Here is a list of all class members with links to the classes they belong to:

- s -

• S : BALL::Element
• s : boost::hash< RTpieCpp::InstanceHandle >::conv , boost::hash< RTpieCpp::MeshHandle >::conv
• salt_bridge_atom : BALL::PDB::RecordCONECT
• saltbridges : BALL::PDB::Structure::ConectAtomList , BALL::PDB::Structure
• SAMARIUM : BALL::Element
• same_energy_counter_ : BALL::EnergyMinimizer
• Sample() : BALL::NMRStarFile::Sample
• SampleCondition() : BALL::NMRStarFile::SampleCondition
• samples : BALL::NMRStarFile::NMRAtomDataSet
• SAMPLES : BALL::Pair6_12RDFIntegrator::Default , BALL::Pair6_12RDFIntegrator::Option , BALL::PairExpRDFIntegrator::Default , BALL::PairExpRDFIntegrator::Option
• sampling_rate_ : BALL::CCP4File , BALL::DSN6File
• sas_ : BALL::TriangulatedSAS
• SAS_grid : BALL::FDPB
• SASEdge : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex
• SASFace : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex
• SASTriangulator : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASTriangulator , BALL::SASVertex , BALL::SolventAccessibleSurface , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::TriangulatedSAS
• SASVertex : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex
• saturate() : BALL::StructurePreparer
• saturateWithHydrogens() : BALL::VIEW::Scene
• save() : BALL::ResourceFile
• save_file : BALL::VIEW::TestFramework
• save_id_ : BALL::VIEW::MolecularFileDialog
• save_images_ : BALL::VIEW::MDSimulationThread
• SAVE_ONLY_SUMS : BALL::MolecularInteractions
• save_project_action_ : BALL::VIEW::MainControl
• saveAs() : BALL::ResourceFile
• saveBALLViewProjectFile() : BALL::VIEW::MainControl
• saveClassInformationToFile() : BALL::QSAR::ClassificationModel
• saved_position_ : BALL::AtomVector
• saveDescriptorInformationToFile() : BALL::QSAR::Model , BALL::QSAR::RegressionModel
• saveDockTrajectory() : BALL::VIEW::DockResultController
• saveFile() : BALL::VIEW::TestFramework
• saveframe : BALL::CIFFile::Datacontent
• saveframe_categories : BALL::CIFFile::Datablock
• saveframe_names : BALL::CIFFile::Datablock
• saveGAMESSInput() : BALL::VIEW::RunGAMESSDialog
• saveGridSetsToFile() : BALL::GridBasedScoring
• saveKernelParametersToFile() : BALL::QSAR::KernelModel
• saveModel() : BALL::Rescoring
• saveModelParametersToFile() : BALL::QSAR::Model
• savePositions() : BALL::AtomVector
• saveResponseTransformationToFile() : BALL::QSAR::Model
• saveScript() : BALL::VIEW::PyWidget
• saveSettingsToLight_() : BALL::VIEW::LightSettings
• saveSurface() : BALL::VIEW::GeometricControl
• saveToFile() : BALL::QSAR::ALLModel , BALL::QSAR::ClassificationValidation , BALL::QSAR::KernelModel , BALL::QSAR::LDAModel , BALL::QSAR::LogitModel , BALL::QSAR::Model , BALL::QSAR::NBModel , BALL::QSAR::QSARData , BALL::QSAR::RegressionModel , BALL::QSAR::RegressionValidation , BALL::QSAR::SNBModel , BALL::QSAR::Validation , BALL::ScoreGridSet
• saveTrainingResult() : BALL::QSAR::KernelModel
• Sb : BALL::Element
• sbmb : BALL::MMFF94AtomType , BALL::MMFF94StretchBend::Stretch
• sbmb_exists : BALL::MMFF94StretchParameters::BondData
• sbtijk : BALL::MMFF94StretchBend::StretchBend
• Sc : BALL::Element
• scalarProduct() : BALL::QSAR::Statistics
• scale() : BALL::PeakList< PT > , BALL::TMatrix4x4< T >
• scale_() : BALL::VIEW::GLRenderer
• scaleAllDescriptors() : BALL::QSAR::QSARData
• scaleScore() : BALL::ScoringComponent
• scaleVector3_() : BALL::VIEW::GLRenderer
• scaling() : BALL::QSAR::Statistics
• scaling_ : BALL::VIEW::ForceModel
• SCALING_ELECTROSTATIC_1_4 : BALL::AmberFF::Default , BALL::AmberFF::Option , BALL::CharmmFF::Default , BALL::CharmmFF::Option
• SCALING_VDW_1_4 : BALL::AmberFF::Default , BALL::AmberFF::Option , BALL::CharmmFF::Default , BALL::CharmmFF::Option
• scalingUsed : BALL::VIEW::VRMLRenderer
• SCANDIUM : BALL::Element
• Scene : BALL::VIEW::GLRenderer , BALL::VIEW::Scene
• scene_ : BALL::Mainframe , BALL::VIEW::AnimationThread , BALL::VIEW::InteractionMode , BALL::VIEW::InteractionModeManager , BALL::VIEW::LightSettings , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
• SceneMessage() : BALL::VIEW::SceneMessage
• SceneMessageType : BALL::VIEW::SceneMessage
• scheduleDelete_() : BALL::VIEW::PropertyEditor
• scheduleDuplicate_() : BALL::VIEW::PropertyEditor
• score_ : BALL::ScoringComponent , BALL::ScoringFunction
• score_contribution_names : BALL::ScoringOptimizer::Result
• score_contributions : BALL::ScoringOptimizer::Result
• SCOREGRID_INTERPOLATION : BALL::GridBasedScoring::Default , BALL::GridBasedScoring::Option
• scoregrid_interpolation_ : BALL::GridBasedScoring
