BALL: Class Members

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RadialDistributionFunction() : BALL::RadialDistributionFunction
RadiusRuleProcessor() : BALL::RadiusRuleProcessor
RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
randomDouble() : BALL::RandomNumberGenerator
randomGaussian() : BALL::RandomNumberGenerator
randomInteger() : BALL::RandomNumberGenerator
randomUniform() : BALL::RandomNumberGenerator
rbegin() : BALL::Gradient , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits >
rbeginBond() : BALL::Atom
rdbuf() : BALL::LogStream
RDFIntegrator() : BALL::RDFIntegrator
RDFParameter() : BALL::RDFParameter
RDFSection() : BALL::RDFSection
reactToMessages_() : BALL::VIEW::MolecularControl
read() : BALL::BitVector , BALL::TVector3< T > , BALL::BitVector , BALL::Options , BALL::Bruker1DFile , BALL::Bruker2DFile , BALL::DCDFile , BALL::DSN6File , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile , BALL::MOL2File , BALL::MOLFile , BALL::PropertyManager , BALL::PDBFile , BALL::Selectable , BALL::SDFile , BALL::PreciseTime , BALL::TrajectoryFile , BALL::TRRFile , BALL::TimeStamp , BALL::XYZFile
readAtomLine_() : BALL::MOLFile
readAtomPenalties_() : BALL::AssignBondOrderProcessor
readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
readBondLengthsFromFile_() : BALL::BuildBondsProcessor
readBondLine_() : BALL::MOLFile
readCountsLine_() : BALL::MOLFile
readCTAB_() : BALL::MOLFile
readDockResult() : BALL::DockResult
readEmpiricalParameters() : BALL::MMFF94StretchBendParameters
readFiles() : BALL::VIEW::MolecularFileDialog
readFirstRecord() : BALL::PDBFile
readFromFile() : BALL::SnapShotManager
readHeader() : BALL::DCDFile , BALL::DSN6File , BALL::TrajectoryFile
readHINFile() : BALL::VIEW::MolecularFileDialog
readInputFromSocket_() : BALL::TCPTransfer
readInvalidRecord() : BALL::PDBFile
readLine() : BALL::LineBasedFile , BALL::PDBFile
readMOL2File() : BALL::VIEW::MolecularFileDialog
readMOLFile() : BALL::VIEW::MolecularFileDialog
readMSMSFile() : BALL::TSurface< T >
readNextHeader() : BALL::TRRFile
readNextRecord() : BALL::PDBFile
readObject() : BALL::PersistenceManager
readObjectArray() : BALL::PersistenceManager
readObjectPointer() : BALL::PersistenceManager
readObjectPointerArray() : BALL::PersistenceManager
readObjectReference() : BALL::PersistenceManager
readOptionFile() : BALL::Options
readOptions_() : BALL::AssignBondOrderProcessor
readPDBFile() : BALL::VIEW::MolecularFileDialog
readPreferenceEntries() : BALL::VIEW::MainControlPreferences , BALL::VIEW::PluginDialog , BALL::VIEW::PythonSettings , BALL::VIEW::PreferencesEntry
readPrimitive() : BALL::PersistenceManager
readPropertyBlock_() : BALL::SDFile
readRecords() : BALL::PDBFile
readSDFile() : BALL::VIEW::MolecularFileDialog
readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
readStorableObject() : BALL::PersistenceManager
readUnknownRecord() : BALL::PDBFile
readXYZFile() : BALL::VIEW::MolecularFileDialog
receivesBufferUpdates() : BALL::VIEW::RenderSetup
Reciprocal() : BALL::Reciprocal< Function, DataType >
ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
RecStruct_() : BALL::SmartsMatcher::SmartsMatcher::RecStruct_
RecStructCore_() : BALL::SmartsMatcher::SmartsMatcher::RecStructCore_
RecStructPool_() : BALL::SmartsMatcher::SmartsMatcher::RecStructPool_
recurseGeneration_() : BALL::VIEW::MolecularControl
redock_() : BALL::VIEW::DockResultDialog
redrawAllRepresentations() : BALL::VIEW::MainControl
ReducedSurface() : BALL::ReducedSurface
reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
refine() : BALL::TriangulatedSphere
refresh() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderWindow< taPixelDatatype >
registerClass() : BALL::PersistenceManager
registerConnectionObject() : BALL::VIEW::ConnectionObject
registerController() : BALL::VIEW::DatasetControl
registerForHelpSystem() : BALL::VIEW::ModularWidget , BALL::VIEW::DockWidget , BALL::VIEW::HelpViewer
registerHandler() : BALL::PluginManager
registerModule() : BALL::ShiftModel
registerObjectCreator() : BALL::VIEW::ServerWidget
registerPredicate() : BALL::Expression
registerSmartPointer() : BALL::PersistenceManager
registerThis() : BALL::Embeddable
registerTransformation() : BALL::TransformationManager
registerWidget() : BALL::VIEW::ModularWidget
registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
registerWidgets_() : BALL::VIEW::PreferencesEntry
RegularData1DWidget() : BALL::VIEW::RegularData1DWidget
RegularExpression() : BALL::RegularExpression
ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
reject() : BALL::VIEW::GeometricFitDialog
RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
RelNegativePartialCharge() : BALL::RelNegativePartialCharge
RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
RelPolarVdWSurface() : BALL::RelPolarVdWSurface
RelPositivePartialCharge() : BALL::RelPositivePartialCharge
RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
remove() : BALL::LogStream , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::List< Value > , BALL::StringHashMap< Value > , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSFace , BALL::Triangle , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::VIEW::CompositeManager , BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager
removeAll() : BALL::HashGridBox3< Item >
