , BALL::TotalPositivePartialCharge , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::Triangle , BALL::TrianglePoint , BALL::TriangulatedSAS , BALL::TriangulatedSES , BALL::TriangulatedSphere , BALL::TriangulatedSurface , BALL::Triple< T1, T2, T3 > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::UhligCavFreeEnergyProcessor , BALL::VdWSurface , BALL::VdWVolume , BALL::VertexAdjacency , BALL::VertexAdjacencyEquality , BALL::VIEW::AddBackboneModel::ModelPart , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::Box , BALL::VIEW::Camera , BALL::VIEW::ClippingPlane , BALL::VIEW::ColorExtension2 , BALL::VIEW::ColorHSV , BALL::VIEW::ColorProcessor , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::Dataset , BALL::VIEW::Disc , BALL::VIEW::DockDialog , BALL::VIEW::DockingController , BALL::VIEW::DockingThread , BALL::VIEW::DockResultDialog , BALL::VIEW::GeometricFitDialog , BALL::VIEW::GeometricObject , BALL::VIEW::GridVisualisation , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Hotkey , BALL::VIEW::Label , BALL::VIEW::LightSource , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::VIEW::MeshBuffer , BALL::VIEW::MultiColorExtension , BALL::VIEW::MultiLine , BALL::VIEW::PixelFormat , BALL::VIEW::Point , BALL::VIEW::RenderSetup , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::Scene , BALL::VIEW::SimpleBox , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::UIOperationMode , BALL::VIEW::Vertex2 , BALL::VIEW::Vertex , BALL::ZagrebIndex
• operator==() : BALL::Addition< First, Second, DataType > , BALL::AmberNonBonded , BALL::AmiraMeshFile , BALL::Atom::BondIteratorTraits , BALL::Atom , BALL::AtomContainer , BALL::AtomTypes , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::Bit , BALL::BitVector , BALL::Bond , BALL::CCP4File , BALL::Chain , BALL::CharmmEEF1 , BALL::CharmmNonBonded , BALL::CHPI , BALL::CHPISlick , BALL::ClaverieParameter , BALL::ComposedEnergyProcessor , BALL::Composite::AncestorIteratorTraits , BALL::Composite::ChildCompositeIteratorTraits , BALL::Composite::CompositeIteratorTraits , BALL::Composite , BALL::CompositeIteratorTraits , BALL::Conformation , BALL::CosineTorsion , BALL::CosineTorsion::SingleValues , BALL::CosineTorsion::Values , BALL::CubicFunction< Function, DataType > , BALL::DCDFile , BALL::Directory , BALL::Division< First, Second, DataType > , BALL::DSN6File , BALL::EdgeItem< Node, Edge > , BALL::Element , BALL::EnergyMinimizer , BALL::EnergyProcessor , BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_ , BALL::EnumeratorIndex , BALL::Expression , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::File , BALL::ForceFieldParameters , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::Fragment , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HashGrid3< Item >::BoxIteratorTraits , BALL::HashGrid3< Item > , BALL::HashGridBox3< Item >::BoxIteratorTraits , BALL::HashGridBox3< Item >::DataIteratorTraits , BALL::HashGridBox3< Item > , BALL::HashMap< Key, T > , BALL::HashSet< Key >::IteratorTraits , BALL::HashSet< Key > , BALL::HMOFile::HMOCharge , BALL::HMOFile , BALL::HydrogenBond , BALL::HydrogenBondSlick , BALL::INIFile::IteratorTraits_ , BALL::INIFile , BALL::INIFile::Section , BALL::JCAMPFile::JCAMPValue , BALL::JCAMPFile , BALL::JohnsonBoveyShiftProcessor::Ring , BALL::LennardJones , BALL::LineBasedFile , BALL::Lipophilic , BALL::List< Value > , BALL::MMFF94NonBonded , BALL::Molecule , BALL::MutableConstant< DataType > , BALL::MutablePower< Function, DataType > , BALL::NamedProperty , BALL::NMRStarFile::NMRAtomData , BALL::NMRStarFile , BALL::NodeItem< Node, Edge > , BALL::NonpolarSolvation , BALL::NucleicAcid , BALL::Nucleotide , BALL::NumericalIntegrator< Function, DataType > , BALL::Object , BALL::Options , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpRDFIntegrator , BALL::Parameters , BALL::ParameterSection , BALL::PCMCavFreeEnergyProcessor , BALL::PDBAtom , BALL::PDBInfo , BALL::PDBRecords , BALL::Peak< PositionType > , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::PierottiCavFreeEnergyProcessor , BALL::PLP , BALL::PolarSolvation , BALL::Potential1210 , BALL::PreciseTime , BALL::Product< First, Second, DataType > , BALL::PropertyManager , BALL::Protein , BALL::PTE_ , BALL::QuadraticImproperTorsion , BALL::QuadraticImproperTorsion::Values , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFSection , BALL::Reciprocal< Function, DataType > , BALL::RegularExpression , BALL::ReissCavFreeEnergyProcessor , BALL::Residue , BALL::ResidueTorsions::Data , BALL::ResourceEntry::IteratorTraits_ , BALL::ResourceEntry , BALL::ResourceFile , BALL::RombergIntegrator< Function, DataType > , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::RuleEvaluator , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SecondaryStructure , BALL::Selectable , BALL::Selector , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::SnapShot , BALL::SolventDescriptor , BALL::SolventParameter , BALL::SortedPosition2 , BALL::SortedPosition3 , BALL::SquareFunction< Function, DataType > , BALL::String , BALL::StringHashMap< Value > , BALL::Substring , BALL::Subtraction< First, Second, DataType > , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::Timer , BALL::TimeStamp , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TrajectoryFile , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::Triple< T1, T2, T3 > , BALL::TRRFile , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TSurface< T >::Triangle , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::UhligCavFreeEnergyProcessor , BALL::VIEW::Camera , BALL::VIEW::ChannelFormat , BALL::VIEW::ClippingPlane , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::FrameBufferFormat , BALL::VIEW::GeometricObject , BALL::VIEW::Hotkey , BALL::VIEW::LightSource , BALL::VIEW::PixelFormat , BALL::VIEW::Renderer , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::Stage
• operator>() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Element , BALL::EnumeratorIndex , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::INIFile::Section , BALL::Object , BALL::PDBRecords , BALL::Peak< PositionType > , BALL::PreciseTime , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::String , BALL::TAngle< T > , BALL::Timer , BALL::Triple< T1, T2, T3 > , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator>=() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::Element , BALL::EnumeratorIndex , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::Object , BALL::PDBRecords , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::String , BALL::TAngle< T > , BALL::Timer , BALL::Triple< T1, T2, T3 > , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator>>() : BALL::CIFFile::Datablock , BALL::CIFFile::Datacontent , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::GAMESSDatFile::block , BALL::GenericMolFile , BALL::NMRStarFile::EntryInformation , BALL::NMRStarFile::MolecularSystem::ChemicalUnit , BALL::NMRStarFile::MolecularSystem , BALL::NMRStarFile::MolecularSystem::RelatedDB , BALL::NMRStarFile::MonomericPolymer::HomologDB , BALL::NMRStarFile::MonomericPolymer , BALL::NMRStarFile::NMRAtomData , BALL::NMRStarFile::NMRAtomDataSet , BALL::NMRStarFile::NMRSpectrometer , BALL::NMRStarFile::Sample::Component , BALL::NMRStarFile::Sample , BALL::NMRStarFile::SampleCondition , BALL::NMRStarFile::ShiftReferenceElement , BALL::NMRStarFile::ShiftReferenceSet , BALL::PDBFile , BALL::PersistenceManager , BALL::PersistentObject , BALL::SCWRLRotamerFile , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::TRRFile
• operator[]() : BALL::AtomVector , BALL::BitVector , BALL::ConformationSet , BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits > , BALL::EmpiricalHSShiftProcessor::PropertiesForShift_ , BALL::EnumeratorIndex , BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::DPTable_ , BALL::Gradient , BALL::HashMap< Key, T > , BALL::JCAMPFile , BALL::PDBRecords , BALL::PTE_ , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::ResidueRotamerSet , BALL::ScoreGridSet , BALL::String , BALL::Substring , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TMatrix4x4< T > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::VIEW::PixelFormat , BALL::VIEW::ShortcutRegistry
• operator^() : BALL::BitVector
• operator^=() : BALL::BitVector
• operator|() : BALL::BitVector , BALL::HashSet< Key >
• operator|=() : BALL::BitVector , BALL::HashSet< Key >
• operator~() : BALL::BitVector
• OPLSModel() : BALL::QSAR::OPLSModel
• optimize() : BALL::DNAMutator , BALL::Mutator , BALL::SideChainOptimizer
• optimizeCapPosition() : BALL::PeptideCapProcessor
• optimizeGridSize_() : BALL::GeometricFit
• optimizeParameters() : BALL::QSAR::ALLModel , BALL::QSAR::KNNModel , BALL::QSAR::KPLSModel , BALL::QSAR::Model , BALL::QSAR::OPLSModel , BALL::QSAR::PLSModel
• optimizeStructure() : BALL::VIEW::Scene
• Options() : BALL::Options
• other() : BALL::GraphEdge< Vertex, Edge, Face >
• out_() : BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• outfinish_() : BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• outheader_() : BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• OutOfGrid() : BALL::Exception::OutOfGrid
• OutOfMemory() : BALL::Exception::OutOfMemory
• OutOfRange() : BALL::Exception::OutOfRange
• output_() : BALL::VIEW::BALLThread
• outputEnabled() : BALL::LogStream
• overflow() : BALL::LogStreamBuf
• OverviewProcessor() : BALL::VIEW::AtomOverview::OverviewProcessor