Here is a list of all class members with links to the classes they belong to:

- c -

• c : BALL::Constant
• C : BALL::Element
• c : BALL::PDB::RecordCRYST1::UnitCell , BALL::PDB::Structure::UnitCellInfo
• C : BALL::ShiftModel1D
• c : BALL::SortedPosition3
• C1 : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• C1_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
• C2 : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• C2_ : BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator
• C_BACKBONE : BALL::ShiftModel1D
• c_str() : BALL::String , BALL::Substring
• Ca : BALL::Element
• CADMIUM : BALL::Element
• CAESIUM : BALL::Element
• CAL_PER_JOULE : BALL::Constant
• calcConjugate_() : BALL::GeometricFit
• CALCIUM : BALL::Element
• calculate() : BALL::DockProblem , BALL::FermiBaseFunction , BALL::GeneticAlgorithm , BALL::GridAnalysis , BALL::LinearBaseFunction , BALL::LogP , BALL::ScoringBaseFunction , BALL::VIEW::FDPBDialog
• calculate_() : BALL::ConnectivityBase , BALL::Descriptor , BALL::PartialChargeBase , BALL::SimpleBase , BALL::SurfaceBase , BALL::VIEW::FDPBDialog
• calculateAbsoluteCoordinates() : BALL::VIEW::Stage
• calculateAromaticSystems_() : BALL::Kekuliser
• calculateBALLDescriptors() : BALL::QSAR::QSARData
• calculateBendEmpiricalForceConstant() : BALL::MMFF94StretchBend
• calculateBendEmpiricalReferenceAngle() : BALL::MMFF94StretchBend
• calculateCoefficientStdErrors() : BALL::QSAR::RegressionValidation
• calculateComplementaryBases_() : BALL::VIEW::AddCartoonModel
• calculateConstraintsScore() : BALL::ScoringFunction
• calculated_ : BALL::MMFF94VDWParameters
• calculateDefaultBijection() : BALL::StructureMapper
• calculateDielectricConstant() : BALL::AdvancedElectrostatic
• calculateDistances() : BALL::VIEW::AtomDistanceColorProcessor
• calculateDistanceScores_() : BALL::Kekuliser
• calculateEigenvectors() : BALL::QSAR::PCRModel
• calculateEnergy() : BALL::GeneralizedBornModel
• calculateEuclDistanceMatrix() : BALL::QSAR::ALLModel
• calculateFactors() : BALL::MicroCanonicalMD
• calculateFactors_() : BALL::CanonicalMD
• calculateFDPB() : BALL::VIEW::MolecularStructure
• CalculateFDPBThread() : BALL::VIEW::CalculateFDPBThread , BALL::VIEW::FDPBDialog
• calculateForceFieldEnergy() : BALL::VIEW::MolecularStructure
• calculateFragmentBijection() : BALL::StructureMapper
• calculateGeometricalCenter() : BALL::ScoringFunction
• calculateGridScore() : BALL::GridBasedScoring
• calculateGuidePoints_() : BALL::VIEW::AddBackboneModel
• calculateHBonds() : BALL::VIEW::MolecularStructure
• calculateHeuristic_() : BALL::MMFF94Torsion
• calculateIncludedVertices_() : BALL::VIEW::ModifyRepresentationDialog
• calculateKernelMatrix() : BALL::QSAR::Kernel
• calculateKernelMatrix1() : BALL::QSAR::Kernel
• calculateKernelMatrix2() : BALL::QSAR::Kernel
• calculateKernelMatrix3() : BALL::QSAR::Kernel
• calculateKernelMatrix4() : BALL::QSAR::Kernel
• calculateKernelVector() : BALL::QSAR::Kernel
• calculateKineticEnergy_() : BALL::SnapShotManager
• calculateLinePoints_() : BALL::VIEW::FieldLineCreator
• calculateMatrices_() : BALL::CrystalInfo
• calculateMean() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• calculateMinSpacing() : BALL::HashGrid3< Item >
• calculateModelParts() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
• calculateMoleculeRadius() : BALL::ScoringFunction
• calculateOffsets() : BALL::QSAR::KernelModel , BALL::QSAR::LinearModel , BALL::QSAR::NonLinearModel , BALL::QSAR::RegressionModel
• calculatePEOE() : BALL::PartialChargeProcessor
• calculatePotential() : BALL::GeneralizedBornModel
• calculateProbabilities() : BALL::QSAR::BayesModel , BALL::QSAR::NBModel , BALL::QSAR::SNBModel
• calculateQuality() : BALL::Rescoring
• calculateRamachandranPlot() : BALL::VIEW::MolecularStructure
• calculateRankCorrelation() : BALL::QSAR::Statistics
• calculateReactionFieldEnergy() : BALL::FDPB
• calculateRelativeCoordinates() : BALL::VIEW::Stage
• calculateRibbonEllipse_() : BALL::VIEW::AddBackboneModel
• calculateRibbonPoints_() : BALL::VIEW::AddBackboneModel
• calculateRMSD() : BALL::AtomBijection , BALL::DockingAlgorithm , BALL::StructureMapper , BALL::VIEW::MolecularStructure
• calculateSBTIJK() : BALL::MMFF94StretchBend
• calculateScore() : BALL::Constraint , BALL::PharmacophoreConstraint , BALL::ReferenceArea , BALL::ScoringFunction
• calculateSD() : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• calculateSecondaryStructure() : BALL::VIEW::MolecularStructure
• calculateSelectionMedoid() : BALL::BinaryFingerprintMethods
• calculateSimilarity() : BALL::MolecularSimilarity
• calculateSolvationEnergy() : BALL::GeneralizedBornModel
• calculateSSSR() : BALL::RingPerceptionProcessor
• calculateStaticLigandFragmentEnergy() : BALL::ScoringFunction
• calculateStdErr() : BALL::QSAR::GPModel , BALL::QSAR::Model
• calculateStretchConstant() : BALL::MMFF94StretchBend
• calculateStretchR0() : BALL::MMFF94StretchBend
• calculateTopologicalDescriptors() : BALL::QSAR::QSARData
• calculateTransformation() : BALL::StructureMapper
• calculateTubePoints_() : BALL::VIEW::AddBackboneModel
• calculateVectors_() : BALL::VIEW::Camera
• calculateWeightedKernelMatrix() : BALL::QSAR::Kernel
• calculateWeights() : BALL::QSAR::ALLModel , BALL::QSAR::KNNModel
• calculateXX() : BALL::QSAR::ALLModel
• calculateXY() : BALL::QSAR::ALLModel
• CALCULATION__COULOMB : BALL::PolarSolvation
• CALCULATION__EEF1 : BALL::PolarSolvation
• CALCULATION__FRESNO : BALL::PolarSolvation
• CALCULATION__FULL_CYCLE : BALL::PolarSolvation
• CALCULATION__FULL_CYCLE_FOCUSED : BALL::PolarSolvation
• CALCULATION__FULL_LJ_POTENTIAL : BALL::VanDerWaalsSlick
• CALCULATION__FULL_SLICK : BALL::PolarSolvation
• CALCULATION__NONE : BALL::NonpolarSolvation
• CALCULATION__PCM : BALL::NonpolarSolvation
• CALCULATION__SOFTENED_LJ_POTENTIAL_LOG : BALL::VanDerWaalsSlick
• CALCULATION__SOFTENED_LJ_POTENTIAL_SIMPLE : BALL::VanDerWaalsSlick
• CALCULATION__UHLIG : BALL::NonpolarSolvation
• CALCULATION__VDW_INTERACTION : BALL::NonpolarSolvation
• CALCULATION__VDW_SOLVENT : BALL::NonpolarSolvation
• CalculationMethod : BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::VanDerWaalsSlick
• CALIFORNIUM : BALL::Element
• call_time_map_ : BALL::SMARTSPredicate
• caller_ : BALL::SimpleDownloaderHelper::BasicHelper
• Camera() : BALL::VIEW::Camera
• camera : BALL::VIEW::SetCamera
• camera_ : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::Stage
• camera_offset_ : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
• canBeCopied() : BALL::TriangulatedSurface
• cancel_ : BALL::VIEW::SnapshotVisualisationDialog
• cancel_animation_action_ : BALL::VIEW::Scene
• cancelPressed() : BALL::VIEW::DockDialog , BALL::VIEW::SnapshotVisualisationDialog
• canHandle() : BALL::PluginHandler , BALL::VIEW::DatasetControl , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::ModularWidget , BALL::VIEW::ModularWidgetPluginHandler , BALL::VIEW::MolecularFileDialog , BALL::VIEW::PluginDialog , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
• CannotWrite() : BALL::File::CannotWrite
• CanonicalMD() : BALL::CanonicalMD
• canonizePath() : BALL::FileSystem
• canUseMeshShortcut_() : BALL::VIEW::ChainColorProcessor , BALL::VIEW::ColorProcessor , BALL::VIEW::CustomColorProcessor , BALL::VIEW::MoleculeColorProcessor , BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::ResidueNumberColorProcessor
• canvas_ : BALL::VIEW::CanvasWidget
• CanvasWidget() : BALL::VIEW::CanvasWidget
• canWidget_ : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget
• cap_ : BALL::VIEW::ClippingPlane
• capacity() : BALL::PDBRecords , BALL::String
• capping_color_ : BALL::VIEW::ClippingPlane
• cappingEnabled() : BALL::VIEW::ClippingPlane
• captureCamera() : BALL::VIEW::Scene
• CARBON : BALL::Element
• CARBONEUM : BALL::Element
• carbonyl_influences_amide_field_ : BALL::EFShiftProcessor
• care_for_SS_ : BALL::VIEW::AddBackboneModel
• carlsonEllipticalIntegral1_() : BALL::JohnsonBoveyShiftProcessor
• carlsonEllipticalIntegral2_() : BALL::JohnsonBoveyShiftProcessor
• cart2frac_ : BALL::CrystalInfo
• cartoonDNABaseRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonDNAHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonDNALadderRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonHelixRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonStrandArrowWidthChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonStrandHeightChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonStrandWidthChanged() : BALL::VIEW::ModelSettingsDialog
• cartoonTubeRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• CASE_INSENSITIVE : BALL::String
• CASE_SENSITIVE : BALL::String
• category : BALL::CIFFile::SaveFrame , BALL::ParameterDescription
• cation : BALL::MMFF94AtomTyper::AromaticType
• cation_atoms_ : BALL::MMFF94AtomTyper
• CCP4File() : BALL::CCP4File
• CCW_AL : BALL::SmartsParser
• CCW_AL_OR_UNSPECIFIED : BALL::SmartsParser
• CCW_DEFAULT : BALL::SmartsParser
• CCW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
• CCW_OH : BALL::SmartsParser
• CCW_OH_OR_UNSPECIFIED : BALL::SmartsParser
• CCW_SP : BALL::SmartsParser
• CCW_SP_OR_UNSPECIFIED : BALL::SmartsParser
• CCW_TB : BALL::SmartsParser
• CCW_TB_OR_UNSPECIFIED : BALL::SmartsParser
• CCW_TH : BALL::SmartsParser
• CCW_TH_OR_UNSPECIFIED : BALL::SmartsParser
• Cd : BALL::Element
• Ce : BALL::Element
• cel_texture_ : BALL::VIEW::GLRenderer
• cell_dimension_ : BALL::CCP4File
• cell_dimensions_ : BALL::CrystalInfo
• cell_scaling_ : BALL::DSN6File
• CellType : BALL::CrystalGenerator
• center : BALL::PoseClustering::ClusterProperties , BALL::StaticLigandFragment
• center_ : BALL::GridAnalysis , BALL::RSFace , BALL::VIEW::LabelModel
• CENTER_CAMERA : BALL::VIEW::CompositeMessage
• center_camera_action_ : BALL::VIEW::MolecularControl
• center_data : BALL::QSAR::InputConfiguration
• center_of_torus_ : BALL::RSEdge
• center_processor_ : BALL::CrystalGenerator , BALL::VIEW::LabelModel
• center_y : BALL::QSAR::InputConfiguration
• centerCamera() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
• centerData() : BALL::QSAR::QSARData
• centering() : BALL::QSAR::Statistics
• central_moments : BALL::Spectrum< DataT, PeakT, PositionT >
• CERIUM : BALL::Element
• ces_parsers_ : BALL::GAFFTypeProcessor
• CESelementConnectionPredicate() : BALL::GAFFCESParser::CESelementConnectionPredicate
• CESelementPredicate() : BALL::GAFFCESParser::CESelementPredicate
• CESPredicate() : BALL::GAFFCESParser::CESPredicate
• cesstring_ : BALL::GAFFCESParser
• CESwildcards : BALL::GAFFCESParser::CESPredicate
• CESwildcardsConnectionPredicate() : BALL::GAFFCESParser::CESwildcardsConnectionPredicate
• CESwildcardsPredicate() : BALL::GAFFCESParser::CESwildcardsPredicate
• Cf : BALL::Element
• Chain() : BALL::Chain
• chain : BALL::MOL2File::SubstructureStruct , BALL::PDB::Structure::AtomEntry
• chain_ : BALL::NMRStarFile::BALLToBMRBMapper
• chain_id : BALL::PDB::AdditionalAtomInfo
• chain_ID : BALL::PDB::RecordDBREF , BALL::PDB::RecordSEQRES , BALL::PDB::Residue
• chain_ID_ : BALL::PDBFile
• chain_residue_names : BALL::PDB::Structure
• ChainColorProcessor() : BALL::VIEW::ChainColorProcessor
• ChainIteratorTraits() : BALL::ChainIteratorTraits
• chainname_ : BALL::Peptides::PeptideBuilder
• chains_ : BALL::SDGenerator
• change_charge_ : BALL::VIEW::EditMode
• changeAllXToY_() : BALL::SecondaryStructureProcessor
• changeAtomElementTriggered_() : BALL::VIEW::EditMode
• changeBondOrder() : BALL::VIEW::Scene
• changeBondOrder_() : BALL::VIEW::EditMode
• CHANGED__TYPE : BALL::VIEW::EditOperation
• changed_color_processor_ : BALL::VIEW::Representation
• CHANGED_COMPOSITE : BALL::VIEW::CompositeMessage
• CHANGED_COMPOSITE_HIERARCHY : BALL::VIEW::CompositeMessage
• changed_selection_color_ : BALL::VIEW::DisplayProperties
• changedEditThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
• changedNAMode_() : BALL::VIEW::ModelSettingsDialog
• changedRangeMax() : BALL::VIEW::RaytraceableContourSurfaceDialog
• changedRangeMin() : BALL::VIEW::RaytraceableContourSurfaceDialog
• changedRangeSteps() : BALL::VIEW::RaytraceableContourSurfaceDialog
• changeDrawingMode_() : BALL::VIEW::ModifyRepresentationDialog
• changeDrawingModeTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
• changedSliderThreshold() : BALL::VIEW::RaytraceableContourSurfaceDialog
• changeEvent() : BALL::Mainframe
• changeLock() : BALL::VIEW::ServerWidget
• changeMode_() : BALL::VIEW::EditSingleShortcut
• changeProteinOrientation_() : BALL::GeometricFit
• changeRotamer_() : BALL::VIEW::MolecularControl
• changeShortcut() : BALL::VIEW::ShortcutRegistry
• changeToUserHomeDir() : BALL::Directory
• ChannelFormat() : BALL::VIEW::ChannelFormat
• ChannelID : BALL::VIEW::ChannelFormat
• ChannelType : BALL::VIEW::ChannelFormat
• char_count : BALL::ExpressionParser::State , BALL::SmartsParser::State , BALL::SmilesParser::State
• CHARACTER_CLASS__ASCII_ALPHA : BALL::String
• CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
• CHARACTER_CLASS__ASCII_FLOAT : BALL::String
• CHARACTER_CLASS__ASCII_LOWER : BALL::String
• CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
• CHARACTER_CLASS__ASCII_UPPER : BALL::String
• CHARACTER_CLASS__QUOTES : BALL::String
• CHARACTER_CLASS__WHITESPACE : BALL::String
• charge : BALL::MOL2File::AtomStruct , BALL::MOLFile::AtomStruct , BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordHETATM , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ
• CHARGE : BALL::SmartsParser::SPAtom
• charge_ : BALL::Atom
• CHARGE_DISTRIBUTION : BALL::FDPB::Default , BALL::FDPB::Option
• charge_factor_ : BALL::EFShiftProcessor
• charge_map_ : BALL::EFShiftProcessor
• charge_menu_ : BALL::VIEW::EditMode
• charge_processor_ : BALL::MMFF94 , BALL::VIEW::FDPBDialog
• charge_rule_processor_ : BALL::VIEW::FDPBDialog
• charge_type : BALL::MOL2File::MoleculeStruct
• ChargeRuleProcessor() : BALL::ChargeRuleProcessor
• charges_ : BALL::ElectrostaticPotentialCalculator , BALL::HMOFile , BALL::Templates
• charmm_extra_block_A_ : BALL::DCDFile
• charmm_extra_block_B_ : BALL::DCDFile
• CHARMM_FF : BALL::VIEW::MolecularStructure
• CharmmBend() : BALL::CharmmBend
• CharmmConfigurationDialog() : BALL::VIEW::CharmmConfigurationDialog
• CharmmEEF1() : BALL::CharmmEEF1
• CharmmFF() : BALL::CharmmFF
• CharmmImproperTorsion() : BALL::CharmmImproperTorsion
• CharmmNonBonded() : BALL::CharmmNonBonded
• CharmmStretch() : BALL::CharmmStretch
• CharmmTorsion() : BALL::CharmmTorsion
• check() : BALL::Result::ResultData , BALL::SolventExcludedSurface
• CHECK_AFTER_ITERATIONS : BALL::FDPB::Default , BALL::FDPB::Option
• check_applicability_ : BALL::Rescoring
• check_duplicate_keys_ : BALL::INIFile
• CHECK_RESIDUE : BALL::VIEW::MolecularTaskMessage
• checkable_ : BALL::VIEW::GenericControl
• checkActivityIDs() : BALL::QSAR::QSARData
• checkApplyButton_() : BALL::VIEW::GridVisualizationDialog , BALL::VIEW::ModifyRepresentationDialog
• checkAtomPositions() : BALL::ResidueChecker
• checkAtomType() : BALL::MMFF94
• checkCharge() : BALL::ResidueChecker
• checkCompatibility() : BALL::FlexibleMolecule
• checkCompleteness() : BALL::ResidueChecker
• checkDrawingPrecision_() : BALL::VIEW::DisplayProperties
• checkEdges_() : BALL::RingPerceptionProcessor
• checkForAtomOverlaps() : BALL::ScoringFunction
• checkforDiscreteY() : BALL::QSAR::QSARData
• checkGAFFProperties() : BALL::GAFFCESParser::APSMatcher
• checkGL() : BALL::VIEW::GLRenderWindow
• checkHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkID() : BALL::Conformation
• checkInclude_() : BALL::VIEW::ModifyRepresentationDialog
• checkLoop() : BALL::VIEW::SnapshotVisualisationDialog
• checkMenu() : BALL::VIEW::DatasetControl , BALL::VIEW::DatasetController , BALL::VIEW::DemoTutorialDialog , BALL::VIEW::DisplayProperties , BALL::VIEW::DockingController , BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile , BALL::VIEW::FileObserver , BALL::VIEW::GeometricControl , BALL::VIEW::LabelDialog , BALL::VIEW::ModularWidget , BALL::VIEW::MolecularControl , BALL::VIEW::MolecularFileDialog , BALL::VIEW::MolecularStructure , BALL::VIEW::PubChemDialog , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::VIEW::TestFramework , BALL::VIEW::UndoManagerDialog
• checkMenus() : BALL::VIEW::MainControl
• checkName() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkNoLoop() : BALL::VIEW::SnapshotVisualisationDialog