removeChild() : BALL::Composite , BALL::ResourceEntry
removeComponent() : BALL::ComposedEnergyProcessor , BALL::ForceField
removeComposite() : BALL::VIEW::MolecularControl
removedComposite() : BALL::VIEW::RepresentationManager
removeEntry() : BALL::VIEW::Preferences
removeGridTextures() : BALL::VIEW::RenderSetup
removeLightPressed() : BALL::VIEW::LightSettings
removeLightSource() : BALL::VIEW::Stage
removeModularWidget() : BALL::VIEW::MainControl
removePluginDirectory() : BALL::PluginManager
removeRepresentation() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer , BALL::VIEW::GeometricControl
removeSelected() : BALL::Composite
removeSolvent() : BALL::PeriodicBoundary
removeUnselected() : BALL::Composite
rename() : BALL::File , BALL::Directory
renameTo() : BALL::Directory , BALL::File
rend() : BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::Gradient
rendBond() : BALL::Atom
render_() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
renderBox_() : BALL::VIEW::Renderer , BALL::VIEW::GLRenderer
renderDisc_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
Renderer() : BALL::VIEW::Renderer
renderGridVisualisation_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderLine_() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::GLRenderer
renderMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
renderMultiLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
renderOneRepresentation() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
renderPoint_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
renderQuadMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
renderRuler() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
renderSimpleBox_() : BALL::VIEW::Renderer , BALL::VIEW::GLRenderer
renderSphere_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::Renderer
renderToBuffer() : BALL::VIEW::BufferedRenderer , BALL::VIEW::RenderSetup , BALL::VIEW::GLRenderer
renderToBufferImpl() : BALL::VIEW::BufferedRenderer
renderTube_() : BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::POVRenderer
renderTwoColoredLine_() : BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::VRMLRenderer
renderTwoColoredTube_() : BALL::VIEW::POVRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer
reopen() : BALL::File
replace() : BALL::Composite
Representation() : BALL::VIEW::Representation
RepresentationManager() : BALL::VIEW::RepresentationManager
rescale() : BALL::TRegularData1D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TRegularData2D< ValueType >
reset() : BALL::Timer , BALL::Path , BALL::VIEW::GeometricFitDialog , BALL::VIEW::DockDialog
resetBondOrders() : BALL::AssignBondOrderProcessor
resetCamera_() : BALL::VIEW::Scene
resetCounter() : BALL::TContour< T > , BALL::TContourLine< T >
resetPositions() : BALL::AtomVector
resetPressed() : BALL::VIEW::DockDialog
resetRepresentationsForRenderer_() : BALL::VIEW::Scene
resetScoring() : BALL::ConformationSet
Residue() : BALL::Residue
ResidueChecker() : BALL::ResidueChecker
ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
ResidueRotamerSet() : BALL::ResidueRotamerSet
ResidueTorsions() : BALL::ResidueTorsions
resize() : BALL::TRegularData1D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::GLRenderWindow , BALL::VIEW::FrameBufferFormat , BALL::VIEW::RenderWindow< taPixelDatatype > , BALL::AtomVector , BALL::VIEW::MainControl , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::RenderSetup , BALL::TRegularData2D< ValueType >
resized() : BALL::VIEW::FrameBufferFormat
resizeEvent() : BALL::VIEW::Scene
resizeNormals() : BALL::TSurface< T >
resizeTriangles() : BALL::TSurface< T >
resizeVertices() : BALL::TSurface< T >
ResourceEntry() : BALL::ResourceEntry
ResourceFile() : BALL::ResourceFile
restoreDefaultValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
restoreValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
restoreWindows() : BALL::VIEW::MainControl
retrieveHistoryLine_() : BALL::VIEW::PyWidget
reverse() : BALL::String
rewind() : BALL::LineBasedFile
right() : BALL::String
RingAnalyser() : BALL::RingAnalyser
RingClusterer() : BALL::RingClusterer
RingFinder() : BALL::RingFinder
RingPerceptionProcessor() : BALL::RingPerceptionProcessor
RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
Rotamer() : BALL::Rotamer
RotamerLibrary() : BALL::RotamerLibrary
rotate() : BALL::TMatrix4x4< T > , BALL::VIEW::Camera
rotateComposites() : BALL::VIEW::Scene
rotateMode_() : BALL::VIEW::Scene
rotateX() : BALL::TMatrix4x4< T >
rotateY() : BALL::TMatrix4x4< T >
rotateZ() : BALL::TMatrix4x4< T >
RotationalEntropyLoss() : BALL::RotationalEntropyLoss
RSComputer() : BALL::RSComputer
RSConstructor() : BALL::RSConstructor
RSEdge() : BALL::RSEdge
RSFace() : BALL::RSFace
RSVertex() : BALL::RSVertex
RuleEvaluator() : BALL::RuleEvaluator
RuleProcessor() : BALL::RuleProcessor
run() : BALL::VIEW::DockingThread , BALL::PyInterpreter , BALL::VIEW::EnergyMinimizerThread , BALL::VIEW::FetchHTMLThread , BALL::VIEW::BALLThread , BALL::SESComputer , BALL::RSComputer , BALL::SESSingularityCleaner , BALL::VIEW::MDSimulationThread
runBondOrderAssignment() : BALL::VIEW::MolecularStructure
runDocking() : BALL::VIEW::DockingController
runFile() : BALL::PyInterpreter
runMinimization() : BALL::VIEW::MolecularStructure
runScoring_() : BALL::VIEW::DockingController