BALL: Class Members

- c -

c_str() : BALL::Substring
calculate() : BALL::VIEW::FDPBDialog
calculateAbsoluteCoordinates() : BALL::VIEW::Stage
calculateBendEmpiricalForceConstant() : BALL::MMFF94StretchBend
calculateBendEmpiricalReferenceAngle() : BALL::MMFF94StretchBend
calculateDefaultBijection() : BALL::StructureMapper
calculateDistances() : BALL::VIEW::AtomDistanceColorProcessor
calculateEnergy() : BALL::GeneralizedBornModel
calculateFactors_() : BALL::CanonicalMD
calculateForceFieldEnergy() : BALL::VIEW::MolecularStructure
calculateFragmentBijection() : BALL::StructureMapper
calculateHBonds() : BALL::VIEW::MolecularStructure
calculateMinSpacing() : BALL::HashGrid3< Item >
calculatePEOE() : BALL::PartialChargeProcessor
calculatePotential() : BALL::GeneralizedBornModel
calculateRamachandranPlot() : BALL::VIEW::MolecularStructure
calculateReactionFieldEnergy() : BALL::FDPB
calculateRelativeCoordinates() : BALL::VIEW::Stage
calculateRMSD() : BALL::AtomBijection , BALL::StructureMapper , BALL::VIEW::MolecularStructure
calculateScore() : BALL::BuriedPolar , BALL::Lipophilic , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss
calculateSecondaryStructure() : BALL::VIEW::MolecularStructure
calculateSolvationEnergy() : BALL::GeneralizedBornModel
calculateSSSR() : BALL::RingPerceptionProcessor
calculateStretchR0() : BALL::MMFF94StretchBend
calculateTransformation() : BALL::StructureMapper
Camera() : BALL::VIEW::Camera
cancelPressed() : BALL::VIEW::DockDialog
canHandle() : BALL::PluginHandler , BALL::VIEW::MolecularFileDialog , BALL::VIEW::ModularWidget , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::DatasetControl , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
CanonicalMD() : BALL::CanonicalMD
canonizePath() : BALL::FileSystem
centerCamera() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
Chain() : BALL::Chain
ChainBuilder() : BALL::ChainBuilder
changeLock() : BALL::VIEW::ServerWidget
changeToUserHomeDir() : BALL::Directory
ChargeRuleProcessor() : BALL::ChargeRuleProcessor
CharmmBend() : BALL::CharmmBend
CharmmConfigurationDialog() : BALL::VIEW::CharmmConfigurationDialog
CharmmEEF1() : BALL::CharmmEEF1
CharmmFF() : BALL::CharmmFF
CharmmImproperTorsion() : BALL::CharmmImproperTorsion
CharmmNonBonded() : BALL::CharmmNonBonded
CharmmStretch() : BALL::CharmmStretch
CharmmTorsion() : BALL::CharmmTorsion
checkAtomType() : BALL::MMFF94
checkHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkMenu() : BALL::VIEW::DatasetController , BALL::VIEW::DisplayProperties , BALL::VIEW::DownloadPDBFile , BALL::VIEW::LabelDialog , BALL::VIEW::MolecularFileDialog , BALL::VIEW::PubChemDialog , BALL::VIEW::ModularWidget , BALL::VIEW::DatasetControl , BALL::VIEW::DockingController , BALL::VIEW::EditableScene , BALL::VIEW::FileObserver , BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::VIEW::TestFramework
checkMenus() : BALL::VIEW::MainControl
checkName() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectHeader() : BALL::PersistenceManager
checkObjectPointerArrayHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectPointerArrayTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectPointerHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectReferenceHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkObjectTrailer() : BALL::PersistenceManager
checkPrimitiveHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkPrimitiveTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkResidue() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
checkStorableHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStorableTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStreamHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkStreamTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
checkTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
ChemScoreMetal() : BALL::ChemScoreMetal
chooseAmberFF() : BALL::VIEW::MolecularStructure
chooseCharmmFF() : BALL::VIEW::MolecularStructure
chooseFile() : BALL::VIEW::FileObserver
chooseMMFF94() : BALL::VIEW::MolecularStructure
ClaverieParameter() : BALL::ClaverieParameter
clean() : BALL::ReducedSurface
clear() : BALL::MMFF94ESParameters , BALL::AtomTypes , BALL::CharmmEEF1 , BALL::CosineTorsion , BALL::ForceFieldParameters , BALL::LennardJones , BALL::Potential1210 , BALL::QuadraticAngleBend , BALL::QuadraticBondStretch , BALL::QuadraticImproperTorsion , BALL::ResidueTorsions , BALL::Templates , BALL::ShiftModel , BALL::ShiftModule , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::BuriedPolar , BALL::CHPI , BALL::HydrogenBond , BALL::Lipophilic , BALL::ChemScoreMetal , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::SLICKEnergy , BALL::SLICKScore , BALL::ClaverieParameter , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::PCMCavFreeEnergyProcessor , BALL::PierottiCavFreeEnergyProcessor , BALL::ReissCavFreeEnergyProcessor , BALL::SolventDescriptor , BALL::SolventParameter , BALL::UhligCavFreeEnergyProcessor , BALL::AssignBondOrderProcessor , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFParameter , BALL::RDFSection , BALL::ReducedSurface , BALL::RotamerLibrary , BALL::SmartsMatcher::SmartsMatcher::RecStructCore_ , BALL::SmartsMatcher::SmartsMatcher::RecStruct_ , BALL::SmartsParser , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::TCPTransfer , BALL::Timer , BALL::VIEW::ColorExtension2 , BALL::VIEW::MultiColorExtension , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::LogStream , BALL::VIEW::ColorUnitHue , BALL::VIEW::Dataset , BALL::Client , BALL::VIEW::Vertex , BALL::VIEW::Vertex2 , BALL::Composite , BALL::VIEW::CompositeManager , BALL::VIEW::ConnectionObject , BALL::MolecularInformation , BALL::VIEW::GeometricObject , BALL::VIEW::MainControl , BALL::MoleculeObjectCreator , BALL::VIEW::ModularWidget , BALL::VIEW::Representation , BALL::Object , BALL::VIEW::RepresentationManager , BALL::VIEW::ServerWidget , BALL::ObjectCreator , BALL::VIEW::Camera , BALL::VIEW::Stage , BALL::NamedProperty , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddBackboneModel , BALL::PropertyManager , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::VRMLRenderer , BALL::VIEW::MeshBuffer , BALL::VIEW::STLRenderer , BALL::VIEW::ColorProcessor , BALL::VIEW::POVRenderer , BALL::VIEW::GLRenderer , BALL::Selectable , BALL::VIEW::HBondModelProcessor , BALL::VIEW::TwoColoredLine , BALL::VIEW::Tube , BALL::VIEW::Sphere , BALL::VIEW::ModelProcessor , BALL::VIEW::Point , BALL::VIEW::MultiLine , BALL::PreciseTime , BALL::VIEW::AddSurfaceModel , BALL::VIEW::Box , BALL::TimeStamp , BALL::VIEW::Disc , BALL::VIEW::Label , BALL::Bit , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::BitVector , BALL::TContour< T > , BALL::VIEW::SimpleBox , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::VIEW::TwoColoredTube , BALL::VIEW::GLDisplayList , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::VIEW::Renderer , BALL::HashGrid3< Item > , BALL::VIEW::GeometricControl , BALL::VIEW::PyWidget , BALL::HashSet< Key > , BALL::VIEW::Scene , BALL::Options , BALL::Quadruple< T1, T2, T3, T4 > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::RegularExpression , BALL::String , BALL::Substring , BALL::Triple< T1, T2, T3 > , BALL::ComposedEnergyProcessor , BALL::EnergyProcessor , BALL::DCDFile , BALL::DSN6File , BALL::INIFile , BALL::LineBasedFile , BALL::NMRStarFile , BALL::Parameters , BALL::ParameterSection , BALL::PDBFile , BALL::PDBInfo , BALL::ResourceFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Expression , BALL::ExpressionParser::ExpressionParser::SyntaxTree , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Element , BALL::PTE_ , BALL::Residue , BALL::SecondaryStructure , BALL::Selector , BALL::ConnectedToPredicate , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::RombergIntegrator< Function, DataType > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TVector2< T > , BALL::MMFF94VDWParameters , BALL::TVector3< T > , BALL::TVector4< T > , BALL::AmberFF , BALL::MMFF94BendParameters , BALL::AmberNonBonded , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::MMFF94NonBonded , BALL::ForceField , BALL::PeriodicBoundary , BALL::RuleEvaluator , BALL::SnapShot , BALL::SnapShotManager , BALL::MMFF94 , BALL::MMFF94ParametersBase , BALL::MMFF94AtomTypeEquivalences , BALL::MMFF94StretchParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters
clearBuffer() : BALL::SnapShotManager , BALL::VIEW::MeshBuffer
clearClipboard() : BALL::VIEW::MolecularControl
clearComposites() : BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::ModelProcessor , BALL::VIEW::AddSurfaceModel
clearData() : BALL::VIEW::MainControl
clearGeometricObjects() : BALL::VIEW::Representation
clearKeySequences() : BALL::VIEW::ShortcutRegistry
clearNormals() : BALL::TSurface< T >
clearProperty() : BALL::PropertyManager
clearSelection() : BALL::VIEW::MainControl
clearSelector() : BALL::VIEW::MolecularControl
ClearShiftProcessor() : BALL::ClearShiftProcessor
clearTriangles() : BALL::TSurface< T >
clearUsedAtoms_() : BALL::VIEW::AtomBondModelBaseProcessor
clearVertices() : BALL::TSurface< T >
Client() : BALL::Client
ClippingDialog() : BALL::VIEW::ClippingDialog
clone() : BALL::Composite
cloneBond() : BALL::Atom
close() : BALL::ResourceFile , BALL::File
closeClicked() : BALL::VIEW::DockResultDialog
clusterRings() : BALL::RingClusterer
collapseAll() : BALL::VIEW::MolecularControl
ColorExtension2() : BALL::VIEW::ColorExtension2
ColorHSV() : BALL::VIEW::ColorHSV
coloringMuteableByDisplayProperties() : BALL::VIEW::ModelInformation
ColoringSettingsDialog() : BALL::VIEW::ColoringSettingsDialog
ColorMap() : BALL::VIEW::ColorMap
colorPressed() : BALL::VIEW::LightSettings , BALL::VIEW::StageSettings
ColorProcessor() : BALL::VIEW::ColorProcessor
ColorRGBA() : BALL::VIEW::ColorRGBA
ColorUnit() : BALL::VIEW::ColorUnit
ColorUnitHue() : BALL::VIEW::ColorUnitHue
compact() : BALL::Atom
Comparator() : BALL::Comparator< T >
compare() : BALL::Object
Compare_() : BALL::DockResult::DockResult::Compare_ , BALL::VIEW::DockResultDialog::DockResultDialog::Compare_
compareChains() : BALL::ChainBuilder
compareRingsystems() : BALL::MoleculeAssembler
ComposedEnergyProcessor() : BALL::ComposedEnergyProcessor
Composite() : BALL::Composite
CompositeIteratorTraits() : BALL::CompositeIteratorTraits
CompositeManager() : BALL::VIEW::CompositeManager
CompositeMessage() : BALL::VIEW::CompositeMessage
compositeProperties() : BALL::VIEW::MolecularControl
compositesAreLocked() : BALL::VIEW::MainControl
compute() : BALL::RelNumberOfRotatableSingleBonds , BALL::TriangulatedSAS , BALL::SolventAccessibleSurface , BALL::ReducedSurface , BALL::SolventExcludedSurface
compute_() : BALL::SecondaryStructureProcessor
computeNextSolution() : BALL::AssignBondOrderProcessor
computeSize() : BALL::VIEW::FrameBufferFormat
computeTopology() : BALL::TContourSurface< T >::TContourSurface::Cube
computeVirtualHydrogens_() : BALL::AssignBondOrderProcessor
ConjugateGradientMinimizer() : BALL::ConjugateGradientMinimizer
connect() : BALL::Client
ConnectionObject() : BALL::VIEW::ConnectionObject
ConnectivityBase() : BALL::ConnectivityBase
ConstBidirectionalIterator() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
