- GAMESSDatFile() :
BALL::GAMESSDatFile
- GAMESSLogFile() :
BALL::GAMESSLogFile
- GeneralException() :
BALL::Exception::GeneralException
- generateButtonClicked() :
BALL::VIEW::PubChemDialog
- generateFromSMILES() :
BALL::VIEW::PubChemDialog
- generateListViewItem_() :
BALL::VIEW::GeometricControl ,
BALL::VIEW::MolecularControl
- generateMoleculesVector() :
BALL::PeriodicBoundary
- generateSD() :
BALL::SDGenerator
- GenericControl() :
BALL::VIEW::GenericControl
- GenericMolFile() :
BALL::GenericMolFile
- GenericSelectionMessage() :
BALL::VIEW::GenericSelectionMessage
- GeometricControl() :
BALL::VIEW::GeometricControl
- GeometricFit() :
BALL::GeometricFit
- GeometricFitDialog() :
BALL::VIEW::GeometricFitDialog
- GeometricObject() :
BALL::VIEW::GeometricObject
- GeometricObjectSelectionMessage() :
BALL::VIEW::GeometricObjectSelectionMessage
- get() :
BALL::PersistenceManager , BALL::Options
,
BALL::VIEW::ColorUnitHue ,
BALL::RegularExpression ,
BALL::VIEW::ColorUnitHue ,
BALL::PersistenceManager , BALL::String
,
BALL::VIEW::ColorUnitHue ,
BALL::StringHashMap< Value > ,
BALL::VIEW::ColorUnitHue ,
BALL::PersistenceManager ,
BALL::ResourceEntry ,
BALL::VIEW::ColorUnitHue , BALL::Atom
,
BALL::VIEW::ColorUnitHue ,
BALL::PersistenceManager ,
BALL::AtomContainer , BALL::Chain
,
BALL::PersistenceManager ,
BALL::Molecule ,
BALL::NucleicAcid ,
BALL::PersistenceManager ,
BALL::Nucleotide , BALL::PDBAtom
,
BALL::PersistenceManager , BALL::Protein
, BALL::Residue
,
BALL::PersistenceManager ,
BALL::SecondaryStructure , BALL::System
,
BALL::PersistenceManager , BALL::TAngle<
T > ,
BALL::PropertyManager ,
BALL::TCircle3< T > ,
BALL::Selectable , BALL::TLine3<
T > ,
BALL::TextPersistenceManager ,
BALL::TMatrix4x4< T > ,
BALL::TextPersistenceManager ,
BALL::TMatrix4x4< T > ,
BALL::TextPersistenceManager ,
BALL::TMatrix4x4< T > , BALL::TPlane3<
T > ,
BALL::TextPersistenceManager , BALL::TPlane3<
T > ,
BALL::TQuaternion< T > ,
BALL::TextPersistenceManager ,
BALL::TSimpleBox3< T > ,
BALL::TextPersistenceManager ,
BALL::TSimpleBox3< T > ,
BALL::TSphere3< T > ,
BALL::TextPersistenceManager ,
BALL::TSphere3< T > ,
BALL::TVector3< T > ,
BALL::TextPersistenceManager ,
BALL::TVector3< T > ,
BALL::TextPersistenceManager ,
BALL::TVector3< T > , BALL::TVector4<
T > ,
BALL::XDRPersistenceManager , BALL::TVector4<
T > ,
BALL::XDRPersistenceManager ,
BALL::Directory ,
BALL::VIEW::ColorHSV ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorHSV ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorHSV ,
BALL::VIEW::ColorRGBA ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorRGBA ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorRGBA ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorRGBA ,
BALL::VIEW::ColorUnit ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorUnit ,
BALL::XDRPersistenceManager ,
BALL::VIEW::ColorUnit ,
BALL::BitVector ,
BALL::VIEW::ColorUnit ,
BALL::Composite , BALL::HashSet<
Key > ,
BALL::VIEW::ColorUnit , BALL::List<
Value > ,
BALL::VIEW::ColorUnit
- get3Prime() :
BALL::NucleicAcid
- get5Prime() :
BALL::NucleicAcid
- getActiveSitePoints() :
BALL::BindingPocketProcessor
- getAlgorithmOptions() :
BALL::VIEW::DockDialog
- getAllSmallRings() :
BALL::RingPerceptionProcessor
- getAlpha() :
BALL::LineSearch ,
BALL::VIEW::ColorRGBA
- getAlphaBlending() :
BALL::VIEW::ColorMap
- getAlternateLocationIndicator() : BALL::PDBAtom
- getAmberConfigurationDialog() :
BALL::VIEW::MolecularStructure
- getAmberFF() :
BALL::VIEW::MolecularStructure
- getAncestor() :
BALL::Composite
- getAngle() :
BALL::TQuaternion< T > ,
BALL::TVector3< T > ,
BALL::ReducedSurface , BALL::RSEdge
, BALL::SASEdge
,
BALL::VIEW::LightSource
- getArea() :
BALL::TSurface< T >
- getArgument() :
BALL::ExpressionPredicate
- getAtom() :
BALL::AtomContainer , BALL::Peak<
PositionType > ,
BALL::RSVertex ,
BALL::SESVertex
- getAtomBranchDesignator() : BALL::PDBFile
- getAtomContainer() :
BALL::AtomContainer ,
BALL::AssignBondOrderProcessor
- getAtomDescriptor() :
BALL::SolventDescriptor
- getAtomElementSymbol() : BALL::PDBFile
- getAtomForces() :
BALL::SnapShot
- getAtomicNumber() : BALL::Element
- getAtomicRadius() : BALL::Element
- getAtomicWeight() : BALL::Element
- getAtomList_() :
BALL::VIEW::AtomBondModelBaseProcessor
- getAtomName() : BALL::PDBFile
- getAtomPositions() :
BALL::SnapShot
- getAtomRemotenessIndicator() : BALL::PDBFile
- getAtoms() :
BALL::ForceField
- getAtomSet_() :
BALL::VIEW::AtomBondModelBaseProcessor
- getAtomTypes() :
BALL::ForceFieldParameters
- getAtomVelocities() :
BALL::SnapShot
- getAttenuation() :
BALL::VIEW::LightSource
- getAttributes() : BALL::Atom
- getAttributesModificationTime() : BALL::Atom
- getAvailableNamingStandards() :
BALL::FragmentDB
- getAxis() :
BALL::TQuaternion< T >
- getBackgroundColor() :
BALL::VIEW::Stage
- getBallRadius() :
BALL::VIEW::AddBallAndStickModel
- getBathRelaxationTime() :
BALL::CanonicalMD
- getBendEnergy() : BALL::AmberFF