• checkObjectHeader() : BALL::PersistenceManager
• checkObjectPointerArrayHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectPointerArrayTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectPointerHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectReferenceHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectTrailer() : BALL::PersistenceManager
• checkOverlap_() : BALL::SDGenerator
• checkPrimitiveHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkPrimitiveTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkResidue() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
• checkRock() : BALL::VIEW::SnapshotVisualisationDialog
• checkStorableHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStorableTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStreamHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStreamTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkTemplate() : BALL::ResidueChecker
• checkTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• chemical_environment : BALL::GAFFTypeProcessor::TypeDefinition
• chemical_formula : BALL::PDB::RecordFORMUL
• chemical_name : BALL::PDB::RecordHETNAM
• chemical_units : BALL::NMRStarFile::MolecularSystem
• ChemicalUnit() : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
• CHGroup() : BALL::CHPI::CHGroup , BALL::CHPISlick::CHGroup
• chi1 : BALL::Rotamer
• chi2 : BALL::Rotamer
• chi3 : BALL::Rotamer
• chi4 : BALL::Rotamer
• CHI__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• CHI__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• CHI__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• ChildCompositeConstIterator : BALL::Composite
• ChildCompositeConstReverseIterator : BALL::Composite
• ChildCompositeIterator : BALL::Composite
• ChildCompositeIteratorTraits : BALL::Composite , BALL::Composite::ChildCompositeIteratorTraits
• ChildCompositeReverseIterator : BALL::Composite
• children : BALL::ExpressionParser::SyntaxTree , BALL::GAFFCESParser::CESPredicate
• children_ : BALL::ExpressionTree
• ChildrenIterator : BALL::GRAPH::PostOrderFolding< Tree, From, To, Functor >
• chiral : BALL::MOLFile::CountsStruct
• CHIRAL_CLASS_UNSPECIFIED : BALL::SmartsParser
• chiral_class_value : BALL::SmartsParser::SPAtom::PropertyValue
• ChiralClass : BALL::SmartsParser , BALL::SmilesParser
• ChiralDef : BALL::SmilesParser
• CHIRALITY : BALL::SmartsParser::SPAtom
• chirality_ : BALL::SmilesParser::SPAtom
• CHLORINE : BALL::Element
• CHOOSE_FF : BALL::VIEW::MainControl
• CHOOSE_MODEL : BALL::PDBFile::Default , BALL::PDBFile::Option
• chooseAmberFF() : BALL::VIEW::MolecularStructure
• chooseCharmmFF() : BALL::VIEW::MolecularStructure
• chooseColor() : BALL::VIEW::ColorButton , BALL::VIEW::ContourSurfaceDialog
• chooseDCDFile() : BALL::VIEW::MolecularDynamicsDialog
• chooseFile() : BALL::VIEW::FileObserver
• chooseForceField() : BALL::VIEW::MolecularStructure
• chooseMMFF94() : BALL::VIEW::MolecularStructure
• chooseName_() : BALL::VIEW::PropertyEditor
• choosePressed() : BALL::VIEW::ModifyRepresentationDialog
• chooseSolventFile() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::MMFF94ConfigurationDialog
• CHPI() : BALL::CHPI , BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Default , BALL::SLICKScore::Option
• CHPISlick() : BALL::CHPISlick
• CHROMIUM : BALL::Element
• CHX_ANGLE_LOWER : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option
• ci_ptr_ : BALL::CrystalGenerator
• CIFFile() : BALL::CIFFile
• circle0_ : BALL::RSEdge
• circle1_ : BALL::RSEdge
• circle_ : BALL::SASEdge , BALL::SESEdge
• Cl : BALL::Element
• CLASH_FACTOR : BALL::BindingPocketProcessor::Default , BALL::BindingPocketProcessor::Option
• class_ : BALL::VIEW::PyWidget
• class_names_ : BALL::QSAR::QSARData
• classes_to_files_ : BALL::VIEW::HelpViewer
• classification : BALL::PDB::RecordHEADER
• ClassificationModel() : BALL::QSAR::ClassificationModel
• ClassificationValidation : BALL::QSAR::ClassificationModel , BALL::QSAR::ClassificationValidation , BALL::QSAR::Model , BALL::QSAR::QSARData
• CLAVERIE_FILENAME : BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• ClaverieParameter() : BALL::ClaverieParameter
• clean() : BALL::ReducedSurface , BALL::SolventExcludedSurface
• cleanPool() : BALL::GeneticAlgorithm
• cleanUp() : BALL::GeneticAlgorithm
• clear() : BALL::AmberFF , BALL::AmberNonBonded , BALL::AmiraMeshFile , BALL::AromaticRingStacking , BALL::AssignBondOrderProcessor , BALL::AStarBondOrderStrategy , BALL::Atom , BALL::AtomContainer , BALL::AtomTypes , BALL::Bit , BALL::BitVector , BALL::Bond , BALL::BondOrderAssignment , BALL::BondOrderAssignmentStrategy , BALL::BranchAndBoundBondOrderStrategy , BALL::BuriedPolar , BALL::CCP4File , BALL::CharmmEEF1 , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::CHPI , BALL::CHPISlick , BALL::CIFFile::Datablock , BALL::CIFFile::Item , BALL::CIFFile::SaveFrame , BALL::ClaverieParameter , BALL::Client , BALL::ComposedEnergyProcessor , BALL::Composite , BALL::ConnectedComponentsProcessor , BALL::ConnectedToPredicate , BALL::CosineTorsion , BALL::DCDFile , BALL::Directory , BALL::DisulfidBondProcessor , BALL::DSN6File , BALL::Element , BALL::EnergyProcessor , BALL::Expression , BALL::ExpressionParser::SyntaxTree , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::File , BALL::ForceField , BALL::ForceFieldParameters , BALL::FPTBondOrderStrategy , BALL::FPTBondOrderStrategy::DPBackTracking_ , BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_ , BALL::GAFFCESParser::CESPredicate , BALL::GeneralizedBornModel , BALL::HashGrid3< Item > , BALL::HashGridBox3< Item > , BALL::HashSet< Key > , BALL::HMOFile , BALL::HydrogenBond , BALL::HydrogenBondSlick , BALL::ILPBondOrderStrategy , BALL::INIFile , BALL::Kekuliser , BALL::KGreedyBondOrderStrategy , BALL::LennardJones , BALL::LineBasedFile , BALL::Lipophilic , BALL::LogStream , BALL::MMFF94 , BALL::MMFF94AtomTypeEquivalences , BALL::MMFF94BendParameters , BALL::MMFF94ChargeProcessor , BALL::MMFF94ESParameters , BALL::MMFF94NonBonded , BALL::MMFF94ParametersBase , BALL::MMFF94PlaneParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94StretchParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94VDWParameters , BALL::MolecularInformation , BALL::MolecularInteractions , BALL::MoleculeObjectCreator , BALL::MOPACOutputFile , BALL::NamedProperty , BALL::NMRStarFile::BALLToBMRBMapper , BALL::NMRStarFile , BALL::NMRStarFile::EntryInformation , BALL::NMRStarFile::MolecularSystem::ChemicalUnit , BALL::NMRStarFile::MolecularSystem , BALL::NMRStarFile::MolecularSystem::RelatedDB , BALL::NMRStarFile::MonomericPolymer , BALL::NMRStarFile::MonomericPolymer::HomologDB , BALL::NMRStarFile::Sample , BALL::NMRStarFile::Sample::Component , BALL::NonpolarSolvation , BALL::NucleicAcid , BALL::Nucleotide , BALL::Object , BALL::ObjectCreator , BALL::Options , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::Parameters , BALL::ParameterSection , BALL::PartialBondOrderAssignment , BALL::PCMCavFreeEnergyProcessor , BALL::PDB::BookKeeping , BALL::PDB::RecordCON061 , BALL::PDB::RecordCON062 , BALL::PDB::RecordCON063 , BALL::PDB::RecordCON064 , BALL::PDB::RecordCON06 , BALL::PDB::RecordCONECT , BALL::PDB::RecordHELIX , BALL::PDB::RecordMASTER , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSHEET , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTURN , BALL::PDB::Residue , BALL::PDB::Structure , BALL::PDBAtom , BALL::PDBFile , BALL::PDBInfo , BALL::PDBRecords , BALL::PeriodicBoundary , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::PierottiCavFreeEnergyProcessor , BALL::PLP , BALL::Polarity , BALL::PolarSolvation , BALL::Potential1210 , BALL::PreciseTime , BALL::PropertyManager , BALL::Protein , BALL::PTE_ , BALL::QuadraticAngleBend , BALL::QuadraticBondStretch , BALL::QuadraticImproperTorsion , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFParameter , BALL::RDFSection , BALL::ReducedSurface , BALL::RegularExpression , BALL::ReissCavFreeEnergyProcessor , BALL::Residue , BALL::ResidueTorsions , BALL::ResourceEntry , BALL::ResourceFile , BALL::Result , BALL::RingAnalyser , BALL::RombergIntegrator< Function, DataType > , BALL::RotamerLibrary , BALL::RuleEvaluator , BALL::RuleProcessor , BALL::ScoringComponent , BALL::ScoringFunction , BALL::SDGenerator , BALL::SecondaryStructure , BALL::Selectable , BALL::Selector , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModel , BALL::ShiftModule , BALL::SideChainPlacementProcessor , BALL::SLICKEnergy , BALL::SLICKScore , BALL::SmartsMatcher::RecStruct_ , BALL::SmartsMatcher::RecStructCore_ , BALL::SmartsParser , BALL::SnapShot , BALL::SnapShotManager , BALL::SolventAccessibleSurface , BALL::SolventDescriptor , BALL::SolventExcludedSurface , BALL::SolventParameter , BALL::SpaceGroupParameters , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::String , BALL::Substring , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::Templates , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::Timer , BALL::TimeStamp , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::TrajectoryFile , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TriangulatedSurface , BALL::Triple< T1, T2, T3 > , BALL::TRRFile , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::UhligCavFreeEnergyProcessor , BALL::VanDerWaalsSlick , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AddSurfaceModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::Box , BALL::VIEW::Camera , BALL::VIEW::ClippingPlane , BALL::VIEW::ColorExtension2 , BALL::VIEW::ColorHSV , BALL::VIEW::ColorProcessor , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::CompositeManager , BALL::VIEW::ConnectionObject , BALL::VIEW::Dataset , BALL::VIEW::Disc , BALL::VIEW::GeometricControl , BALL::VIEW::GeometricObject , BALL::VIEW::GLDisplayList , BALL::VIEW::GLRenderer , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Label , BALL::VIEW::Line , BALL::VIEW::MainControl , BALL::VIEW::Mesh , BALL::VIEW::MeshBuffer , BALL::VIEW::ModelProcessor , BALL::VIEW::ModularWidget , BALL::VIEW::MultiColorExtension , BALL::VIEW::MultiLine , BALL::VIEW::Point , BALL::VIEW::POVRenderer , BALL::VIEW::PyWidget , BALL::VIEW::Renderer , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::Scene , BALL::VIEW::SDWidget , BALL::VIEW::ServerWidget , BALL::VIEW::ShortcutRegistry , BALL::VIEW::SimpleBox , BALL::VIEW::Sphere , BALL::VIEW::Stage , BALL::VIEW::STLRenderer , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::Vertex2 , BALL::VIEW::Vertex , BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• clear_() : BALL::MOL2File , BALL::PoseClustering , BALL::VIEW::AddBackboneModel
• clear_animation_action_ : BALL::VIEW::Scene
• clear_selection_action_ : BALL::VIEW::MainControl
• clearAtomGrid() : BALL::VIEW::ColorProcessor
• clearBonds() : BALL::GAMESSLogFile
• clearBuffer() : BALL::SnapShotManager , BALL::VIEW::MeshBuffer
• clearClipboard() : BALL::VIEW::MolecularControl
• clearComposites() : BALL::VIEW::AddSurfaceModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::ModelProcessor
• clearConformations() : BALL::FlexibleMolecule
• clearData() : BALL::ScoreGridSet , BALL::VIEW::MainControl
• clearEntries() : BALL::VIEW::AssignBondOrderResultsDialog , BALL::VIEW::PubChemDialog
• clearFields_() : BALL::VIEW::LightSettings
• clearGeometricObjects() : BALL::VIEW::Representation
• clearHistory_() : BALL::VIEW::PyWidget
• clearKeySequences() : BALL::VIEW::ShortcutRegistry
• clearLastPtr() : BALL::AutoDeletable
• clearLightSources() : BALL::VIEW::Stage
• clearMutations() : BALL::DNAMutator , BALL::Mutator
• clearNames_() : BALL::VIEW::GLRenderer
• clearNormals() : BALL::TSurface< T >
• clearParameters() : BALL::CIFFile , BALL::GAMESSDatFile
• clearProperty() : BALL::PropertyManager
• clearRecordedAnimation() : BALL::VIEW::Scene
• clearScript() : BALL::VIEW::PyWidget
• clearSelection() : BALL::VIEW::MainControl
• clearSelector() : BALL::VIEW::MolecularControl
• ClearShiftProcessor() : BALL::ClearShiftProcessor
• clearStartupScript() : BALL::VIEW::PythonSettings
• clearStatusBarText_() : BALL::VIEW::MainControl
• clearSticks() : BALL::Spectrum< DataT, PeakT, PositionT >
• clearStoredInteractions_() : BALL::ScoringFunction
• clearTriangles() : BALL::TSurface< T >
• clearUsedAtoms_() : BALL::VIEW::AtomBondModelBaseProcessor
• clearVertexBuffersFor() : BALL::VIEW::GLRenderer
• clearVertices() : BALL::TSurface< T >
• clicked() : BALL::VIEW::FDPBDialog
• Client() : BALL::Client
• clinkInner_() : BALL::PoseClustering
• clipboard_id_ : BALL::VIEW::MolecularControl
• clipping_plane_ : BALL::VIEW::ClippingDialog
• clipping_plane_context_menu_ : BALL::VIEW::GeometricControl
• clipping_planes_ : BALL::VIEW::POVRenderer , BALL::VIEW::RepresentationManager , BALL::VIEW::XML3DRenderer
• ClippingDialog() : BALL::VIEW::ClippingDialog
• ClippingPlane() : BALL::VIEW::ClippingPlane
• clone() : BALL::Composite , BALL::DoubleGene , BALL::GenericGene , BALL::QuaternionGene , BALL::VIEW::BoolEditorWidget , BALL::VIEW::DoubleEditorWidget , BALL::VIEW::FloatEditorWidget , BALL::VIEW::IntEditorWidget , BALL::VIEW::PDBInfoEditorWidget , BALL::VIEW::PropDeleteWidget , BALL::VIEW::PropEditorWidget , BALL::VIEW::StringEditorWidget , BALL::VIEW::UIntEditorWidget
• cloneBond() : BALL::Atom
• close() : BALL::DockResultFile , BALL::File , BALL::GenericMolFile , BALL::ParamFile , BALL::ResourceFile
• close_pressed() : BALL::VIEW::PeptideDialog , BALL::VIEW::UndoManagerDialog
• closeClicked() : BALL::VIEW::DockResultDialog
• closeEvent() : BALL::VIEW::MainControl , BALL::VIEW::SnapshotVisualisationDialog
• CLUSTER_METHOD : BALL::PoseClustering::Default , BALL::PoseClustering::Option
• cluster_representatives_ : BALL::PoseClustering
• cluster_scores_ : BALL::PoseClustering
• cluster_tree_ : BALL::PoseClustering , BALL::PoseClustering::ClusterTreeNodeComparator , BALL::PoseClustering::ClusterTreeWriter_
• clusterRings_() : BALL::RingAnalyser
• clusters_ : BALL::PoseClustering
• ClusterTree : BALL::PoseClustering
• ClusterTreeNode : BALL::PoseClustering
• ClusterTreeNodeComparator() : BALL::PoseClustering::ClusterTreeNodeComparator
• ClusterTreeWriter_() : BALL::PoseClustering::ClusterTreeWriter_
• Cm : BALL::Element
• cm_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap > , BALL::VIEW::ColorByGridProcessor
• Co : BALL::Element
• coarsePenalty() : BALL::PartialBondOrderAssignment
• COBALT : BALL::Element
• code_ : BALL::PDBFile
• coefficient_ : BALL::ScoringComponent
• coefficients_ : BALL::PiecewiseFunction
• COIL : BALL::SecondaryStructure
• col_axis_ : BALL::CCP4File
• col_buffer_ : BALL::LineBasedFile
• collapseAll() : BALL::VIEW::MolecularControl
• collectAromaticAtoms_() : BALL::Kekuliser
• collectAtoms_() : BALL::ForceField
• collectBonds_() : BALL::MMFF94
• collectClasses_() : BALL::VIEW::HelpViewer
• collectClusterBelow_() : BALL::PoseClustering
• collectHeteroAtomTypes() : BALL::MMFF94AtomTyper
• collectPositions() : BALL::VIEW::AddBackboneModel
• collectRecursive_() : BALL::VIEW::Representation
• collectRingBonds_() : BALL::VIEW::AddBallAndStickModel
• collectRings_() : BALL::MMFF94
• collectSystems_() : BALL::Kekuliser
• color_ : BALL::VIEW::ColorButton , BALL::VIEW::LabelModel , BALL::VIEW::LightSource , BALL::VIEW::MeshBuffer
• color_index_ : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• color_map_ : BALL::VIEW::ElementColorProcessor , BALL::VIEW::POVRenderer , BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::XML3DRenderer
• color_menu_ : BALL::VIEW::MolecularControl
• color_number_ : BALL::VIEW::ColorMap
• color_processor_ : BALL::VIEW::Representation
• color_strings_ : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• ColorButton() : BALL::VIEW::ColorButton
• colorByCustomColor_() : BALL::VIEW::ModifyRepresentationDialog
• colorByGrid_() : BALL::VIEW::ModifyRepresentationDialog
• ColorByGridProcessor() : BALL::VIEW::ColorByGridProcessor
• colorChanged() : BALL::VIEW::ColorButton
• ColorExtension2() : BALL::VIEW::ColorExtension2
• ColorHSV() : BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA
• coloring_method_ : BALL::VIEW::Representation
• coloring_settings_ : BALL::VIEW::DisplayProperties
• coloring_update_enabled_ : BALL::VIEW::Representation
• coloringMuteableByDisplayProperties() : BALL::VIEW::ModelInformation
• coloringOptionsPressed() : BALL::VIEW::DisplayProperties
• ColoringSettingsDialog() : BALL::VIEW::ColoringSettingsDialog