• SCOREGRID_RESOLUTION : BALL::GridBasedScoring::Default , BALL::GridBasedScoring::Option
• scoregrid_resolution_ : BALL::GridBasedScoring
• ScoreGridSet : BALL::GridBasedScoring , BALL::ScoreGridSet
• scores_ : BALL::DockResult::Scoring_
• Scoring_() : BALL::DockResult::Scoring_
• scoring_components_ : BALL::ScoringFunction
• scoring_function_ : BALL::Constraint , BALL::DockingAlgorithm , BALL::DockProblem , BALL::GridAnalysis , BALL::Rescoring , BALL::ScoringComponent
• SCORING_TOLERANCE : BALL::AromaticRingStacking::Default , BALL::AromaticRingStacking::Option
• SCORING_TYPE : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option , BALL::IMGDock::Default , BALL::IMGDock::Option
• scoring_type_ : BALL::DockingAlgorithm
• scoringAdvancedPressed() : BALL::VIEW::DockDialog
• ScoringBaseFunction() : BALL::ScoringBaseFunction
• scoringClicked() : BALL::VIEW::DockResultDialog
• ScoringComponent() : BALL::ScoringComponent
• scoringFuncChosen() : BALL::VIEW::DockDialog , BALL::VIEW::DockResultDialog
• ScoringFunction() : BALL::ScoringFunction , BALL::VIEW::DockingController
• ScoringOptimizer() : BALL::ScoringOptimizer
• scorings_ : BALL::DockResult
• screenCountChanged() : BALL::VIEW::StageSettings
• screenshot_nr_ : BALL::VIEW::Scene
• script_edit_ : BALL::VIEW::PyWidget
• script_mode_ : BALL::VIEW::PyWidget
• script_output_ : BALL::VIEW::PyWidget
• scriptDialog() : BALL::VIEW::PyWidget
• SCWRL_4_0 : BALL::SideChainPlacementProcessor::Method
• SCWRL_BINARY_PATH : BALL::SideChainPlacementProcessor::Default , BALL::SideChainPlacementProcessor::Option
• SCWRL_INPUT_FILE : BALL::SideChainPlacementProcessor::Default , BALL::SideChainPlacementProcessor::Option
• SCWRL_OUTPUT_FILE : BALL::SideChainPlacementProcessor::Default , BALL::SideChainPlacementProcessor::Option
• SCWRL_SEQUENCE_FILE : BALL::SideChainPlacementProcessor::Default , BALL::SideChainPlacementProcessor::Option
• SCWRLRotamerFile() : BALL::SCWRLRotamerFile
• sd_file : BALL::QSAR::InputConfiguration
• SD_FILE : BALL::VIEW::MolecularFileDialog
• sd_systems_ : BALL::VIEW::AssignBondOrderResultsDialog , BALL::VIEW::PubChemDialog
• SDFile() : BALL::SDFile
• SDGenerator() : BALL::SDGenerator
• SDWidget() : BALL::VIEW::SDWidget
• sdwidget_ : BALL::VIEW::AssignBondOrderResultsDialog
• Se : BALL::Element
• search() : BALL::LineBasedFile
• searchMoleculesByLogP() : BALL::MolDB
• searchMoleculesByMW() : BALL::MolDB
• searchMoleculesByUCK() : BALL::MolDB
• searchPattern() : BALL::StructureMapper
• searchSimilarMoleculesByFingerprint() : BALL::MolDB
• searchTextChanged() : BALL::VIEW::ShortcutDialog
• sec_axis_ : BALL::CCP4File
• sec_struct : BALL::PDB::Structure::AtomEntry
• sec_structs : BALL::PDB::Structure
• second : BALL::Quadruple< T1, T2, T3, T4 > , BALL::Triple< T1, T2, T3 >
• second_ : BALL::Addition< First, Second, DataType > , BALL::Bond , BALL::Division< First, Second, DataType > , BALL::Product< First, Second, DataType > , BALL::SmartsParser::SPEdge , BALL::Subtraction< First, Second, DataType >
• second_argument_pointer : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• second_argument_reference : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• second_argument_type : BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
• second_atom : BALL::MOLFile::BondStruct , BALL::PDB::RecordLINK , BALL::PDB::RecordSLTBRG
• second_atom_expressions_ : BALL::EFShiftProcessor
• second_edge_ : BALL::SmartsParser::SPEdge , BALL::SmartsParser::SPNode
• second_non_hydrogen_atom : BALL::PDB::RecordHYDBND
• SecondaryStructure() : BALL::SecondaryStructure
• SecondaryStructureColorProcessor() : BALL::VIEW::SecondaryStructureColorProcessor
• SecondaryStructureIteratorTraits() : BALL::SecondaryStructureIteratorTraits
• SecondaryStructureProcessor() : BALL::SecondaryStructureProcessor
• secondToFirst() : BALL::NucleotideMapping
• secs_ : BALL::PreciseTime
• SecStructList : BALL::PDBFile
• section_entries_ : BALL::ParameterSection
• section_index_ : BALL::INIFile
• section_name_ : BALL::ParameterSection
• SectionIterator : BALL::INIFile
• sections_ : BALL::INIFile
• seekAndWriteHeader() : BALL::DCDFile
• segment_ID : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordHETATM , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ
• select() : BALL::Composite , BALL::GeneticAlgorithm , BALL::Selectable , BALL::VIEW::MolecularControl
• select_action_ : BALL::VIEW::MolecularControl
• select_id_ : BALL::VIEW::MolecularControl
• Selectable() : BALL::Selectable
• selectAllModels() : BALL::PDBFile
• selectAllResultsForInput() : BALL::DockResultFile