,
BALL::CharmmFF , BALL::MMFF94
- getBeta() :
BALL::LineSearch
- getBijection() :
BALL::StructureMapper
- getBit() :
BALL::BitVector
- getBitSet() :
BALL::BitVector
- getBitVector() :
BALL::PropertyManager
- getBlue() :
BALL::VIEW::ColorRGBA
- getBond() : BALL::Atom
- getBondMap() :
BALL::BuildBondsProcessor
- getBondOrder() :
BALL::SmartsParser::SmartsParser::SPBond
- getBool() :
BALL::NamedProperty , BALL::Options
- getBorder() :
BALL::TriangulatedSurface
- getBoundAtom() : BALL::Bond
- getBoundingBox() :
BALL::ReducedSurface
- getBoundString() :
BALL::Substring
- getBox() :
BALL::HashGrid3< Item > ,
BALL::PeriodicBoundary ,
BALL::BoundingBoxProcessor
- getBranchDesignator() : BALL::PDBAtom
- getBucketSize() : BALL::HashSet<
Key >
- getBuffer() :
BALL::TCPTransfer
- getCamera() :
BALL::VIEW::Stage
- getCapacity() : BALL::HashSet<
Key >
- getCenter() :
BALL::GeometricCenterProcessor , BALL::RSFace
- getCenterOfTorus() : BALL::RSEdge
- getChain() : BALL::Atom
, BALL::PDBAtom
, BALL::Protein
, BALL::Residue
,
BALL::SecondaryStructure
- getChainName() :
BALL::Peptides::PeptideBuilder
- getCharge() : BALL::Atom
,
BALL::Templates
- getCharmmConfigurationDialog() :
BALL::VIEW::MolecularStructure
- getCharmmFF() :
BALL::VIEW::MolecularStructure
- getChild() :
BALL::Composite ,
BALL::ResourceEntry
- getChildren() :
BALL::ExpressionTree
- getCircle() : BALL::SASEdge
, BALL::SESEdge
- getClockTime() : BALL::Timer
- getClosestIndex() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getClosestItem() :
BALL::HashGrid3< Item >
- getClosestValue() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getCoefficients() :
BALL::PiecewiseFunction
- getColor() :
BALL::VIEW::LightSource ,
BALL::VIEW::ColorProcessor ,
BALL::VIEW::ElementColorProcessor ,
BALL::VIEW::ResidueNumberColorProcessor ,
BALL::VIEW::ResidueNameColorProcessor ,
BALL::VIEW::AtomChargeColorProcessor ,
BALL::VIEW::AtomDistanceColorProcessor ,
BALL::VIEW::TemperatureFactorColorProcessor ,
BALL::VIEW::OccupancyColorProcessor ,
BALL::VIEW::ForceColorProcessor ,
BALL::VIEW::SecondaryStructureColorProcessor ,
BALL::VIEW::ResidueTypeColorProcessor
- getColor2() :
BALL::VIEW::ColorExtension2
- getColoringName() :
BALL::VIEW::ModelInformation
- getColors() :
BALL::VIEW::MultiColorExtension ,
BALL::VIEW::GeometricObject
- getColumn() :
BALL::TMatrix4x4< T >
- getColumnIndex() :
BALL::ParameterSection
- getComent() : BALL::XYZFile
- getCompareMode() : BALL::String
- getComponent() :
BALL::ForceField
- getComponentNumber() :
BALL::SmartsParser::SmartsParser::SPNode
- getComposite() :
BALL::FragmentDistanceCollector ,
BALL::VIEW::CompositeMessage
- getCompositeManager() :
BALL::VIEW::MainControl
- getCompositeName() :
BALL::VIEW::CompositeMessage ,
BALL::VIEW::Representation
- getComposites() :
BALL::VIEW::ColorProcessor
- getConformationSet() :
BALL::DockingAlgorithm ,
BALL::DockResult ,
BALL::GeometricFit
- getConjugate() :
BALL::TQuaternion< T >
- getConstant() :
BALL::MutableConstant< DataType >
- getConstants() :
BALL::Pair6_12RDFIntegrator ,
BALL::PairExpRDFIntegrator
- getContactCircle() : BALL::RSEdge
- getContainer() :
BALL::BaseIterator< Container, DataType, Position, Traits
> ,
BALL::CompositeIteratorTraits
- getController() :
BALL::VIEW::DatasetControl
- getCoordinates() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getCorrectionParameter() :
BALL::ShiftedLVMMMinimizer
- getCovalentRadius() : BALL::Element
- getCPUTime() : BALL::Timer
- getCreationMethods() :
BALL::Expression
- getCTerminal() : BALL::Chain
, BALL::Protein
,
BALL::SecondaryStructure
- getCurentModel() : BALL::PDBInfo
- getCurrent() :
BALL::Enumerator< Container, SiteIterator, Variant
>
- getCurrentModel() : BALL::PDBFile
, BALL::PDBInfo
- getData() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType > ,
BALL::Bruker1DFile ,
BALL::Bruker2DFile ,
BALL::NMRStarFile ,
BALL::CompositeIteratorTraits , BALL::TFFT1D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits > ,
BALL::BinaryFileAdaptor< T >
- getDataPath() : BALL::Path
- getDataset() :
BALL::VIEW::DatasetController
- getDatasets() :
BALL::VIEW::DatasetController ,
BALL::VIEW::DatasetControl
- getDefault() : BALL::Factory<
T >
- getDefaultColor() :
BALL::VIEW::ColorProcessor
- getDefaultDataPath() : BALL::Path
- getDefaultNamingStandard() :
BALL::FragmentDB
- getDefaultPeak() :
BALL::Experiment< PeakListType >
- getDefaultValence() :
BALL::SmartsParser::SmartsParser::SPAtom
- getDegree() :
BALL::Composite ,
BALL::PiecewisePolynomial
- getDensity() :
BALL::TriangulatedSAS ,
BALL::TriangulatedSES
- getDepth() :
BALL::Composite ,
BALL::ResourceEntry , BALL::TBox3<
T > ,
BALL::TSimpleBox3< T >
- getDeterminant() :
BALL::TMatrix4x4< T >
- getDiagonal() :
BALL::TMatrix4x4< T >
- getDimension() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getDirection() :
BALL::EnergyMinimizer ,
BALL::VIEW::LightSource
- getDistance() : BALL::Atom
,
BALL::TVector2< T > ,