• coloringUpdateEnabled() : BALL::VIEW::Representation
• coloringUpdatesChanged() : BALL::VIEW::DisplayProperties
• ColorMap() : BALL::VIEW::ColorMap , BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• colorMeshFromGrid_() : BALL::VIEW::ColorProcessor
• colorPressed() : BALL::VIEW::LightSettings
• ColorProcessor() : BALL::VIEW::ColorProcessor
• ColorRGBA : BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA
• colors : BALL::VIEW::MultiColorExtension
• colors_ : BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::PositionColorProcessor
• ColorTable() : BALL::VIEW::ColorTable
• ColorUnit() : BALL::VIEW::ColorUnit
• ColorUnitHue() : BALL::VIEW::ColorUnitHue
• COLUMN_ID__Properties : BALL::VIEW::GeometricControl
• COLUMN_ID__TYPE : BALL::VIEW::GeometricControl
• column_names_ : BALL::QSAR::QSARData
• columnCount() : BALL::VIEW::ShortcutTableModel
• ColumnID : BALL::VIEW::GeometricControl
• com_ : BALL::PoseClustering
• combine() : BALL::FPTBondOrderStrategy::Assignment_
• combine_operation_ : BALL::GridBasedScoring
• combineDatapoints() : BALL::MPISupport
• combineEachSolution_() : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• combiner_ : BALL::FPTBondOrderStrategy
• combo_box_ : BALL::VIEW::PyWidget
• ComboBoxDelegate() : BALL::VIEW::ComboBoxDelegate
• comm_size_ : BALL::MPISupport
• Command : BALL::Client
• COMMAND__SEND_OBJECT : BALL::Client
• COMMAND__UNKOWN : BALL::Client
• CommandlineParser() : BALL::CommandlineParser
• comment : BALL::MOL2File::MoleculeStruct , BALL::MOL2File::SetStruct , BALL::MOL2File::SubstructureStruct , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordHELIX , BALL::PDB::RecordMODRES , BALL::PDB::RecordSEQADV , BALL::PDB::RecordTURN , BALL::PDB::RecordTVECT , BALL::VIEW::Hotkey
• comment_format : BALL::VIEW::PythonHighlighter
• comment_pattern : BALL::VIEW::PythonHighlighter
• comments_ : BALL::HMOFile , BALL::MOL2File
• common_name : BALL::NMRStarFile::MonomericPolymer
• Comparator() : BALL::Comparator< T >
• compare() : BALL::FPTBondOrderStrategy::Assignment_ , BALL::FPTBondOrderStrategy::BackTrackingState_ , BALL::FPTBondOrderStrategy::DPConfig_ , BALL::FPTBondOrderStrategy::DPJoinMapComparator_ , BALL::Object , BALL::String
• Compare_() : BALL::DockResult::Compare_ , BALL::VIEW::DockResultDialog::Compare_
• compare_record_type_format_ : BALL::PDBFile
• compareChains_() : BALL::SDGenerator
• compareChildren_() : BALL::ExpressionTree
• compareJoinTablePairs_() : BALL::FPTBondOrderStrategy
• CompareMode : BALL::String
• compareTablePointerEntries_() : BALL::FPTBondOrderStrategy
• compilePattern() : BALL::VIEW::PythonHighlighter
• complement_selection_action_ : BALL::VIEW::MainControl
• complementary_bases_ : BALL::VIEW::AddCartoonModel
• complementSelection() : BALL::VIEW::MainControl
• complementSelectionHelper_() : BALL::VIEW::MainControl
• complete_prefix_ : BALL::VIEW::PyWidget
• completionSelected_() : BALL::VIEW::PyWidget
• Complex : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• complex_atoms_ : BALL::PB
• ComplexPrecision : BALL::DoubleTraits , BALL::FloatTraits , BALL::LongDoubleTraits
• ComplexVector : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• Component : BALL::ConnectedComponentsProcessor , BALL::NMRStarFile::Sample::Component
• component_ : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
• component_description : BALL::PDB::RecordCOMPND
• component_grouping_ : BALL::SmartsParser
• component_name : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
• component_no_ : BALL::SmartsParser , BALL::SmartsParser::SPNode
• component_number : BALL::PDB::RecordFORMUL
• component_solutions_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• ComponentFilter_() : BALL::TreeWidth< UndirectedGraph >::ComponentFilter_< ComponentMap >
• components : BALL::NMRStarFile::Sample
• components_ : BALL::ComposedEnergyProcessor , BALL::ConnectedComponentsProcessor , BALL::ForceField , BALL::TreeWidth< UndirectedGraph >
• ComponentVector : BALL::ConnectedComponentsProcessor
• ComposedEnergyProcessor() : BALL::ComposedEnergyProcessor
• Composite() : BALL::Composite
• composite_ : BALL::VIEW::BALLThread , BALL::VIEW::CompositeMessage , BALL::VIEW::Dataset
• composite_hashmap_ : BALL::VIEW::ServerWidget::BALLViewServer
• composite_iterator_ : BALL::CompositeIteratorTraits
• composite_manager_ : BALL::VIEW::MainControl
• composite_name_ : BALL::VIEW::CompositeMessage
• composite_properties_action_ : BALL::VIEW::MolecularControl
• composite_to_item_ : BALL::VIEW::MolecularControl
• composite_to_position_ : BALL::VIEW::PositionColorProcessor
• CompositeConstIterator : BALL::Composite , BALL::VIEW::CompositeManager
• CompositeConstReverseIterator : BALL::Composite
• CompositeHashMap : BALL::VIEW::ServerWidget::BALLViewServer
• CompositeIterator : BALL::Composite , BALL::VIEW::CompositeManager
• CompositeIteratorTraits : BALL::Composite , BALL::Composite::CompositeIteratorTraits , BALL::CompositeIteratorTraits
• CompositeManager() : BALL::VIEW::CompositeManager
• CompositeMessage() : BALL::VIEW::CompositeMessage
• CompositeMessageType : BALL::VIEW::CompositeMessage
• CompositeProperties() : BALL::VIEW::CompositeProperties
• compositeProperties() : BALL::VIEW::MolecularControl
• CompositeReverseIterator : BALL::Composite
• composites_ : BALL::VIEW::ColorProcessor , BALL::VIEW::Representation
• composites_locked_ : BALL::VIEW::MainControl
• composites_locked_mutex_ : BALL::VIEW::MainControl
• compositesAreLocked() : BALL::VIEW::MainControl
• CompositeSet : BALL::VIEW::ColorProcessor
• compress_output_ : BALL::GenericMolFile
• compute() : BALL::AtomInformationContent , BALL::Descriptor , BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_ , BALL::NumberOfHydrogenBondAcceptors , BALL::NumberOfHydrogenBondDonors , BALL::NumberOfHydrophobicAtoms , BALL::PoseClustering , BALL::ReducedSurface , BALL::RelHydrophobicVdWSurface , BALL::RelNegativePolarVdWSurface , BALL::RelNegativeVdWSurface , BALL::RelNumberOfRotatableBonds , BALL::RelNumberOfRotatableSingleBonds , BALL::RelPolarVdWSurface , BALL::RelPositivePolarVdWSurface , BALL::RelPositiveVdWSurface , BALL::SolventAccessibleSurface , BALL::SolventExcludedSurface , BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound > , BALL::TriangulatedSAS , BALL::TriangulatedSES , BALL::VertexAdjacency , BALL::VertexAdjacencyEquality , BALL::ZagrebIndex
• compute_() : BALL::SecondaryStructureProcessor
• COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
• compute_also_connectivity_ : BALL::AssignBondOrderProcessor
• COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
• compute_also_non_optimal_solutions_ : BALL::AssignBondOrderProcessor
• COMPUTE_AREA : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
• compute_shifts_ : BALL::ShiftModel1D , BALL::ShiftModel2D
• COMPUTE_SURFACE : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
• COMPUTE_SURFACE_MAP : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
• COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
• COMPUTE_VOLUME : BALL::NumericalSAS::Default , BALL::NumericalSAS::Option
• computeAdjacencyMatrix_() : BALL::SDGenerator
• computeAllDescriptors() : BALL::ConnectivityBase , BALL::PartialChargeBase , BALL::SimpleBase , BALL::SurfaceBase
• computeAllMoments() : BALL::Spectrum< DataT, PeakT, PositionT >
• computeAngularDemand_() : BALL::SDGenerator
• computeAngularSeparation_() : BALL::SDGenerator
• computeBitSize() : BALL::VIEW::PixelFormat
• computeBondOrders() : BALL::VIEW::Scene
• computeByteSize() : BALL::VIEW::PixelFormat
• computeCenterOfMasses_() : BALL::PoseClustering
• computeCFS_() : BALL::SDGenerator
• computeCompleteLinkageRMSD() : BALL::PoseClustering
• computeCoreCFS_() : BALL::SDGenerator
• computeCovarianceMatrix() : BALL::PoseClustering
• computeDefaultPressed() : BALL::VIEW::StageSettings
• computeDistance() : BALL::PeptideCapProcessor
• computeForgetBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• computeHuInvariants() : BALL::Spectrum< DataT, PeakT, PositionT >
• computeHuInvariantsDifferences() : BALL::Spectrum< DataT, PeakT, PositionT >
• computeIntroduceBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• computeIsoContourSurface() : BALL::VIEW::RegularData3DController
• computeJoinBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• computeLeafIntroduceBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• computeNextSolution() : BALL::AssignBondOrderProcessor , BALL::AStarBondOrderStrategy , BALL::BondOrderAssignmentStrategy , BALL::BranchAndBoundBondOrderStrategy , BALL::FPTBondOrderStrategy , BALL::ILPBondOrderStrategy , BALL::KGreedyBondOrderStrategy , BALL::VIEW::AssignBondOrderResultsDialog
• computeProperties_() : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_
• computeRootBag() : BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_
• computeSettingsFromModelDistance() : BALL::VIEW::StereoSettingsDialog
• computeShelleyPriorities_() : BALL::SDGenerator
• computeSize() : BALL::VIEW::FrameBufferFormat
• computeSphereTesselation_() : BALL::NumericalSAS
• computeTilingSetup_() : BALL::VIEW::TilingRenderer
• computeTopology() : BALL::TContourSurface< T >::Cube
• computeTransformation() : BALL::RMSDMinimizer
• computeTreeWidth() : BALL::TreeWidth< UndirectedGraph >
• computeTriangles() : BALL::TContourSurface< T >
• computeVirtualHydrogens_() : BALL::AssignBondOrderProcessor
• computeWardDistance_() : BALL::PoseClustering
• computing_data_ : BALL::FPTBondOrderStrategy
• ComputingData_() : BALL::FPTBondOrderStrategy::ComputingData_
• concentration_max : BALL::NMRStarFile::Sample::Component
• concentration_min : BALL::NMRStarFile::Sample::Component
• concentration_value : BALL::NMRStarFile::Sample::Component
• condition : BALL::NMRStarFile::NMRAtomDataSet
• conect_atoms : BALL::PDB::Structure
• conect_records : BALL::PDB::BookKeeping
• conf_ids_ : BALL::FlexibleMolecule
• config : BALL::FPTBondOrderStrategy::BackTrackingState_
• ConfigDialog() : BALL::VIEW::ConfigDialog
• ConfigurationReadingError() : BALL::QSAR::Exception::ConfigurationReadingError
• Conformation() : BALL::Conformation , BALL::ConformationSet
• conformation : BALL::PLP::NonBondedPairData
• CONFORMATION_SCALE : BALL::ScoringFunction::Default , BALL::ScoringFunction::Option
• conformation_scale_ : BALL::ScoringFunction
• conformation_set_ : BALL::DockResult , BALL::VIEW::DockingFinishedMessage
• conformations : BALL::FlexibleMolecule
• ConformationSet() : BALL::ConformationSet
• ConjugateGradientMinimizer() : BALL::ConjugateGradientMinimizer
• connect() : BALL::Client , BALL::DisulfidBondProcessor
• connect_to : BALL::FragmentDB::BuildBondsProcessor::Connection
• connectChilds_() : BALL::VIEW::PTEDialog
• CONNECTED : BALL::SmartsParser::SPAtom
• connected_stream_ : BALL::TCPServer
• connectedComponents() : BALL::BinaryFingerprintMethods
• ConnectedComponentsProcessor() : BALL::ConnectedComponentsProcessor
• ConnectedToPredicate() : BALL::ConnectedToPredicate
• ConnectionList : BALL::FragmentDB::BuildBondsProcessor , BALL::SmilesParser
• ConnectionObject() : BALL::VIEW::ConnectionObject
• connectionRequested() : BALL::TCPServer
• connections : BALL::StaticLigandFragment
• connections_ : BALL::FragmentDB::BuildBondsProcessor , BALL::SmilesParser
• connectivity : BALL::GAFFTypeProcessor::TypeDefinition
• CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::Default , BALL::AssignBondOrderProcessor::Option
• ConnectivityBase() : BALL::ConnectivityBase
• connectTo() : BALL::DockProblem
• CONNOLLY : BALL::GeometricFit
• CONST : BALL::SLICKEnergy::Default , BALL::SLICKEnergy::Option , BALL::SLICKScore::Default , BALL::SLICKScore::Option
• const_argument_pointer : BALL::UnaryFunctor< ArgumentType, ResultType >
• const_argument_reference : BALL::UnaryFunctor< ArgumentType, ResultType >
• const_first_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• const_first_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• const_iterator : BALL::FPTBondOrderStrategy::DPTable_ , BALL::HashSet< Key > , BALL::List< Value > , BALL::PDBRecords , BALL::ResidueRotamerSet , BALL::String , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• const_penalty_ : BALL::ILPBondOrderStrategy
• const_pointer : BALL::HashSet< Key > , BALL::String , BALL::VIEW::CompositeManager
• const_reference : BALL::HashSet< Key > , BALL::PDBRecords , BALL::String , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::CompositeManager
• const_reverse_iterator : BALL::PDBRecords , BALL::String
• const_second_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• const_second_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• CONSTANT : BALL::UhligCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Option
• constant_ : BALL::MutableConstant< DataType >
• constants_ : BALL::ParsedFunction< arg >
• ConstAtomPtrMap : BALL::MolecularGraph
• ConstBidirectionalIterator() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
• ConstBondPtrMap : BALL::MolecularGraph
• ConstBoxIterator : BALL::HashGrid3< Item > , BALL::HashGridBox3< Item >
• ConstContactFaceIterator : BALL::SolventExcludedSurface
• ConstDataIterator : BALL::HashGridBox3< Item >
• ConstEdgeIterator : BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::SolventExcludedSurface , BALL::TriangulatedSurface
• ConstFaceIterator : BALL::GraphVertex< Vertex, Edge, Face >
• ConstForwardIterator() : BALL::ConstForwardIterator< Container, DataType, Position, Traits >
• ConstIterator : BALL::AtomVector , BALL::ConnectedToPredicate::CTPNode , BALL::EdgeItem< Node, Edge > , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::ExpressionParser::SyntaxTree , BALL::Gradient , BALL::HashMap< Key, T > , BALL::HashSet< Key > , BALL::List< Value > , BALL::NodeItem< Node, Edge > , BALL::PDBRecords , BALL::PeakList< PT > , BALL::PyColorRGBAVector , BALL::PyCompositeList , BALL::PyDatasetVector , BALL::PyIndexList , BALL::ResidueRotamerSet , BALL::ResourceEntry , BALL::ResourceFile , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::StringHashMap< Value > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• ConstOrientationIterator : BALL::SASFace
• ConstPointIterator : BALL::TriangulatedSurface
• Constraint() : BALL::Constraint
• constraints : BALL::ScoringFunction
• ConstRandomAccessIterator() : BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >
• ConstReference : BALL::PDBRecords
• ConstReverseIterator : BALL::Gradient , BALL::PDBRecords
• construct() : BALL::Peptides::PeptideBuilder
• constructExpressionTree_() : BALL::Expression
• constructRingSystem_() : BALL::SDGenerator
• ConstSingularEdgeIterator : BALL::SolventExcludedSurface
• ConstSphericFaceIterator : BALL::SolventExcludedSurface
• ConstToricFaceIterator : BALL::SolventExcludedSurface
• ConstTriangleIterator : BALL::TriangulatedSurface
• ConstVertexIterator : BALL::GraphFace< Vertex, Edge, Face > , BALL::SolventExcludedSurface
• consumed_valences : BALL::FPTBondOrderStrategy::DPConfig_
• contact_faces_ : BALL::SolventExcludedSurface
• ContactFaceIterator : BALL::SolventExcludedSurface
• container_ : BALL::Enumerator< Container, SiteIterator, Variant > , BALL::VIEW::DockWidget
• ContainerConstPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• ContainerPointer : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• ContainerType : BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
• containsAtomChilds_() : BALL::MOL2File
• containsSelection() : BALL::Composite
• contentsDragEnterEvent() : BALL::VIEW::DragLogView , BALL::VIEW::PyWidget
• contentsDragLeaveEvent() : BALL::VIEW::DragLogView
• contentsDropEvent() : BALL::VIEW::DragLogView , BALL::VIEW::PyWidget
• ContentType : BALL::JCAMPFile
• contex_mutex_ : BALL::VIEW::GLRenderWindow
• context_composite_ : BALL::VIEW::MolecularControl
• context_item_ : BALL::VIEW::GenericControl , BALL::VIEW::MolecularControl
• context_menu_ : BALL::VIEW::GeometricControl , BALL::VIEW::MolecularControl
• context_menu_actions_ : BALL::VIEW::GeometricControl
• context_plane_ : BALL::VIEW::GeometricControl
• context_representation_ : BALL::VIEW::GeometricControl
• contextMenuEvent() : BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget
• continuation : BALL::PDB::RecordAUTHOR , BALL::PDB::RecordCAVEAT , BALL::PDB::RecordCOMPND , BALL::PDB::RecordEXPDTA , BALL::PDB::RecordHETNAM , BALL::PDB::RecordHETSYN , BALL::PDB::RecordKEYWDS , BALL::PDB::RecordOBSLTE , BALL::PDB::RecordREVDAT , BALL::PDB::RecordSOURCE , BALL::PDB::RecordSPRSDE , BALL::PDB::RecordTITLE