• selectAltLocationIndicator() : BALL::PDBFile
• selectAtoms() : BALL::VIEW::GeometricControl
• selectBaseFunction() : BALL::ScoringComponent
• selectClipRepresentations() : BALL::VIEW::GeometricControl
• selectColoringMethod() : BALL::VIEW::DisplayProperties
• selectCompositeRecursive() : BALL::VIEW::MainControl
• selectComposites_() : BALL::VIEW::MainControl
• SELECTED : BALL::VIEW::DatasetMessage , BALL::VIEW::RepresentationMessage
• selected_ : BALL::GeneticAlgorithm , BALL::Selectable , BALL::VIEW::MolecularControl
• selected_atoms_ : BALL::Selector
• selected_color : BALL::VIEW::ModifyRepresentationDialog
• selected_coloring_method_ : BALL::VIEW::MolecularControl
• SELECTED_COMPOSITE : BALL::VIEW::CompositeMessage
• SELECTED_FF : BALL::VIEW::DockingController
• selected_model_ : BALL::PDBFile , BALL::VIEW::MolecularControl
• selectedForceField() : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog
• selectedRepresentation() : BALL::VIEW::GeometricControl
• selectFile_() : BALL::VIEW::DockDialog , BALL::VIEW::FDPBDialog
• selectFont() : BALL::VIEW::MainControlPreferences , BALL::VIEW::PythonSettings
• selectForceField() : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog
• selectHeavyAtoms() : BALL::StructurePreparer
• SELECTION : BALL::Composite
• selection_ : BALL::ResidueChecker , BALL::VIEW::MainControl
• selection_color_ : BALL::VIEW::ColorProcessor
• selection_enabled_ : BALL::ForceField
• selection_name : BALL::QSAR::FeatureSelectionConfiguration
• selectionChanged_() : BALL::VIEW::DockResultDialog
• selectionPressed_() : BALL::VIEW::Scene
• selectionPressedMoved_() : BALL::VIEW::PickingMode , BALL::VIEW::Scene
• selectItems() : BALL::VIEW::TreeWidget
• selectMode() : BALL::VIEW::DisplayProperties
• selectModel() : BALL::PDBFile , BALL::VIEW::DisplayProperties
• selectObjects_() : BALL::VIEW::PickingMode , BALL::VIEW::Scene
• Selector() : BALL::Selector
• selector_edit_ : BALL::VIEW::MolecularControl
• selectStat() : BALL::QSAR::ClassificationValidation , BALL::QSAR::FeatureSelection , BALL::QSAR::RegressionValidation , BALL::QSAR::Validation
• SELENIUM : BALL::Element
• send() : BALL::RingPerceptionProcessor::TNode_
• send_buffer : BALL::RingPerceptionProcessor::TNode_
• sendMessage() : BALL::VIEW::MainControl
• sendMessage_() : BALL::VIEW::BALLThread
• sendObject() : BALL::VIEW::ServerWidget::BALLViewServer
• sendOptions() : BALL::MPISupport
• sendPersistenceStream_() : BALL::MPISupport
• sendSystem() : BALL::MPISupport
• sense_of_strand : BALL::PDB::RecordSHEET
• separate_activity_file : BALL::QSAR::InputConfiguration
• SEPARATOR : BALL::ResourceFile
• seq_identity : BALL::NMRStarFile::MonomericPolymer::HomologDB
• seq_positive : BALL::NMRStarFile::MonomericPolymer::HomologDB
• seq_to_submitted_percentage : BALL::NMRStarFile::MonomericPolymer::HomologDB
• seqres_records : BALL::PDB::BookKeeping
• sequence_ : BALL::Peptides::PeptideBuilder
• sequence_database_accession_code : BALL::PDB::RecordDBREF
• sequence_database_ID_code : BALL::PDB::RecordDBREF
• sequence_database_name : BALL::PDB::RecordDBREF
• sequence_number : BALL::PDB::RecordSITE , BALL::PDB::RecordTURN , BALL::PDB::Residue
• sequence_number_ : BALL::PDBFile
• sequenceRing() : BALL::RingAnalyser
• sequenceSubstituents_() : BALL::SDGenerator
• ser_pressed() : BALL::VIEW::PeptideDialog
• serial_number : BALL::PDB::RecordANISOU , BALL::PDB::RecordATOM , BALL::PDB::RecordHELIX , BALL::PDB::RecordHETATM , BALL::PDB::RecordMTRIX1 , BALL::PDB::RecordMTRIX2 , BALL::PDB::RecordMTRIX3 , BALL::PDB::RecordSEQRES , BALL::PDB::RecordSIGATM , BALL::PDB::RecordSIGUIJ , BALL::PDB::RecordSSBOND , BALL::PDB::RecordTER , BALL::PDB::RecordTVECT , BALL::PDB::Structure::ConectAtomList
• serialize() : BALL::PoseClustering::ClusterProperties
• serializeWardClusterTree() : BALL::PoseClustering
• serverChanged() : BALL::VIEW::DownloadElectronDensity
• ServerPreferences() : BALL::VIEW::ServerPreferences
• ServerWidget() : BALL::VIEW::ServerWidget
• ses_ : BALL::SESComputer , BALL::SESSingularityCleaner , BALL::TriangulatedSES
• SESComputer : BALL::ReducedSurface , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESComputer , BALL::SESEdge , BALL::SESFace , BALL::SESSingularityCleaner , BALL::SESVertex , BALL::SolventExcludedSurface
• SESEdge : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex
• SESFace : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex
• SESSingularityCleaner : BALL::ReducedSurface , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESSingularityCleaner , BALL::SESVertex , BALL::SolventExcludedSurface