BALL::TVector3< T > , BALL::TVector4<
T > ,
BALL::FragmentDistanceCollector ,
BALL::VIEW::Camera ,
BALL::VIEW::AtomDistanceColorProcessor
- getDockDialog() :
BALL::VIEW::DockingController
- getDockingAlgorithm() :
BALL::DockResult ,
BALL::VIEW::DockProgressDialog
- getDockingOptions() :
BALL::DockResult
- getDouble() :
BALL::NamedProperty
- getEdge() :
BALL::GraphFace< Vertex, Edge, Face > ,
BALL::GraphTriangle< Vertex, Edge, Face > ,
BALL::ReducedSurface
- getEdges() :
BALL::GraphFace< Vertex, Edge, Face > ,
BALL::GraphTriangle< Vertex, Edge, Face > ,
BALL::SmartsParser
- getElectronegativity() : BALL::Element
- getElectrostaticEnergy() :
BALL::AmberNonBonded ,
BALL::CharmmNonBonded
- getElement() : BALL::Atom
, BALL::PTE_
- getEnclosingIndices() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getEnclosingValues() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getEnergy() :
BALL::EnergyProcessor ,
BALL::ForceField ,
BALL::ForceFieldComponent ,
BALL::EnergyMinimizer , BALL::FDPB
- getEnergyDifferenceBound() :
BALL::EnergyMinimizer
- getEnergyOutputFrequency() :
BALL::MolecularDynamics ,
BALL::EnergyMinimizer
- getEnergyToAbort() :
BALL::MolecularDynamics
- getEnergyUpdateCounter() :
BALL::EnergyMinimizer
- getEntry() :
BALL::ResourceEntry
- getEquivalence() :
BALL::MMFF94AtomTypeEquivalences
- getErrorCode() : BALL::FDPB
- getErrorMessage() : BALL::FDPB
- getESEnergy() : BALL::AmberFF
,
BALL::CharmmFF , BALL::MMFF94
- getExpandedText() :
BALL::VIEW::Label
- getExponent() :
BALL::MutablePower< Function, DataType >
- getExpression() :
BALL::Selector ,
BALL::NumberOfHydrogenBondAcceptors
- getExpressionString() :
BALL::Expression
- getExpressionTree() :
BALL::Expression
- getEyeDistance() :
BALL::VIEW::Stage
- getFace() :
BALL::GraphEdge< Vertex, Edge, Face > ,
BALL::ReducedSurface
- getFDPBSolver() :
BALL::VIEW::FDPBDialog
- getField() : BALL::String
,
BALL::LineBasedFile
- getFieldQuoted() : BALL::String
- getFile() :
BALL::Exception::GeneralException
- getFileAddress() :
BALL::TCPTransfer
- getFilename() : BALL::INIFile
,
BALL::Parameters , BALL::PDBInfo
,
BALL::ShiftModel ,
BALL::AssignRadiusProcessor ,
BALL::FragmentDB ,
BALL::VIEW::PythonSettings
- getFileStream() : BALL::File
- getFirst() :
BALL::Addition< First, Second, DataType > ,
BALL::Subtraction< First, Second, DataType > ,
BALL::Product<
First, Second, DataType > ,
BALL::Division< First, Second, DataType >
- getFirstAtom() : BALL::Bond
- getFirstChild() :
BALL::Composite
- getFirstEdge() :
BALL::SmartsParser::SmartsParser::SPNode
- getFirstEntry() :
BALL::Directory
- getFirstIndex() :
BALL::Substring
- getFirstSPEdge() :
BALL::SmartsParser::SmartsParser::SPEdge
- getFirstSPNode() :
BALL::SmartsParser::SmartsParser::SPEdge
- getFloat() :
BALL::NamedProperty
- getFlushToDiskFrequency() :
BALL::SnapShotManager
- getFocalDistance() :
BALL::VIEW::Stage
- getForce() : BALL::Atom
- getForceField() :
BALL::ForceFieldComponent ,
BALL::SnapShotManager ,
BALL::MolecularDynamics ,
BALL::EnergyMinimizer ,
BALL::VIEW::MolecularStructure
- getForceUpdateCounter() :
BALL::EnergyMinimizer
- getFormalCharge() : BALL::Atom
- getFourierSpaceMax() : BALL::TFFT1D<
ComplexTraits >
- getFourierSpaceMaxX() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierSpaceMaxY() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierSpaceMaxZ() : BALL::TFFT3D<
ComplexTraits >
- getFourierSpaceMin() : BALL::TFFT1D<
ComplexTraits >
- getFourierSpaceMinX() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierSpaceMinY() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierSpaceMinZ() : BALL::TFFT3D<
ComplexTraits >
- getFourierStepWidth() : BALL::TFFT1D<
ComplexTraits >
- getFourierStepWidthX() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierStepWidthY() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getFourierStepWidthZ() : BALL::TFFT3D<
ComplexTraits >
- getFragment() : BALL::Atom
,
BALL::FragmentDB
- getFragmentCopy() :
BALL::FragmentDB
- getFragmentDB() :
BALL::VIEW::ModularWidget ,
BALL::ReconstructFragmentProcessor ,
BALL::VIEW::MainControl
- getFragmentType() :
BALL::FragmentDB
- getFrameBufferFormat() :
BALL::VIEW::BufferedRenderer
- getFullName() : BALL::Atom
, BALL::Residue
- getFunction() :
BALL::Reciprocal< Function, DataType > ,
BALL::SquareFunction< Function, DataType > ,
BALL::CubicFunction< Function, DataType > ,
BALL::MutablePower< Function, DataType > ,
BALL::NumericalIntegrator< Function, DataType
>
- getGeometricObjects() :
BALL::VIEW::ModelProcessor
- getGradient() :
BALL::EnergyMinimizer
- getGreen() :
BALL::VIEW::ColorRGBA
- getGridCoordinates() : BALL::TFFT1D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getGroup() : BALL::Element
- getHandle() : BALL::Object
- getHeight() :
BALL::Composite , BALL::TBox3<
T > ,
BALL::TSimpleBox3< T > ,
BALL::VIEW::FrameBufferFormat
- getHeightVector() : BALL::TBox3<
T >
- getHelpEntryFor() :
BALL::VIEW::HelpViewer