• continuation_number : BALL::PDB::RecordFORMUL
• CONTINUE : BALL::Processor
• CONTINUED_LINE : BALL::KCFFile
• ContourSurfaceDialog() : BALL::VIEW::ContourSurfaceDialog
• contractEdge() : BALL::TreeWidthImplementation< EditableGraph >::MinorMinWidthReducer
• control_ : BALL::VIEW::DatasetController
• control_selection_ : BALL::VIEW::MainControl
• CONTROL_WINDOW : BALL::VIEW::Scene
• controller_ : BALL::VIEW::GridVisualizationDialog
• controllers_ : BALL::VIEW::DatasetControl
• ControlSelectionMessage() : BALL::VIEW::ControlSelectionMessage
• CONV_ITERATIONS : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• CONV_START : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• conv_start_ : BALL::GeneticAlgorithm
• CONV_VALUE : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• conventions_ : BALL::Peptides::NameConverter
• conversion_table_ : BALL::Peptides::NameConverter
• convert_ : BALL::Rescoring
• convertBrick_() : BALL::DSN6File
• convertCameraToSceneCoordinates() : BALL::VIEW::Camera
• convertMaterial() : BALL::VIEW::RTfactRenderer
• convertName() : BALL::Peptides::NameConverter
• convertObject() : BALL::MoleculeObjectCreator , BALL::ObjectCreator
• convertSnaphots2Transformations() : BALL::PoseClustering
• convertTime() : BALL::ScoringFunction
• convertToFullAssignment() : BALL::PartialBondOrderAssignment
• convertToGaussian() : BALL::Spectrum< DataT, PeakT, PositionT >
• convertToLorentzian() : BALL::Spectrum< DataT, PeakT, PositionT >
• convertToRegularData3DGrids() : BALL::ScoreGridSet
• convertTransformations2Snaphots() : BALL::PoseClustering
• coordinate_transformation_records : BALL::PDB::BookKeeping
• coordinateSystemEnabled() : BALL::VIEW::Stage
• CoordinateType : BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• COPPER : BALL::Element
• copy() : BALL::File , BALL::String , BALL::TriangulatedSurface , BALL::VIEW::MolecularControl
• copy_id_ : BALL::VIEW::MolecularControl
• copy_list_ : BALL::VIEW::MolecularControl
• copyAdvancedParametersToOptions() : BALL::CommandlineParser
• copyData() : BALL::QSAR::Model
• copyDescriptorIDs() : BALL::QSAR::Model
• copyTo() : BALL::File
• cor_threshold : BALL::QSAR::FeatureSelectionConfiguration
• CORD_ : BALL::DCDFile
• CORE : BALL::RingAnalyser
• CORE_CHAIN : BALL::SDGenerator
• corr_par_ : BALL::ShiftedLVMMMinimizer
• correct_CA_shifts_ : BALL::HaighMallionShiftProcessor
• correctASUPositions_() : BALL::CrystalGenerator
• CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::Default , BALL::ShiftedLVMMMinimizer::Option
• CorrectionParameter : BALL::ShiftedLVMMMinimizer
• CosineTorsion() : BALL::CosineTorsion
• COSY_CH : BALL::ShiftModel2D
• COSY_HH : BALL::ShiftModel2D
• COULOMB : BALL::FDPB::Boundary
• count() : BALL::Composite
• count_items_action_ : BALL::VIEW::MolecularControl
• countAtomContainers() : BALL::AtomContainer
• countAtoms() : BALL::AtomContainer , BALL::System
• countBondOrders() : BALL::AddHydrogenProcessor
• countBonds() : BALL::Atom , BALL::AtomContainer
• countChains() : BALL::Protein , BALL::System
• countChildren() : BALL::ResourceEntry
• countComponents() : BALL::ForceField
• countConformations() : BALL::DockResultFile
• countCovalentBonds() : BALL::ScoringFunction
• countDescendants() : BALL::Composite , BALL::ResourceEntry
• countDirectories() : BALL::Directory
• countEdges() : BALL::SmartsParser::SPNode
• countFields() : BALL::String
• countFieldsQuoted() : BALL::String
• countFiles() : BALL::Directory
• countFragments() : BALL::System
• countFragments_() : BALL::StructureMapper
• countInstances_() : BALL::Embeddable
• countInterBonds() : BALL::AtomContainer
• countIntraBonds() : BALL::AtomContainer
• countItems() : BALL::Directory , BALL::VIEW::MolecularControl
• countMolecules() : BALL::System
• countNamedProperties() : BALL::PropertyManager
• countNeighboringReceptorAtoms() : BALL::ScoringFunction
• countNonEmptyBoxes() : BALL::HashGrid3< Item >
• countNucleicAcids() : BALL::System
• countNucleotides() : BALL::NucleicAcid , BALL::System
• countPDBAtoms() : BALL::Chain , BALL::Protein , BALL::Residue , BALL::SecondaryStructure
• countProperties() : BALL::PropertyManager , BALL::SmartsParser::SPAtom
• countProteins() : BALL::System
• countRealValences() : BALL::SmartsParser::SPAtom , BALL::SmilesParser::SPAtom
• countRecord() : BALL::PDBFile
• countRecordFields() : BALL::PDBFile
• countRecords() : BALL::PDBFile
• countResidues() : BALL::Chain , BALL::Protein , BALL::SecondaryStructure , BALL::System
• counts_format_ : BALL::MOLFile
• countSecondaryStructures() : BALL::Chain , BALL::Protein , BALL::System
• countSubexpressions() : BALL::RegularExpression
• countValue() : BALL::BitVector
• countVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
• covariance_matrix_ : BALL::PoseClustering
• Cp_ref : BALL::CharmmEEF1::Values
• Cp_ref_ : BALL::CharmmEEF1
• Cr : BALL::Element
• crd : BALL::MMFF94AtomType
• create() : BALL::Directory , BALL::Factory< T > , BALL::QSAR::ModelFactory< T > , BALL::QSAR::RegistryEntry , BALL::String
• create6Ring_() : BALL::VIEW::AddCartoonModel
• create_button_ : BALL::VIEW::DisplayProperties
• create_coordinate_system_ : BALL::VIEW::Scene
• CREATE_DISTANCE_GRID : BALL::VIEW::MolecularTaskMessage
• CREATE_INTERACTION_FILE : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option
• CREATE_INTERACTIONS_FILE : BALL::Lipophilic::Default , BALL::Lipophilic::Option
• create_methods_ : BALL::Expression , BALL::PersistenceManager
• create_mutex_ : BALL::VIEW::UIOperationMode
• create_representations_for_new_molecules_ : BALL::VIEW::DisplayProperties
• create_XHTML_ : BALL::VIEW::XML3DRenderer
• createActions_() : BALL::VIEW::EditMode
• createAllLigandNonBondedPairs() : BALL::ScoringFunction
• createAtom() : BALL::SmartsParser , BALL::SmilesParser
• createAtomGrid() : BALL::VIEW::ColorProcessor
• createBond() : BALL::Atom , BALL::Bond , BALL::SmilesParser
• createBond_() : BALL::VIEW::EditMode
• createBonds() : BALL::SmilesParser
• createBoundaryMolecule() : BALL::ReferenceArea
• createBoxes_() : BALL::VIEW::GLRenderer
• createColorProcessor() : BALL::VIEW::ColoringSettingsDialog
• createCombination() : BALL::Enumerator< Container, SiteIterator, Variant >
• createContourLine() : BALL::TContourLine< T >
• createCoordinateSystem() : BALL::VIEW::Scene
• createCoordinateSystem_() : BALL::VIEW::Scene
• createCoordinateSystemAtOrigin() : BALL::VIEW::Scene
• created_temp_filenames_ : BALL::File
• createDisk() : BALL::TriangulatedSurface
• createDotBox_() : BALL::VIEW::GLRenderer
• createDottedSphere_() : BALL::VIEW::GLRenderer
• createDoubleRing_() : BALL::VIEW::AddCartoonModel
• createEditor() : BALL::VIEW::ComboBoxDelegate
• createEditorWidget_() : BALL::VIEW::PropertyEditor
• createEntries() : BALL::VIEW::AssignBondOrderResultsDialog
• createEvaluationMethod() : BALL::VIEW::DockingController
• createFieldLine_() : BALL::VIEW::FieldLineCreator
• createFPSInfo_() : BALL::VIEW::Scene
• createGeometricObjects() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AddSurfaceModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::LabelModel , BALL::VIEW::ModelProcessor
• createGridFromCameraDistance() : BALL::VIEW::MolecularStructure
• createGridFromDistance() : BALL::VIEW::MolecularStructure
• createHelix_() : BALL::VIEW::AddCartoonModel
• createHistogramGrid() : BALL::VIEW::RegularData3DController
• createHotkey() : BALL::VIEW::Hotkey
• createKernel1() : BALL::QSAR::ModelFactory< T > , BALL::QSAR::RegistryEntry
• createKernel2() : BALL::QSAR::ModelFactory< T > , BALL::QSAR::RegistryEntry
• createLigandNonbondedPairVector() : BALL::ScoringFunction
• createLineBox_() : BALL::VIEW::GLRenderer
• createLines() : BALL::VIEW::FieldLineCreator
• createMap() : BALL::VIEW::ColorMap
• createMapJet() : BALL::VIEW::ColorMap
• createMapping() : BALL::NMRStarFile::BALLToBMRBMapper
• createMenuEntries() : BALL::VIEW::DatasetController , BALL::VIEW::DockResultController , BALL::VIEW::RaytraceableGridController , BALL::VIEW::RegularData3DController , BALL::VIEW::TrajectoryController , BALL::VIEW::VectorGridController