• SESTriangulator : BALL::ReducedSurface , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESTriangulator , BALL::SESVertex , BALL::SolventExcludedSurface , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::TriangulatedSES
• SESVertex : BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex
• set() : BALL::Atom , BALL::AtomContainer , BALL::AtomVector , BALL::BitVector , BALL::Chain , BALL::Composite , BALL::CosineTorsion::Values , BALL::Directory , BALL::Exception::GlobalExceptionHandler , BALL::Gradient , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HashGrid3< Item > , BALL::HashSet< Key > , BALL::List< Value > , BALL::MolecularDynamics , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::Options , BALL::PDB::Residue , BALL::PDBAtom , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::PreciseTime , BALL::PropertyManager , BALL::Protein , BALL::Quadruple< T1, T2, T3, T4 > , BALL::ReducedSurface , BALL::RegularExpression , BALL::Residue , BALL::ResourceEntry , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::RuleProcessor , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SecondaryStructure , BALL::Selectable , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::String , BALL::StringHashMap< Value > , BALL::StructureMapper , BALL::Substring , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::Triangle , BALL::TrianglePoint , BALL::TriangulatedSAS , BALL::TriangulatedSES , BALL::TriangulatedSphere , BALL::TriangulatedSurface , BALL::Triple< T1, T2, T3 > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TSurface< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::Box , BALL::VIEW::ColorExtension2 , BALL::VIEW::ColorHSV , BALL::VIEW::ColorProcessor , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::Dataset , BALL::VIEW::Disc , BALL::VIEW::GeometricObject , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Hotkey , BALL::VIEW::Label , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::VIEW::MultiColorExtension , BALL::VIEW::MultiLine , BALL::VIEW::Point , BALL::VIEW::Scene , BALL::VIEW::SimpleBox , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::Vertex2 , BALL::VIEW::Vertex
• setAcidicColor() : BALL::VIEW::ResidueTypeColorProcessor
• setActive() : BALL::VIEW::ClippingPlane
• setAdditionalGridDistance() : BALL::VIEW::ColorProcessor
• setAdvancedElectrostatic() : BALL::AmberNonBonded
• setAlpha() : BALL::LineSearch , BALL::VIEW::ColorRGBA
• setAlphaBlending() : BALL::VIEW::ColorMap
• setAlphas() : BALL::VIEW::MultiColorExtension
• setAltered() : BALL::GeneticIndividual
• setAlternateLocationIndicator() : BALL::PDBAtom
• setAmberDialog() : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog
• setAmberFF() : BALL::VIEW::AmberConfigurationDialog
• setAmbientIntensity() : BALL::VIEW::Stage
• setAminoAcidType() : BALL::Peptides::AminoAcidDescriptor
• setAngle() : BALL::RSEdge , BALL::SASEdge , BALL::VIEW::LightSource
• setAnimationSmoothness() : BALL::VIEW::Scene
• setAntialiasing() : BALL::VIEW::GLRenderer
• setApplyEnabled() : BALL::VIEW::Preferences
• setArgument() : BALL::ConnectedToPredicate , BALL::ExpressionPredicate
• setAromatic() : BALL::SmilesParser::SPAtom
• setAromaticColor() : BALL::VIEW::ResidueTypeColorProcessor
• setAromaticRings() : BALL::AtomTyper , BALL::Kekuliser , BALL::MMFF94ChargeProcessor
• setArrowWidth() : BALL::VIEW::AddCartoonModel
• setAtom() : BALL::Peak< PositionType > , BALL::RSVertex , BALL::SESVertex
• setAtomAveraging() : BALL::CreateSpectrumProcessor
• setAtomForces() : BALL::SnapShot
• setAtomicNumber() : BALL::Element
• setAtomicRadius() : BALL::Element
• setAtomicWeight() : BALL::Element
• setAtomIgnoring() : BALL::CreateSpectrumProcessor
• setAtomPositions() : BALL::Conformation , BALL::SnapShot
• setAtoms() : BALL::CHPI::CHGroup , BALL::CHPISlick::CHGroup
• setAtomType() : BALL::GridBasedScoring , BALL::GridedPLP , BALL::PLPScoring
• setAtomTypeNames() : BALL::GridBasedScoring
• setAtomTypeSmarts() : BALL::HybridisationProcessor
• setAtomVelocities() : BALL::SnapShot
• setAtomVelocitites() : BALL::SnapShot
• setAttenuation() : BALL::VIEW::LightSource
• setAttenuation_() : BALL::VIEW::LightSettings
• setAutoActivatePlugins() : BALL::PluginManager
• setAutoDeletable() : BALL::AutoDeletable
• setBackboneDependent() : BALL::RotamerLibrary
• setBackgroundColor() : BALL::VIEW::Stage
• setBallAndStickStickDashedBondsEnabled() : BALL::VIEW::ModelSettingsDialog
• setBallAndStickStickRadius() : BALL::VIEW::ModelSettingsDialog
• setBallRadius() : BALL::VIEW::AddBallAndStickModel , BALL::VIEW::ModelSettingsDialog