- getHighlightedRepresentations() :
BALL::VIEW::GeometricControl
- getHostAddress() :
BALL::TCPTransfer
- getHue() :
BALL::VIEW::ColorHSV
- getHybridisationMap() :
BALL::HybridisationProcessor
- getID() : BALL::PDBInfo
,
BALL::NucleicAcid ,
BALL::Nucleotide , BALL::Protein
, BALL::Residue
- getIdentifier() :
BALL::Embeddable
- getIdentity() :
BALL::TMatrix4x4< T >
- getImproperTorsionEnergy() :
BALL::CharmmFF
- getImprovedFlag() :
BALL::StrangLBFGSMinimizer
- getIndex() :
BALL::TContourSurface< T >::TContourSurface::Cube ,
BALL::Atom
,
BALL::SnapShot ,
BALL::GraphEdge< Vertex, Edge, Face > ,
BALL::GraphFace< Vertex, Edge, Face > ,
BALL::GraphTriangle< Vertex, Edge, Face > ,
BALL::GraphVertex< Vertex, Edge, Face > ,
BALL::RDFParameter
- getIndices() :
BALL::HashGrid3< Item > ,
BALL::ClaverieParameter
- getInfoColor() :
BALL::VIEW::Stage
- getInformationVisitor_() :
BALL::VIEW::MolecularControl
- getINIFile() :
BALL::VIEW::MainControl
- getINIFileSectionName() :
BALL::VIEW::PreferencesEntry
- getInitialEnergy() :
BALL::EnergyMinimizer
- getInitialGradient() :
BALL::EnergyMinimizer
- getInsertedAtoms() :
BALL::ReconstructFragmentProcessor
- getInsertionCode() :
BALL::Nucleotide , BALL::Residue
- getInstance_() :
BALL::Embeddable
- getInt() :
BALL::NamedProperty
- getInteger() : BALL::Options
- getIntensity() : BALL::Peak<
PositionType > ,
BALL::VIEW::LightSource
- getInterpolatedValue() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType > , BALL::TFFT1D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getIntersectionPoint() : BALL::RSEdge
- getInterval() :
BALL::PiecewiseFunction
- getIntervalIndex() :
BALL::PiecewiseFunction
- getIntervals() :
BALL::PiecewiseFunction
- getInvalidRecords() : BALL::PDBInfo
- getInverse() :
BALL::TQuaternion< T >
- getKey() :
BALL::ParameterSection ,
BALL::ResourceEntry
- getKineticEnergy() :
BALL::SnapShot ,
BALL::MolecularDynamics
- getLastChild() :
BALL::Composite
- getLastHighLightedMenuEntry() :
BALL::VIEW::MainControl
- getLastIndex() :
BALL::Substring
- getLastPosition() :
BALL::SmartsMatcher::SmartsMatcher::RecStructPool_
- getLayers() :
BALL::BindingPocketProcessor
- getLength() : BALL::Bond
,
BALL::TVector2< T > ,
BALL::TVector3< T > , BALL::TVector4<
T > ,
BALL::VIEW::Tube ,
BALL::VIEW::TwoColoredTube
- getLevel() :
BALL::LogStream
- getLightSources() :
BALL::VIEW::Stage
- getLine() :
BALL::Exception::GeneralException , BALL::INIFile
,
BALL::LineBasedFile
- getLineLevel() :
BALL::LogStream
- getLineNumber() :
BALL::LineBasedFile
- getLineText() :
BALL::LogStream
- getLineTime() :
BALL::LogStream
- getLockingWidget() :
BALL::VIEW::MainControl
- getLoggingFilename() :
BALL::VIEW::MainControl
- getLogicalOperator() :
BALL::SmartsParser::SmartsParser::SPEdge ,
BALL::SmartsParser::SmartsParser::SPNode
- getLogin() :
BALL::TCPTransfer
- getLookAtPosition() :
BALL::VIEW::Camera
- getLookUpVector() :
BALL::VIEW::Camera
- getLower() :
BALL::BoundingBoxProcessor
- getLowerBound() :
BALL::LineSearch
- getLowerIndex() :
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getLowestCommonAncestor() :
BALL::Composite
- getMainControl() :
BALL::VIEW::MainControl ,
BALL::VIEW::ModularWidget
- getMajorRadiusOfTorus() : BALL::RSEdge
- getMajorRevision() :
BALL::VersionInfo
- getMassCenter_() :
BALL::GeometricFit
- getMaxDistanceColor() :
BALL::VIEW::AtomDistanceColorProcessor
- getMaxGradient() :
BALL::EnergyMinimizer
- getMaximalNumberOfIterations() :
BALL::MolecularDynamics
- getMaximalRadius() :
BALL::ReducedSurface
- getMaximalSimulationTime() :
BALL::MolecularDynamics
- getMaximumDisplacement() :
BALL::EnergyMinimizer
- getMaximumNumberOfErrors() :
BALL::ForceField
- getMaximumUnassignedAtoms() :
BALL::AssignBaseProcessor ,
BALL::Templates
- getMaxIndex() : BALL::TFFT1D<
ComplexTraits >
- getMaxIntensity() :
BALL::PeakList< PT >
- getMaxIterations() :
BALL::VIEW::MinimizationDialog
- getMaxNumberOfIterations() :
BALL::EnergyMinimizer
- getMaxNumOfColumns() :
BALL::ShiftedLVMMMinimizer
- getMaxNumOfStoredVectPairs() :
BALL::StrangLBFGSMinimizer
- getMaxSameEnergy() :
BALL::EnergyMinimizer
- getMaxSteps() :
BALL::LineSearch
- getMaxXIndex() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getMaxYIndex() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getMaxZIndex() : BALL::TFFT3D<
ComplexTraits >
- getMenuHint() :
BALL::VIEW::MainControl
- getMesh() :
BALL::VIEW::MeshBuffer
- getMessage() :
BALL::Exception::GeneralException
- getMicroSeconds() :
BALL::PreciseTime
- getMiddleVertex() :
BALL::VIEW::TwoColoredLine ,
BALL::VIEW::TwoColoredTube
- getMinIntensity() :
BALL::PeakList< PT >
- getMinorRevision() :
BALL::VersionInfo
- getModelBuildTime() :
BALL::VIEW::Representation
- getModelName() :
BALL::VIEW::ModelInformation
- getModificationTime() :
BALL::Composite
- getModuleList() :
BALL::ShiftModel
- getModulus() :
BALL::EnumeratorIndex
- getMolecularControlSelection() :
BALL::VIEW::MainControl