ConstForwardIterator() : BALL::ConstForwardIterator< Container, DataType, Position, Traits >
construct() : BALL::Peptides::PeptideBuilder
constructRS() : BALL::RSConstructor
containsSelection() : BALL::Composite
convertObject() : BALL::MoleculeObjectCreator , BALL::ObjectCreator
coordinateSystemEnabled() : BALL::VIEW::Stage
copy() : BALL::VIEW::MolecularControl , BALL::File
copyTo() : BALL::File
CosineTorsion() : BALL::CosineTorsion
count() : BALL::Composite
countAtomContainers() : BALL::AtomContainer
countAtoms() : BALL::AtomContainer , BALL::System
countBonds() : BALL::Atom , BALL::AtomContainer
countChains() : BALL::Protein , BALL::System
countChildren() : BALL::ResourceEntry
countComponents() : BALL::ForceField
countDescendants() : BALL::Composite , BALL::ResourceEntry
countDirectories() : BALL::Directory
countEdges() : BALL::SmartsParser::SmartsParser::SPNode
countFields() : BALL::String
countFieldsQuoted() : BALL::String
countFiles() : BALL::Directory
countFragments() : BALL::System
countInstances_() : BALL::Embeddable
countInterBonds() : BALL::AtomContainer
countIntraBonds() : BALL::AtomContainer
countItems() : BALL::Directory , BALL::VIEW::MolecularControl
countMolecules() : BALL::System
countNamedProperties() : BALL::PropertyManager
countNonEmptyBoxes() : BALL::HashGrid3< Item >
countNucleicAcids() : BALL::System
countNucleotides() : BALL::System , BALL::NucleicAcid
countPDBAtoms() : BALL::Protein , BALL::SecondaryStructure , BALL::Chain , BALL::Residue
countProperties() : BALL::SmartsParser::SmartsParser::SPAtom , BALL::PropertyManager
countProteins() : BALL::System
countRealValences() : BALL::SmartsParser::SmartsParser::SPAtom
countRecord() : BALL::PDBFile
countRecordFields() : BALL::PDBFile
countRecords() : BALL::PDBFile
countResidues() : BALL::System , BALL::SecondaryStructure , BALL::Protein , BALL::Chain
countSecondaryStructures() : BALL::Protein , BALL::Chain , BALL::System
countSubexpressions() : BALL::RegularExpression
countValue() : BALL::BitVector
countVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
create() : BALL::Directory , BALL::Factory< T >
createAtom() : BALL::SmartsParser
createBond() : BALL::Bond , BALL::Atom
createCombination() : BALL::Enumerator< Container, SiteIterator, Variant >
createContourLine() : BALL::TContourLine< T >
createCoordinateSystem() : BALL::VIEW::Scene
createCoordinateSystemAtOrigin() : BALL::VIEW::Scene
createDisk() : BALL::TriangulatedSurface
createFPSInfo_() : BALL::VIEW::Scene
createGeometricObjects() : BALL::VIEW::LabelModel , BALL::VIEW::ModelProcessor , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddSurfaceModel
createGridFromDistance() : BALL::VIEW::MolecularStructure
createMap() : BALL::VIEW::ColorMap
createMapJet() : BALL::VIEW::ColorMap
createMenuEntries() : BALL::VIEW::DockResultController , BALL::VIEW::VectorGridController , BALL::VIEW::TrajectoryController , BALL::VIEW::RegularData3DController , BALL::VIEW::DatasetController , BALL::VIEW::RaytraceableGridController
createObject() : BALL::PersistenceManager
createPlot() : BALL::VIEW::RegularData1DWidget , BALL::VIEW::RegularData2DWidget
createRepresentation() : BALL::VIEW::MolecularControl , BALL::VIEW::RepresentationManager
createRepresentationMode() : BALL::VIEW::DisplayProperties
createResidue_() : BALL::Peptides::PeptideBuilder
CreateSpectrumProcessor() : BALL::CreateSpectrumProcessor
createTemporaryFilename() : BALL::File
createTube() : BALL::TriangulatedSurface
createVoid() : BALL::Factory< T >
CubicFunction() : BALL::CubicFunction< Function, DataType >
currentStackPage() : BALL::VIEW::PreferencesEntry
customEvent() : BALL::VIEW::Scene
cut() : BALL::TriangulatedSurface , BALL::VIEW::MolecularControl