• setBarrier() : BALL::MPISupport
• setBaseColors() : BALL::VIEW::ColorMap
• setBaseDirectory() : BALL::VIEW::HelpViewer
• setBaseFunction() : BALL::ScoringFunction
• setBaseSize() : BALL::VIEW::ForceModel
• setBaseSystemAndPoses() : BALL::PoseClustering
• setBaseSystemAndTransformations() : BALL::PoseClustering
• setBasicColor() : BALL::VIEW::ResidueTypeColorProcessor
• setBathRelaxationTime() : BALL::CanonicalMD
• setBeta() : BALL::LineSearch
• setBit() : BALL::BitVector
• setBlue() : BALL::VIEW::ColorRGBA
• setBondLengths() : BALL::BuildBondsProcessor
• setBondOrder() : BALL::SmartsParser::SPBond
• setBondType() : BALL::ConnectedToPredicate::CTPNode
• setBool() : BALL::Options
• setBoudaryDerivatives() : BALL::CubicSpline1D
• setBoundingBox() : BALL::TRRFile
• setBox() : BALL::PeriodicBoundary
• setBracketedFlag() : BALL::LineSearch
• setBranchDesignator() : BALL::PDBAtom
• setBreakpoints() : BALL::VIEW::ColorByGridProcessor
• setBufferReady() : BALL::VIEW::RenderSetup
• setBusyMode_() : BALL::VIEW::MainControl
• setCamera() : BALL::VIEW::Scene
• SetCamera() : BALL::VIEW::SetCamera
• setCamera() : BALL::VIEW::Stage
• setCappingEnabled() : BALL::VIEW::ClippingPlane
• setCartoonArrowWidth() : BALL::VIEW::ModelSettingsDialog
• setCartoonDNABaseRadius() : BALL::VIEW::ModelSettingsDialog
• setCartoonDNAHelixRadius() : BALL::VIEW::ModelSettingsDialog
• setCartoonDNALadderRadius() : BALL::VIEW::ModelSettingsDialog
• setCartoonHelixRadius() : BALL::VIEW::ModelSettingsDialog
• setCartoonStrandHeight() : BALL::VIEW::ModelSettingsDialog
• setCartoonStrandWidth() : BALL::VIEW::ModelSettingsDialog
• setCartoonTubeRadius() : BALL::VIEW::ModelSettingsDialog
• setCategory() : BALL::CIFFile::SaveFrame
• setCAtom() : BALL::CHPI::CHGroup , BALL::CHPISlick::CHGroup
• setCellAngleAlpha() : BALL::CrystalInfo
• setCellAngleBeta() : BALL::CrystalInfo
• setCellAngleGamma() : BALL::CrystalInfo
• setCellAngles() : BALL::CrystalInfo
• setCellDimensions() : BALL::CrystalInfo
• setCellEdgeLengthA() : BALL::CrystalInfo
• setCellEdgeLengthB() : BALL::CrystalInfo
• setCellEdgeLengthC() : BALL::CrystalInfo
• setCenter() : BALL::RSFace
• setCenterOfTorus() : BALL::RSEdge
• setCFS_() : BALL::SDGenerator
• setChain() : BALL::NMRStarFile::BALLToBMRBMapper
• setChainName() : BALL::Peptides::PeptideBuilder
• setCharge() : BALL::Atom
• setCharmmDialog() : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog
• setCharmmFF() : BALL::VIEW::CharmmConfigurationDialog
• setChirality() : BALL::SmilesParser::SPAtom
• setCircle() : BALL::SASEdge , BALL::SESEdge , BALL::VIEW::Disc
• setClippingPlane() : BALL::VIEW::ClippingDialog
• SetClippingPlane() : BALL::VIEW::SetClippingPlane
• setClippingPlane_() : BALL::VIEW::GeometricControl
• setClippingPlaneX() : BALL::VIEW::GeometricControl
• setClippingPlaneY() : BALL::VIEW::GeometricControl
• setClippingPlaneZ() : BALL::VIEW::GeometricControl
• setClippingPosition() : BALL::VIEW::GeometricControl
• setCoefficient() : BALL::ScoringComponent , BALL::ScoringFunction
• setCoefficients() : BALL::PiecewiseFunction
• setCoefficientStdErrors() : BALL::QSAR::RegressionValidation
• setCoilColor() : BALL::VIEW::SecondaryStructureColorProcessor
• setColor() : BALL::VIEW::ColorButton , BALL::VIEW::GeometricObject , BALL::VIEW::LabelModel , BALL::VIEW::LightSource
• setColor2() : BALL::VIEW::ColorExtension2
• setColor4ub_() : BALL::VIEW::GLRenderer
• setColoringMethod() : BALL::VIEW::Representation
• setColoringSettingsDialog() : BALL::VIEW::DisplayProperties
• setColorProcessor() : BALL::VIEW::Representation
• setColorRGBA_() : BALL::VIEW::GLRenderer
• setColors() : BALL::VIEW::ColorByGridProcessor , BALL::VIEW::ColorTable , BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::MultiColorExtension , BALL::VIEW::PositionColorProcessor
• setColumn() : BALL::TMatrix4x4< T >
• setCombineOperation() : BALL::GridBasedScoring
• setCompareMode() : BALL::String
• setComponentGrouping() : BALL::SmartsParser
• setComponentNumber() : BALL::SmartsParser::SPNode
• setComposite() : BALL::FragmentDistanceCollector , BALL::VIEW::BALLThread , BALL::VIEW::CompositeMessage , BALL::VIEW::Dataset , BALL::VIEW::GeometricObject , BALL::VIEW::Representation
• setCompositeName() : BALL::VIEW::CompositeMessage
• setComposites() : BALL::VIEW::ColorProcessor , BALL::VIEW::Representation
• setConformation() : BALL::Result::ResultData
• setConformationSet() : BALL::DockResult , BALL::PoseClustering , BALL::VIEW::DockingFinishedMessage
• setConstant() : BALL::MutableConstant< DataType >
• setConstants() : BALL::Pair6_12RDFIntegrator , BALL::PairExpRDFIntegrator