- getMolecule() : BALL::System
, BALL::Atom
, BALL::System
- getMoleculeCopy() :
BALL::FragmentDB
- getName() : BALL::Bond
, BALL::Options
,
BALL::Exception::GeneralException ,
BALL::NamedProperty , BALL::PDBInfo
, BALL::Atom
,
BALL::AtomContainer , BALL::Element
,
BALL::ForceField ,
BALL::ForceFieldComponent ,
BALL::ShiftModule ,
BALL::SolventDescriptor ,
BALL::ResidueRotamerSet , BALL::File
- getNamedProperty() :
BALL::PropertyManager
- getNamingStandard() :
BALL::FragmentDB ,
BALL::FragmentDB::FragmentDB::NormalizeNamesProcessor
- getNamingStandards() :
BALL::FragmentDB
- getNeedsSSSR() :
BALL::SmartsParser
- getNegate() :
BALL::ExpressionTree
- getNeighbours() :
BALL::SDGenerator
- getNewHandle() : BALL::Object
- getNext() :
BALL::Composite
- getNextContourLine() :
BALL::TContour< T >
- getNextEntry() :
BALL::Directory
- getNextFree() :
BALL::SmartsMatcher::SmartsMatcher::RecStructPool_
- getNextHandle() : BALL::Object
- getNextPoint() :
BALL::TContourLine< T >
- getNodes() :
BALL::SmartsParser
- getNonbondedEnergy() : BALL::AmberFF
,
BALL::CharmmFF , BALL::MMFF94
- getNormal() :
BALL::TrianglePoint ,
BALL::TSurface< T > , BALL::RSFace
,
BALL::SESVertex
- getNot() :
BALL::SmartsParser::SmartsParser::SPNode
- getNTerminal() : BALL::Chain
, BALL::Protein
,
BALL::SecondaryStructure
- getNucleicAcid() :
BALL::Nucleotide
- getNucleotide() :
BALL::NucleicAcid
- getNullDistanceColor() :
BALL::VIEW::AtomDistanceColorProcessor
- getNumberDensity() :
BALL::SolventDescriptor
- getNumberOfAddedHydrogens() :
BALL::AssignBondOrderProcessor
- getNumberOfAssignments() :
BALL::AssignRadiusProcessor
- getNumberOfATOMRecords() : BALL::PDBInfo
- getNumberOfAtoms() :
BALL::NMRStarFile ,
BALL::TrajectoryFile ,
BALL::ForceField ,
BALL::SnapShot
- getNumberOfAtomTypes() :
BALL::SolventDescriptor
- getNumberOfBondsBuilt() :
BALL::FragmentDB::FragmentDB::BuildBondsProcessor ,
BALL::BuildBondsProcessor
- getNumberOfClasses() :
BALL::PersistenceManager
- getNumberOfColors() :
BALL::VIEW::ColorMap
- getNumberOfComposites() :
BALL::VIEW::CompositeManager
- getNumberOfComputedSolutions() :
BALL::AssignBondOrderProcessor
- getNumberOfEdges() :
BALL::TriangulatedSurface
- getNumberOfEnergyProcessors() :
BALL::ComposedEnergyProcessor
- getNumberOfErrors() :
BALL::AssignRadiusProcessor
- getNumberOfFragments() :
BALL::FragmentDistanceCollector
- getNumberOfHETATMRecords() : BALL::PDBInfo
- getNumberOfHybridisationStatesSet() :
BALL::HybridisationProcessor
- getNumberOfImplicitHydrogens() :
BALL::SmartsParser::SmartsParser::SPAtom
- getNumberOfInsertedAtoms() :
BALL::ReconstructFragmentProcessor
- getNumberOfInverseTransforms() : BALL::TFFT3D<
ComplexTraits > , BALL::TFFT1D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits >
- getNumberOfIterations() :
BALL::MolecularDynamics ,
BALL::EnergyMinimizer , BALL::FDPB
- getNumberOfKeys() :
BALL::ParameterSection
- getNumberOfLines() :
BALL::LogStream , BALL::INIFile
- getNumberOfModels() : BALL::PDBInfo
- getNumberOfMovableAtoms() :
BALL::ForceField
- getNumberOfNormals() :
BALL::TSurface< T >
- getNumberOfPoints() :
BALL::TriangulatedSurface
- getNumberOfRecords() : BALL::PDBInfo
- getNumberOfRepresentations() :
BALL::VIEW::RepresentationManager
- getNumberOfResidueTorsions() :
BALL::ResidueTorsions
- getNumberOfRotamers() :
BALL::ResidueRotamerSet ,
BALL::RotamerLibrary
- getNumberOfRotamerSets() :
BALL::RotamerLibrary
- getNumberOfSections() : BALL::INIFile
- getNumberOfSelectedAtoms() :
BALL::Selector
- getNumberOfSets() :
BALL::MOL2File
- getNumberOfSnapShots() :
BALL::TrajectoryFile
- getNumberOfTorsions() :
BALL::ResidueRotamerSet
- getNumberOfTriangles() :
BALL::TSurface< T > ,
BALL::TriangulatedSurface
- getNumberOfUnassignedAtoms() :
BALL::AssignBaseProcessor ,
BALL::Templates
- getNumberOfVariables() :
BALL::ParameterSection
- getNumberOfVertices() :
BALL::TSurface< T >
- getObject() :
BALL::NamedProperty
- getObjectCreator() :
BALL::VIEW::ServerWidget
- getObjectHeader() :
BALL::PersistenceManager ,
BALL::TextPersistenceManager ,
BALL::XDRPersistenceManager
- getOccupancy() : BALL::PDBAtom
- getOmega() :
BALL::Peptides::AminoAcidDescriptor
- getOpenMode() : BALL::File
- getOppositeEdge() :
BALL::GraphTriangle< Vertex, Edge, Face >
- getOppositeVertex() :
BALL::GraphTriangle< Vertex, Edge, Face >
- getOptions() :
BALL::VIEW::GeometricFitDialog
- getOrder() : BALL::Bond
- getOrientation() :
BALL::GeometricFit
- getOrigin() :
BALL::HashGrid3< Item > ,
BALL::TRegularData1D< ValueType > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType >
- getOrthogonalProjection() :
BALL::TVector3< T >
- getParameterFile() :
BALL::Parameters
- getParameters() :
BALL::ForceField ,
BALL::CharmmEEF1 ,
BALL::CosineTorsion ,
BALL::LennardJones ,
BALL::QuadraticAngleBend ,
BALL::QuadraticBondStretch ,
BALL::QuadraticImproperTorsion ,
BALL::ShiftModule ,
BALL::ClaverieParameter ,
BALL::Potential1210 ,
BALL::MMFF94VDWParameters
- getParent() :