• createMenuHelpEntry_() : BALL::VIEW::PyWidget
• CreateMethod : BALL::PersistenceManager , BALL::ShiftModel
• CreateMethodMap : BALL::ShiftModel
• createModel_() : BALL::VIEW::AddBackboneModel , BALL::VIEW::AddCartoonModel
• createModelProcessor() : BALL::VIEW::ModelSettingsDialog
• createModularWidget() : BALL::VIEW::ModularWidgetPlugin
• createModule_() : BALL::ShiftModel
• createMolecule_() : BALL::VIEW::Scene
• createMultipleLabels_() : BALL::VIEW::LabelDialog
• createNewBool_() : BALL::VIEW::PropertyEditor
• createNewClippingPlane() : BALL::VIEW::GeometricControl
• createNewDatabase() : BALL::MolDB
• createNewDouble_() : BALL::VIEW::PropertyEditor
• createNewFloat_() : BALL::VIEW::PropertyEditor
• createNewInt_() : BALL::VIEW::PropertyEditor
• createNewMolecule() : BALL::VIEW::Scene
• createNewString_() : BALL::VIEW::PropertyEditor
• createNewUInt_() : BALL::VIEW::PropertyEditor
• createNonbondedPairVector() : BALL::ScoringFunction
• createObject() : BALL::PersistenceManager
• createOneLabel_() : BALL::VIEW::LabelDialog
• createPeak_() : BALL::ShiftModel2D
• createPlot() : BALL::VIEW::RegularData1DWidget , BALL::VIEW::RegularData2DWidget
• createPopupMenu() : BALL::VIEW::MainControl
• createRaytraceableGrid() : BALL::VIEW::RegularData3DController
• createRepresentation() : BALL::VIEW::DisplayProperties , BALL::VIEW::MolecularControl , BALL::VIEW::RepresentationManager
• createRepresentation_() : BALL::VIEW::MolecularControl
• CreateRepresentationMessage() : BALL::VIEW::CreateRepresentationMessage
• createRepresentationMode() : BALL::VIEW::DisplayProperties
• createResidue_() : BALL::Peptides::PeptideBuilder
• createRibbon_() : BALL::VIEW::AddBackboneModel
• createScript_() : BALL::VIEW::PyWidget
• createSimpleNucleicAcid_() : BALL::VIEW::AddCartoonModel
• createSolidBox_() : BALL::VIEW::GLRenderer
• CreateSpectrumProcessor() : BALL::CreateSpectrumProcessor
• createSphere() : BALL::VIEW::RegularData3DController
• createSpheres_() : BALL::VIEW::GLRenderer
• createSphereTemplate_() : BALL::VIEW::XML3DRenderer
• createStaticLigandFragments() : BALL::ScoringFunction
• createStrand_() : BALL::VIEW::AddCartoonModel
• createSubcategory() : BALL::Options
• createTemporaryFilename() : BALL::File
• createTexture() : BALL::VIEW::GLRenderWindow
• createTextureFromGrid() : BALL::VIEW::GLRenderer
• createTrivialMapping() : BALL::NMRStarFile::BALLToBMRBMapper
• createTube() : BALL::TriangulatedSurface
• createTube_() : BALL::VIEW::AddBackboneModel
• createTubeHelix_() : BALL::VIEW::AddCartoonModel
• createTubes_() : BALL::VIEW::GLRenderer
• createTubeTransform_() : BALL::VIEW::XML3DRenderer
• createVectorGrid() : BALL::VIEW::RegularData3DController
• createVoid() : BALL::Factory< T >
• createWatsonCrickModel_() : BALL::VIEW::AddCartoonModel
• createXHTMLFooter() : BALL::VIEW::XML3DRenderer
• createXHTMLHeader() : BALL::VIEW::XML3DRenderer
• creating_representations_ : BALL::VIEW::GeometricControl
• CreationMethod : BALL::Expression
• crossValidation() : BALL::QSAR::ClassificationValidation , BALL::QSAR::RegressionValidation , BALL::QSAR::Validation
• crystal_dimension_ : BALL::DSN6File
• CrystalGenerator() : BALL::CrystalGenerator
• CrystalInfo() : BALL::CrystalInfo
• Cs : BALL::Element
• csv_compound_labels : BALL::QSAR::InputConfiguration
• csv_desc_labels : BALL::QSAR::InputConfiguration
• csv_file : BALL::QSAR::InputConfiguration
• csv_no_response : BALL::QSAR::InputConfiguration
• csv_separator : BALL::QSAR::InputConfiguration
• CTPNode() : BALL::ConnectedToPredicate::CTPNode
• Cu : BALL::Element
• Cube() : BALL::TContourSurface< T >::Cube
• CubicFunction() : BALL::CubicFunction< Function, DataType >
• CubicSpline1D() : BALL::CubicSpline1D
• CubicSpline2D() : BALL::CubicSpline2D
• CUDAError() : BALL::Exception::CUDAError
• CUPRUM : BALL::Element
• CURIUM : BALL::Element
• curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
• curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
• current_aps_type : BALL::GAFFCESParser::State
• current_aromatic_system_ : BALL::Kekuliser
• current_atom : BALL::EmpiricalHSShiftProcessor::PropertiesForShift_ , BALL::GAMESSLogFile
• current_atom_ : BALL::VIEW::Scene
• current_block_ : BALL::GAMESSDatFile
• current_bond_ : BALL::VIEW::Scene
• current_chain : BALL::PDB::AdditionalAtomInfo
• current_chain_ : BALL::PDBFile
• current_coefficient_line : BALL::GAMESSLogFile
• current_const_atom_ : BALL::PDBFile
• current_const_chain_ : BALL::PDBFile
• current_const_protein_ : BALL::PDBFile
• current_const_residue_ : BALL::PDBFile
• current_datablock_ : BALL::CIFFile
• CURRENT_DIRECTORY : BALL::FileSystem
• current_energy_ : BALL::EnergyMinimizer
• current_grad_ : BALL::EnergyMinimizer
• current_image_ : BALL::VIEW::GLOffscreenTarget
• current_indent_ : BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• current_item_ : BALL::CIFFile
• current_light_ : BALL::VIEW::LightSettings
• current_line_ : BALL::VIEW::PyWidget
• current_mode_ : BALL::VIEW::InteractionModeManager
• current_model_ : BALL::PDBFile
• current_molecule_ : BALL::GAFFTypeProcessor
• current_parser : BALL::CIFFile::State , BALL::ExpressionParser::State , BALL::GAFFCESParser::State , BALL::GAMESSDatFile::State , BALL::GAMESSLogFile::State , BALL::SmartsParser::State , BALL::SmilesParser::State
• current_parser_ : BALL::ExpressionParser , BALL::SmartsParser , BALL::SmilesParser
• current_PDB_atom_ : BALL::PDBFile
• current_penalty_ : BALL::Kekuliser
• current_position_ : BALL::TContourSurface< T >::Cube
• current_predicate : BALL::GAFFCESParser
• current_protein_ : BALL::PDBFile
• current_record_ : BALL::PDBFile
• current_record_type_ : BALL::PDBFile
• current_reply_ : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
• current_residue : BALL::PDB::AdditionalAtomInfo
• current_residue_ : BALL::PDBFile , BALL::VIEW::MolecularControl
• current_root_predicate : BALL::GAFFCESParser
• current_round_ : BALL::GeometricFit
• current_saveframe_ : BALL::CIFFile
• current_script_ : BALL::VIEW::PyWidget
• current_set : BALL::GAMESSLogFile
• current_set_ : BALL::PoseClustering
• current_snapshot_ : BALL::DCDFile , BALL::SnapShotManager
• current_solution_ : BALL::KGreedyBondOrderStrategy
• current_sphere_number_ : BALL::VIEW::XML3DRenderer
• current_state_ : BALL::FPTBondOrderStrategy::DPBackTracking_
• current_temperature_ : BALL::MolecularDynamics
• CURRENT_TIME : BALL::MolecularDynamics::Default , BALL::MolecularDynamics::Option
• current_time_ : BALL::MolecularDynamics
• current_tube_number_ : BALL::VIEW::XML3DRenderer
• currentEntry() : BALL::VIEW::Preferences
• currentPage() : BALL::VIEW::Preferences
• currentStackPage() : BALL::VIEW::PreferencesEntry
• custom_color_ : BALL::VIEW::DisplayProperties , BALL::VIEW::LabelDialog
• custom_model_information_ : BALL::VIEW::Representation
• CustomColorProcessor() : BALL::VIEW::CustomColorProcessor
• customColorTransparencyChanged() : BALL::VIEW::ModifyRepresentationDialog
• customEvent() : BALL::VIEW::GLRenderWindow , BALL::VIEW::Scene
• cut() : BALL::TriangulatedSurface , BALL::VIEW::MolecularControl
• cut_hash_map_ : BALL::TContourSurface< T >
• cut_id_ : BALL::VIEW::MolecularControl
• cut_off2_ : BALL::EFShiftProcessor , BALL::HaighMallionShiftProcessor
• cutlo_ : BALL::EnergyMinimizer
• cutoffSearch() : BALL::BinaryFingerprintMethods
• cutPlaneInstances : BALL::VIEW::RTfactRenderer::RTfactData
• cutPlaneMeshes : BALL::VIEW::RTfactRenderer::RTfactData
• cutPlanes : BALL::VIEW::RTfactRenderer::RTfactData
• cutPlaneShader : BALL::VIEW::RTfactRenderer::RTfactData
• CW_AL : BALL::SmartsParser
• CW_AL_OR_UNSPECIFIED : BALL::SmartsParser
• CW_DEFAULT : BALL::SmartsParser
• CW_DEFAULT_OR_UNSPECIFIED : BALL::SmartsParser
• CW_OH : BALL::SmartsParser
• CW_OH_OR_UNSPECIFIED : BALL::SmartsParser
• CW_SP : BALL::SmartsParser
• CW_SP_OR_UNSPECIFIED : BALL::SmartsParser
• CW_TB : BALL::SmartsParser
• CW_TB_OR_UNSPECIFIED : BALL::SmartsParser
• CW_TH : BALL::SmartsParser
• CW_TH_OR_UNSPECIFIED : BALL::SmartsParser
• CX_DISTANCE_UPPER : BALL::CHPI::Default , BALL::CHPI::Option , BALL::CHPISlick::Default , BALL::CHPISlick::Option
• cys_pressed() : BALL::VIEW::PeptideDialog