• setContactCircle() : BALL::RSEdge
• setContent() : BALL::INIFile , BALL::VIEW::ColorTable , BALL::VIEW::HotkeyTable , BALL::VIEW::PythonSettings
• setContentSize() : BALL::VIEW::MainControl
• setController() : BALL::VIEW::ContourSurfaceDialog , BALL::VIEW::GridVisualizationDialog
• setControlsEnabled_() : BALL::VIEW::LightSettings
• setCorrectionParameter() : BALL::ShiftedLVMMMinimizer
• setCovalentRadius() : BALL::Element
• setCrystalDialog() : BALL::VIEW::GenerateCrystalThread
• setCrystalInfo() : BALL::CrystalGenerator
• setCurrent() : BALL::Directory , BALL::VIEW::InteractionMode
• setCurrentAtom() : BALL::VIEW::Scene
• setCurrentBond() : BALL::VIEW::Scene
• setCurrentCharge() : BALL::GAMESSLogFile
• setCurrentModel() : BALL::PDBInfo
• setCurrentRepresentation() : BALL::VIEW::MaterialSettings
• setCurrentTime() : BALL::MolecularDynamics
• setCursor() : BALL::VIEW::Scene
• setCurvature() : BALL::CubicSpline1D
• setCustomColor() : BALL::VIEW::DisplayProperties
• setCVRes() : BALL::QSAR::ClassificationValidation , BALL::QSAR::RegressionValidation , BALL::QSAR::Validation
• setData() : BALL::BinaryFileAdaptor< T > , BALL::EdgeItem< Node, Edge > , BALL::NodeItem< Node, Edge > , BALL::QSAR::AutomaticModelCreator , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::VIEW::FrameBuffer , BALL::VIEW::ShortcutTableModel
• setDataFolder() : BALL::PartialChargeBase , BALL::PartialChargeProcessor , BALL::QSAR::QSARData , BALL::SimpleBase
• setDataPath() : BALL::Path
• setDataset() : BALL::VIEW::DatasetMessage
• setDatasetControl() : BALL::VIEW::DatasetController
• setDataSource() : BALL::QSAR::Model
• setDCDFile() : BALL::VIEW::MolecularDynamicsDialog
• setDefault() : BALL::Options
• setDefaultBool() : BALL::Options
• setDefaultColor() : BALL::VIEW::ColorButton , BALL::VIEW::ColorProcessor
• setDefaultCommunicator() : BALL::MPISupport
• setDefaultInteger() : BALL::Options
• setDefaultLighting() : BALL::VIEW::Scene
• setDefaultOptions() : BALL::AromaticityProcessor , BALL::AssignBondOrderProcessor , BALL::AStarBondOrderStrategy , BALL::BondOrderAssignmentStrategy , BALL::BranchAndBoundBondOrderStrategy , BALL::BuildBondsProcessor , BALL::CrystalInfo , BALL::EmpiricalHSShiftProcessor , BALL::FPTBondOrderStrategy , BALL::HBondProcessor , BALL::HybridisationProcessor , BALL::ILPBondOrderStrategy , BALL::KGreedyBondOrderStrategy , BALL::Peptides::NameConverter , BALL::PoseClustering , BALL::RingPerceptionProcessor , BALL::SDGenerator , BALL::SideChainPlacementProcessor , BALL::VIEW::SDWidget
• setDefaultOptions_() : BALL::NumericalSAS
• setDefaultPage() : BALL::VIEW::HelpViewer
• setDefaultPeak() : BALL::Experiment< PeakListType >
• setDefaultPositionAddress() : BALL::VIEW::Sphere
• setDefaultRangeValues_() : BALL::VIEW::RaytraceableContourSurfaceDialog
• setDefaultReal() : BALL::Options
• setDefaultValue() : BALL::CubicSpline1D
• setDefaultValues() : BALL::VIEW::Preferences
• setDefaultValues_() : BALL::VIEW::ColoringSettingsDialog , BALL::VIEW::ModelSettingsDialog
• setDefaultVertex1Address() : BALL::VIEW::Vertex2
• setDefaultVertex2Address() : BALL::VIEW::Vertex2
• setDefaultVertexAddress() : BALL::VIEW::Vertex
• setDefaultVertexAddresses() : BALL::VIEW::Vertex2
• setDegree() : BALL::PiecewisePolynomial
• setDeletable() : BALL::VIEW::Message
• setDeleteEntryEnabled() : BALL::VIEW::MainControl
• setDemoMode() : BALL::VIEW::DemoTutorialDialog
• setDensity() : BALL::SurfaceProcessor , BALL::TriangulatedSAS , BALL::TriangulatedSES , BALL::TriangulatedSurface
• setDepth() : BALL::TBox3< T >
• setDepthVector() : BALL::TBox3< T >
• setDescription() : BALL::Result
• setDescriptorIDs() : BALL::QSAR::Model
• setDescriptorNames() : BALL::QSAR::QSARData
• setDiffuseIntensity() : BALL::VIEW::Stage
• setDihedral() : BALL::RotateBond
• setDimension() : BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• setDirection() : BALL::VIEW::LightSource
• setDirection_() : BALL::VIEW::LightSettings
• setDisplayMode() : BALL::DockingAlgorithm
• setDistance() : BALL::FragmentDistanceCollector , BALL::VIEW::AtomDistanceColorProcessor
• setDNABaseRadius() : BALL::VIEW::AddCartoonModel
• setDNAHelixRadius() : BALL::VIEW::AddCartoonModel
• setDNALadderRadius() : BALL::VIEW::AddCartoonModel
• setDockedSystem() : BALL::VIEW::DockResultDialog
• setDockingAlgorithm() : BALL::VIEW::DockingThread , BALL::VIEW::DockProgressDialog
• setDockResult() : BALL::VIEW::DockResultDialog
• setDoNotResize() : BALL::VIEW::TRenderWindow< taPixelDatatype >
• setDotSize() : BALL::VIEW::GridVisualisation