BALL::Composite ,
BALL::VIEW::ConnectionObject ,
BALL::Composite
- getPartialCharge() :
BALL::MMFF94ESParameters
- getPartner() : BALL::Bond
- getPartnerAtom() : BALL::Atom
- getPartnerSPNode() :
BALL::SmartsParser::SmartsParser::SPEdge
- getPassword() :
BALL::TCPTransfer
- getPath() :
BALL::ResourceEntry ,
BALL::Directory
- getPathLength() :
BALL::Composite
- getPattern() :
BALL::RegularExpression
- getPDBAtom() : BALL::Chain
, BALL::Protein
, BALL::Residue
,
BALL::SecondaryStructure , BALL::Protein
- getPeakList() :
BALL::Bruker2DFile ,
BALL::CreateSpectrumProcessor ,
BALL::Experiment< PeakListType >
- getPenaltyClass_() :
BALL::AssignBondOrderProcessor
- getPeriod() : BALL::Element
- getPeriodicBoundary() : BALL::HINFile
- getPerpendicularNormalization() :
BALL::TVector3< T >
- getPhi() :
BALL::Peptides::AminoAcidDescriptor
- getPhysSpaceMax() : BALL::TFFT1D<
ComplexTraits >
- getPhysSpaceMaxX() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getPhysSpaceMaxY() : BALL::TFFT3D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits >
- getPhysSpaceMaxZ() : BALL::TFFT3D<
ComplexTraits >
- getPhysSpaceMin() : BALL::TFFT1D<
ComplexTraits >
- getPhysSpaceMinX() : BALL::TFFT3D<
ComplexTraits > , BALL::TFFT2D<
ComplexTraits >
- getPhysSpaceMinY() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getPhysSpaceMinZ() : BALL::TFFT3D<
ComplexTraits >
- getPhysStepWidth() : BALL::TFFT1D<
ComplexTraits >
- getPhysStepWidthX() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getPhysStepWidthY() : BALL::TFFT2D<
ComplexTraits > , BALL::TFFT3D<
ComplexTraits >
- getPhysStepWidthZ() : BALL::TFFT3D<
ComplexTraits >
- getPitch() :
BALL::VIEW::FrameBufferFormat
- getPixelFormat() :
BALL::VIEW::FrameBufferFormat
- getPluginCount() :
BALL::PluginManager
- getPluginDirectories() :
BALL::PluginManager
- getPluginInstance() :
BALL::PluginManager
- getPoint() :
BALL::SASVertex , BALL::TBox3<
T > ,
BALL::TriangleEdge ,
BALL::TrianglePoint ,
BALL::SESVertex ,
BALL::Triangle
- getPort() :
BALL::VIEW::ServerPreferences ,
BALL::TCPTransfer ,
BALL::VIEW::ServerWidget
- getPosition() :
BALL::CompositeIteratorTraits ,
BALL::Bruker2DFile , BALL::Peak<
PositionType > ,
BALL::CompositeIteratorTraits , BALL::Atom
,
BALL::VIEW::LightSource
- getPotentialEnergy() :
BALL::MolecularDynamics ,
BALL::SnapShot
- getPredicate() :
BALL::CompositeIteratorTraits ,
BALL::Expression ,
BALL::ExpressionTree
- getPreferences() :
BALL::VIEW::MainControl
- getPrefix() :
BALL::RuleEvaluator
- getPrevious() :
BALL::Composite
- getProbeRadius() :
BALL::ReducedSurface
- getProperties() :
BALL::VIEW::Representation
- getProperTorsionEnergy() :
BALL::CharmmFF
- getProperty() :
BALL::SmartsParser::SmartsParser::SPAtom ,
BALL::PropertyManager
- getProtein() : BALL::Residue
, BALL::PDBAtom
, BALL::Chain
, BALL::PDBAtom
,
BALL::SecondaryStructure , BALL::Chain
- getProteinName() :
BALL::Peptides::PeptideBuilder
- getProtocol() :
BALL::TCPTransfer
- getProxy() :
BALL::VIEW::MainControl
- getProxyPort() :
BALL::VIEW::MainControl
- getPsi() :
BALL::Peptides::AminoAcidDescriptor
- getQColor() :
BALL::VIEW::ColorRGBA
- getRadius() :
BALL::VIEW::Tube , BALL::Atom
,
BALL::VIEW::TwoColoredTube
- getRadius_() :
BALL::GeometricFit
- getRange() :
BALL::RadialDistributionFunction ,
BALL::PiecewiseFunction
- getRDF() :
BALL::RDFIntegrator ,
BALL::RDFParameter ,
BALL::RDFSection
- getRDFIntegrator() :
BALL::Pair6_12InteractionEnergyProcessor
- getRDFParameter() :
BALL::Pair6_12InteractionEnergyProcessor
- getReactionFieldEnergy() : BALL::FDPB
- getReal() : BALL::Options
- getReceivedBytes() :
BALL::TCPTransfer
- getRecordIndices() : BALL::PDBInfo
- getRecordNumber() : BALL::PDBFile
- getRecordString() : BALL::PDBFile
- getRecordType() : BALL::PDBFile
- getRed() :
BALL::VIEW::ColorRGBA
- getReferenceFragment() :
BALL::FragmentDB
- getRefresh() :
BALL::VIEW::MinimizationDialog
- getRelativeIndex() :
BALL::GraphTriangle< Vertex, Edge, Face >
- getRemotenessIndicator() : BALL::PDBAtom
- getRepresentation() :
BALL::RadialDistributionFunction ,
BALL::VIEW::DisplayProperties
- getRepresentationManager() :
BALL::VIEW::MainControl
- getRepresentations() :
BALL::VIEW::RepresentationManager
- getRepresentationsOf() :
BALL::VIEW::RepresentationManager
- getResidue() : BALL::Chain
, BALL::Protein
, BALL::PDBAtom
, BALL::Atom
,
BALL::FragmentDB , BALL::Atom
, BALL::Chain
, BALL::PDBAtom
,
BALL::SecondaryStructure
- getResidueCopy() :
BALL::FragmentDB
- getResults() : BALL::MMFF94
,
BALL::ForceField ,
BALL::CharmmFF , BALL::AmberFF
- getRightVector() :
BALL::VIEW::Camera , BALL::TBox3<
T >
- getRingAtoms() :
BALL::RingFinder
- getRingConnections() :
BALL::SmartsParser
- getRMSGradient() :
BALL::ForceField
- getRoot() :
BALL::Composite ,
BALL::SmartsParser ,
BALL::Composite ,
BALL::VIEW::ConnectionObject
- getRotamer() :
BALL::ResidueRotamerSet
- getRotamerSet() :
BALL::RotamerLibrary
- getRotationMatrix() :
BALL::TQuaternion< T >