• setDownsamplingFactor() : BALL::VIEW::GLRenderWindow , BALL::VIEW::Scene
• setDrawDNAAsLadderModel() : BALL::VIEW::AddCartoonModel
• setDrawingMode() : BALL::VIEW::Representation
• setDrawingPrecision() : BALL::VIEW::DisplayProperties , BALL::VIEW::ModelProcessor , BALL::VIEW::Representation
• setDuplicateKeyCheck() : BALL::INIFile
• setEdge() : BALL::GraphTriangle< Vertex, Edge, Face > , BALL::SolventAccessibleSurface
• setEditable() : BALL::VIEW::PropEditorWidget , BALL::VIEW::PropertyEditor
• setEditElementType() : BALL::VIEW::Scene
• setEditorData() : BALL::VIEW::ComboBoxDelegate
• setEDSPrefix() : BALL::VIEW::DownloadElectronDensity
• setEDSSuffix() : BALL::VIEW::DownloadElectronDensity
• setElectronegativity() : BALL::Element
• setElement() : BALL::Atom
• setElementCursor() : BALL::VIEW::Scene
• setElementName() : BALL::GAFFCESParser::CESelementConnectionPredicate , BALL::GAFFCESParser::CESelementPredicate
• setEMDBPrefix() : BALL::VIEW::DownloadElectronDensity
• setEMDBSuffix() : BALL::VIEW::DownloadElectronDensity
• setEnableAlpha() : BALL::VIEW::ColorButton
• setEnabled() : BALL::ForceFieldComponent , BALL::VIEW::FakeDriver , BALL::VIEW::InputDeviceDriver
• setEnergy() : BALL::Result::ResultData
• setEnergyDifference() : BALL::VIEW::MinimizationDialog
• setEnergyDifferenceBound() : BALL::EnergyMinimizer
• setEnergyMinimizer() : BALL::VIEW::EnergyMinimizerThread
• setEnergyOutputFrequency() : BALL::EnergyMinimizer , BALL::MolecularDynamics
• setEnergyToAbort() : BALL::EnergyMinimizer , BALL::MolecularDynamics
• setEpsilon() : BALL::RombergIntegrator< Function, DataType >
• setEquivalences() : BALL::MMFF94ParametersBase
• setError_() : BALL::VIEW::PyWidget
• setErrorText() : BALL::VIEW::EditSingleShortcut
• setESParameters() : BALL::MMFF94ChargeProcessor
• setExponent() : BALL::MutablePower< Function, DataType >
• setExpression() : BALL::CreateSpectrumProcessor , BALL::Expression , BALL::NumberOfHydrogenBondAcceptors , BALL::NumberOfHydrogenBondDonors , BALL::NumberOfHydrophobicAtoms , BALL::Selector , BALL::SimpleExperiment1D
• setEyeDistance() : BALL::VIEW::Stage
• setFace() : BALL::GraphEdge< Vertex, Edge, Face > , BALL::SolventAccessibleSurface
• setFDPBDialog() : BALL::VIEW::CalculateFDPBThread
• setFile() : BALL::Exception::GlobalExceptionHandler
• setFilename() : BALL::AssignRadiusProcessor , BALL::FragmentDB , BALL::INIFile , BALL::Parameters , BALL::PDBInfo , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModel , BALL::VIEW::ExportGeometryDialog
• setFileName() : BALL::VIEW::FileObserver , BALL::VIEW::POVRenderer
• setFilename() : BALL::VIEW::PythonSettings
• setFileName() : BALL::VIEW::STLRenderer
• setFilename() : BALL::VIEW::TestFramework
• setFileName() : BALL::VIEW::VRMLRenderer , BALL::VIEW::XML3DRenderer
• setFilter() : BALL::VIEW::ShortcutTableView
• setFinalizeOnDestruct() : BALL::MPISupport
• setFinished() : BALL::ConnectedToPredicate::CTPNode
• setFirst() : BALL::Addition< First, Second, DataType > , BALL::Division< First, Second, DataType > , BALL::Product< First, Second, DataType > , BALL::Subtraction< First, Second, DataType >
• setFirstAtom() : BALL::Bond
• setFirstColor() : BALL::VIEW::ResidueNumberColorProcessor
• setFirstEdge() : BALL::SmartsParser::SPNode
• setFirstMolecule() : BALL::ScoringFunction
• setFirstSPEdge() : BALL::SmartsParser::SPEdge
• setFirstSPNode() : BALL::SmartsParser::SPEdge
• setFirstStrand() : BALL::DNAMutator
• setFitnessValue() : BALL::GeneticIndividual
• setFlags() : BALL::VIEW::PixelFormat
• setFlexDefinition() : BALL::Receptor
• setFlexibleResidues() : BALL::ScoringFunction , BALL::SideChainOptimizer
• setFlushToDiskFrequency() : BALL::SnapShotManager
• setFocalDistance() : BALL::VIEW::Stage
• setFogIntensity() : BALL::VIEW::GLRenderer , BALL::VIEW::Stage
• setFont() : BALL::VIEW::Label , BALL::VIEW::LabelModel , BALL::VIEW::MainControlPreferences
• setFontSize() : BALL::VIEW::Label
• setForce() : BALL::Atom
• setForceBase() : BALL::VIEW::ModelSettingsDialog
• setForceField() : BALL::AmberEvaluation , BALL::DNAMutator , BALL::ForceFieldComponent , BALL::ForceFieldEvaluation , BALL::SnapShotManager
• setForceMaxLenght() : BALL::VIEW::ModelSettingsDialog
• setForceOffset() : BALL::VIEW::ModelSettingsDialog
• setForceScaling() : BALL::VIEW::ModelSettingsDialog
• setForceStorage() : BALL::TRRFile
• setFormalCharge() : BALL::Atom , BALL::SmilesParser::SPAtom
• setFormalCharge_() : BALL::VIEW::EditMode , BALL::VIEW::Scene
• setFormat() : BALL::VIEW::FrameBuffer
• setFPSEnabled() : BALL::VIEW::Scene
• setFracVar() : BALL::QSAR::KPCRModel , BALL::QSAR::PCRModel