- getRow() :
BALL::TMatrix4x4< T >
- getRSEdge() : BALL::SESFace
, BALL::SESEdge
- getRSFace() : BALL::SESFace
- getRSVertex() : BALL::SESFace
- getRTMaterial() :
BALL::VIEW::Stage
- getSaturation() :
BALL::VIEW::ColorHSV
- getScores() :
BALL::DockResult
- getScoring() :
BALL::ConformationSet
- getScoringName() :
BALL::DockResult
- getScoringOptions() :
BALL::DockResult ,
BALL::VIEW::DockDialog
- getScreenPosition_() :
BALL::VIEW::EditableScene
- getSecond() : BALL::Product<
First, Second, DataType > ,
BALL::Addition< First, Second, DataType > ,
BALL::Subtraction< First, Second, DataType > ,
BALL::Division< First, Second, DataType >
- getSecondaryStructure() : BALL::Chain
, BALL::Protein
, BALL::Atom
, BALL::Residue
, BALL::Atom
, BALL::Protein
, BALL::Residue
- getSecondAtom() : BALL::Bond
- getSecondEdge() :
BALL::SmartsParser::SmartsParser::SPNode
- getSeconds() :
BALL::PreciseTime
- getSecondSPEdge() :
BALL::SmartsParser::SmartsParser::SPEdge
- getSecondSPNode() :
BALL::SmartsParser::SmartsParser::SPEdge
- getSection() : BALL::INIFile
- getSectionFirstLine() : BALL::INIFile
- getSectionLastLine() : BALL::INIFile
- getSectionLength() : BALL::INIFile
- getSectionName() :
BALL::ParameterSection
- getSelectedAtoms() :
BALL::Selector
- getSelectedDataset() :
BALL::VIEW::DatasetController
- getSelectedDatasets() :
BALL::VIEW::DatasetController
- getSelectedModel() : BALL::PDBFile
- getSelectedSystem() :
BALL::VIEW::MainControl
- getSelection() :
BALL::VIEW::MainControl ,
BALL::VIEW::MolecularControl ,
BALL::VIEW::GenericSelectionMessage ,
BALL::VIEW::GeometricObjectSelectionMessage ,
BALL::VIEW::GenericSelectionMessage ,
BALL::VIEW::MainControl
- getSelectionSize() :
BALL::VIEW::DatasetControl
- getSelectionTime() :
BALL::Composite
- getSender() :
BALL::VIEW::Message
- getServerStatus() :
BALL::VIEW::ServerPreferences
- getSet() :
BALL::MOL2File
- getSettingsFromString() :
BALL::VIEW::DisplayProperties
- getSetupTime() :
BALL::ForceField
- getShift() :
BALL::Bruker2DFile
- getShortcutRegistry() :
BALL::VIEW::MainControl
- getSibling() :
BALL::Composite
- getSimilarEdge() :
BALL::GraphTriangle< Vertex, Edge, Face > ,
BALL::GraphFace< Vertex, Edge, Face >
- getSimulationThread() :
BALL::VIEW::MainControl
- getSize() :
BALL::EnumeratorIndex , BALL::HashSet<
Key > ,
BALL::TRegularData3D< ValueType > , BALL::File
,
BALL::TRegularData2D< ValueType > ,
BALL::HashGridBox3< Item > ,
BALL::BitVector ,
BALL::TRegularData1D< ValueType > , BALL::List<
Value > ,
BALL::HashGrid3< Item > ,
BALL::StringHashMap< Value > ,
BALL::ResourceEntry
- getSizeX() :
BALL::HashGrid3< Item >
- getSizeY() :
BALL::HashGrid3< Item >
- getSizeZ() :
BALL::HashGrid3< Item >
- getSkippedRecords() : BALL::PDBInfo
- getSmartObject() :
BALL::NamedProperty
- getSnapShotFrequency() :
BALL::EnergyMinimizer ,
BALL::MolecularDynamics
- getSnapShotManager() :
BALL::VIEW::SnapshotVisualisationDialog
- getSolution() :
BALL::AssignBondOrderProcessor
- getSolvationEnergy() :
BALL::CharmmNonBonded ,
BALL::CharmmFF
- getSolventAtomDescriptorList() :
BALL::SolventDescriptor
- getSolventDensity() :
BALL::SolventParameter
- getSolventDescription() :
BALL::SolventParameter
- getSolventDescriptor() :
BALL::SolventParameter ,
BALL::Pair6_12InteractionEnergyProcessor
- getSolventName() :
BALL::SolventParameter
- getSpacing() :
BALL::Spectrum< DataT, PeakT, PositionT > ,
BALL::TRegularData2D< ValueType > ,
BALL::TRegularData3D< ValueType > ,
BALL::TRegularData1D< ValueType >
- getSPAtom() :
BALL::SmartsParser::SmartsParser::SPNode
- getSPBond() :
BALL::SmartsParser::SmartsParser::SPEdge
- getSphere() : BALL::SASFace
,
BALL::ReducedSurface
- getSquareDistance() :
BALL::TVector3< T > , BALL::TVector4<
T > ,
BALL::TVector2< T >
- getSquareLength() :
BALL::TVector2< T > ,
BALL::VIEW::Tube , BALL::TVector4<
T > ,
BALL::TVector3< T >
- getStackPages() :
BALL::VIEW::PreferencesEntry
- getStage() :
BALL::VIEW::SceneMessage ,
BALL::VIEW::Renderer
- getStatus() :
BALL::ResidueChecker
- getStatusCode() :
BALL::TCPTransfer
- getStickRadius() :
BALL::VIEW::AddBallAndStickModel
- getStream() :
BALL::TCPTransfer
- getStretchEnergy() : BALL::AmberFF
, BALL::MMFF94
,
BALL::CharmmFF
- getString() :
BALL::NamedProperty
- getStyle() :
BALL::VIEW::MainControlPreferences
- getSubstring() : BALL::String
- getSuperAtomContainer() :
BALL::Molecule ,
BALL::AtomContainer ,
BALL::Molecule ,
BALL::AtomContainer
- getSupportedFileFormats() :
BALL::VIEW::DatasetController
- getSupportedResolution() :
BALL::VIEW::BufferedRenderer
- getSurface() :
BALL::TSimpleBox3< T > , BALL::TBox3<
T >
- getSwapEndian() :
BALL::BinaryFileAdaptor< T >
- getSymbol() : BALL::Element
- getSyntaxTree() :
BALL::ExpressionParser
- getSysPath() :
BALL::PyInterpreter
- getSystem() :
BALL::Molecule ,
BALL::ForceField ,
BALL::VIEW::FDPBDialog ,
BALL::Molecule ,
BALL::SnapShotManager ,
BALL::ForceField
- getSystem1() :
BALL::VIEW::DockDialog
- getSystem2() :
BALL::VIEW::DockDialog
- getSystemTime() : BALL::Timer
- getTemperature() :
BALL::MolecularDynamics , BALL::HINFile
- getTemperatureFactor() : BALL::PDBAtom
- getText() :
BALL::VIEW::Label
- getTime() :
BALL::MolecularDynamics ,
BALL::TimeStamp
- getTimeStep() :
BALL::MolecularDynamics
- getTorsionEnergy() : BALL::AmberFF
,
BALL::CharmmFF , BALL::MMFF94
- getTorsionPhi() : BALL::Residue
- getTorsionPsi() : BALL::Residue
- getTotalCharge() :
BALL::AssignChargeProcessor ,
BALL::AssignBondOrderProcessor
- getTotalCharge_() :
BALL::AssignBondOrderProcessor
- getTotalEnergy() :
BALL::MolecularDynamics
- getTotalPenalty() :
BALL::AssignBondOrderProcessor
- getTotalPenalty_() :
BALL::AssignBondOrderProcessor
- getTrace() :
BALL::TMatrix4x4< T >
- getTraits() :
BALL::BaseIterator< Container, DataType, Position, Traits
>
- getTrajectoryFile() :
BALL::SnapShotManager
- getTransformation() :
BALL::TransformationProcessor
- getTransformationManager() : BALL::File
- getTranslation() :
BALL::GeometricFit ,
BALL::TranslationProcessor
- getTransparency() :
BALL::VIEW::Representation
- getTriangle() :
BALL::TSurface< T > ,
BALL::TriangleEdge
- getTripleProduct() :
BALL::TVector3< T >
- getTwoReferenceAtoms() :
BALL::ReconstructFragmentProcessor
- getType() : BALL::Bond
,
BALL::MolecularInformation , BALL::SESFace
, BALL::Atom
,
BALL::NamedProperty ,
BALL::ExpressionTree ,
BALL::SecondaryStructure ,
BALL::AtomTypes ,
BALL::VersionInfo ,
BALL::SurfaceProcessor , BALL::File
, BALL::SESEdge
,
BALL::VIEW::SceneMessage ,
BALL::VIEW::LightSource ,
BALL::VIEW::DatasetControl ,
BALL::VIEW::AddSurfaceModel ,
BALL::VIEW::DatasetController ,
BALL::Peptides::AminoAcidDescriptor , BALL::File
,
BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::Property
- getTypeName() :
BALL::AtomTypes ,
BALL::Templates , BALL::Atom
- getUnassignedAtoms() :
BALL::Templates ,
BALL::ForceField ,
BALL::AssignBaseProcessor
- getUnit() :
BALL::TVector2< T > ,
BALL::TVector3< T > , BALL::TVector4<
T > ,
BALL::HashGrid3< Item >
- getUnscoredConformations() :
BALL::ConformationSet
- getUnsignedChar() :
BALL::BitVector
- getUnsignedInt() :
BALL::BitVector ,
BALL::NamedProperty
- getUnsignedLong() :
BALL::BitVector
- getUnsignedShort() :
BALL::BitVector
- getUpdateFrequency() : BALL::MMFF94
,
BALL::ForceField , BALL::AmberFF
- getUpdateMethod() :
BALL::ShiftedLVMMMinimizer ,
BALL::ConjugateGradientMinimizer
- getUpdateTime() :
BALL::ForceField
- getUpper() :
BALL::BoundingBoxProcessor
- getUserHomeDir() :
BALL::Directory
- getUserTime() : BALL::Timer
- getUseSelection() :
BALL::ForceField
- getValue() :
BALL::PreferencesObject ,
BALL::VIEW::QColorTable ,
BALL::ResourceEntry ,
BALL::VIEW::HotkeyTable ,
BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::Property
,
BALL::VIEW::ColorHSV ,
BALL::PluginManager ,
BALL::NumericalIntegrator< Function, DataType > ,
BALL::INIFile
,
BALL::VIEW::ColorHSV ,
BALL::VIEW::ShortcutRegistry ,
BALL::ParameterSection ,
BALL::VIEW::PreferencesEntry::PreferencesEntry::ExtendedPreferencesObject
- getVanDerWaalsRadius() : BALL::Element
- getVariantNames() :
BALL::FragmentDB
- getVdwEnergy() :
BALL::CharmmNonBonded
- getVdWEnergy() :
BALL::CharmmFF , BALL::MMFF94
, BALL::AmberFF
- getVdwEnergy() :
BALL::AmberNonBonded
- getVector() : BALL::Options
- getVelocity() : BALL::Atom
- getVersion() : BALL::PDBFile
,
BALL::VersionInfo
- getVertex() :
BALL::TSurface< T > ,
BALL::GraphTriangle< Vertex, Edge, Face > ,
BALL::TSurface< T > ,
BALL::GraphEdge< Vertex, Edge, Face > ,
BALL::VIEW::Vertex ,
BALL::ReducedSurface ,
BALL::VIEW::Vertex
- getVertex1() :
BALL::VIEW::Vertex2
- getVertex1Address() :
BALL::VIEW::Vertex2
- getVertex2() :
BALL::VIEW::Vertex2
- getVertex2Address() :
BALL::VIEW::Vertex2
- getVertexAddress() :
BALL::VIEW::Vertex
- getVertices() :
BALL::VIEW::Vertex2
- getViewPoint() :
BALL::VIEW::Camera
- getViewVector() :
BALL::VIEW::Camera
- getVisitedBonds() :
BALL::RingFinder
- getVolume() : BALL::TBox3<
T > ,
BALL::TSimpleBox3< T >
- getWidth() :
BALL::TSimpleBox3< T > ,
BALL::VIEW::FrameBufferFormat , BALL::Peak<
PositionType > , BALL::TBox3<
T >
- getWorkingDir() :
BALL::VIEW::ModularWidget ,
BALL::VIEW::MainControl
- getXTol() :
BALL::LineSearch
- getZero() :
BALL::TVector3< T > ,
BALL::TVector2< T > , BALL::TVector4<
T > ,
BALL::TMatrix4x4< T >
- getZEType() :
BALL::SmartsParser::SmartsParser::SPBond
- GLDisplayList() :
BALL::VIEW::GLDisplayList
- GlobalExceptionHandler() :
BALL::Exception::GlobalExceptionHandler
- GLOffscreenTarget() :
BALL::VIEW::GLOffscreenTarget
- GLRenderer() :
BALL::VIEW::GLRenderer
- gotoLine() :
BALL::LineBasedFile
- Gradient() :
BALL::Gradient
- GraphEdge() :
BALL::GraphEdge< Vertex, Edge, Face >
- GraphFace() :
BALL::GraphFace< Vertex, Edge, Face >
- GraphTriangle() :
BALL::GraphTriangle< Vertex, Edge, Face >
- GraphVertex() :
BALL::GraphVertex< Vertex, Edge, Face >
Generated on Thu Aug 6 18:30:05 2009 for BALL by
1.5.8