• setFragmentDB() : BALL::ElectrostaticPotentialCalculator , BALL::FragmentDB::BuildBondsProcessor , BALL::FragmentDB::NormalizeNamesProcessor , BALL::Mutator , BALL::Peptides::PeptideBuilder , BALL::ReconstructFragmentProcessor
• setFrameBufferFormat() : BALL::VIEW::BufferedRenderer
• setFrustum() : BALL::VIEW::RTfactRenderer
• setFullScreen() : BALL::VIEW::Scene
• setFunction() : BALL::CubicFunction< Function, DataType > , BALL::MutablePower< Function, DataType > , BALL::NumericalIntegrator< Function, DataType > , BALL::Reciprocal< Function, DataType > , BALL::SquareFunction< Function, DataType >
• setGeometricObjects() : BALL::VIEW::Representation
• setGLRenderer() : BALL::VIEW::MeshBuffer , BALL::VIEW::Scene
• setGreen() : BALL::VIEW::ColorRGBA
• setGrid() : BALL::VIEW::ContourSurfaceDialog , BALL::VIEW::GridVisualisation , BALL::VIEW::GridVisualizationDialog , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::RaytraceableContourSurfaceDialog
• setGroup() : BALL::Element
• setGuest() : BALL::VIEW::DockWidget
• setHandleStreamsExternally() : BALL::XDRPersistenceManager
• setHashGrid() : BALL::ScoreGridSet
• setHAtom() : BALL::CHPI::CHGroup , BALL::CHPISlick::CHGroup
• setHBondRadius() : BALL::VIEW::ModelSettingsDialog
• setHeight() : BALL::TBox3< T > , BALL::VIEW::FrameBufferFormat
• setHeightVector() : BALL::TBox3< T >
• setHelixColor() : BALL::VIEW::SecondaryStructureColorProcessor
• setHelixRadius() : BALL::VIEW::AddCartoonModel
• setHidden() : BALL::VIEW::ClippingPlane , BALL::VIEW::Representation
• setHTMLView() : BALL::VIEW::HTMLViewDock
• setHue() : BALL::VIEW::ColorHSV
• setHumanReadable() : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• setHydrophobicColor() : BALL::VIEW::ResidueTypeColorProcessor
• setIcon() : BALL::VIEW::ModularWidget
• setID() : BALL::Conformation
• setId() : BALL::FlexibleMolecule
• setID() : BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBInfo , BALL::Protein , BALL::Residue
• setIdentifier() : BALL::Embeddable
• setIdentity() : BALL::TMatrix4x4< T > , BALL::TQuaternion< T >
• setImportant() : BALL::VIEW::LogEvent
• setImprovedFlag() : BALL::StrangLBFGSMinimizer
• setInBrackets() : BALL::SmilesParser::SPAtom
• setIndex() : BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::SnapShot , BALL::VIEW::EditSingleShortcut
• setIndices() : BALL::TriangulatedSurface
• setInfo() : BALL::VIEW::Scene
• setInfoColor() : BALL::VIEW::Stage
• setINIFileSectionName() : BALL::VIEW::PreferencesEntry
• setInputParameters() : BALL::DockResultFile
• setInsertionCode() : BALL::Nucleotide , BALL::Residue
• setInteger() : BALL::Options
• setIntensity() : BALL::Peak< PositionType > , BALL::VIEW::LightSource
• setIntercept() : BALL::ScoringFunction
• setInternal() : BALL::SmartsParser::SPEdge , BALL::SmartsParser::SPNode
• setInterpolationBoundaries() : BALL::VIEW::ColorMap
• setIntersectionPoint() : BALL::RSEdge
• setIntervals() : BALL::PiecewiseFunction
• setIsotope() : BALL::SmilesParser::SPAtom
• setIstream() : BALL::PersistenceManager
• setKineticEnergy() : BALL::SnapShot
• setKw() : BALL::QSAR::ALLModel
• setLabelText_() : BALL::VIEW::ModelSettingsDialog
• setLastColor() : BALL::VIEW::ResidueNumberColorProcessor
• setLevel() : BALL::LogStream
• setLibraryFeatures() : BALL::BinaryFingerprintMethods
• setLigand() : BALL::DiffGridBasedScoring , BALL::DockingAlgorithm , BALL::GridedPLP , BALL::PLPScoring , BALL::ScoringFunction
• setLigandConformation() : BALL::Result::ResultData
• setLigandConformationId() : BALL::Result::ResultData
• setLigandIntraMolecular() : BALL::RotationalEntropy , BALL::ScoringComponent
• setLights() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::RTfactRenderer , BALL::VIEW::TilingRenderer
• setLine() : BALL::Exception::GlobalExceptionHandler , BALL::INIFile
• setLine_() : BALL::INIFile::IteratorTraits_
• setLinked() : BALL::ConnectedToPredicate::CTPNode
• setLocked() : BALL::VIEW::ServerWidget::BALLViewServer
• setLoggingFilename() : BALL::VIEW::MainControl
• setLogicalOperator() : BALL::SmartsParser::SPEdge , BALL::SmartsParser::SPNode
• setLookAtPosition() : BALL::VIEW::Camera
• setLookUpVector() : BALL::VIEW::Camera
• setLower() : BALL::FermiBaseFunction , BALL::ScoringBaseFunction
• setLowerBound() : BALL::CubicSpline1D , BALL::LineSearch
• setLowerDerivative() : BALL::CubicSpline1D
• setMainControl() : BALL::VIEW::AtomOverview::ApplyProcessor , BALL::VIEW::BALLThread
• setMajorRadiusOfTorus() : BALL::RSEdge
• setMatchingMode() : BALL::DNAMutator
• setMaterial_() : BALL::VIEW::GLRenderer
• setMatrix() : BALL::VIEW::TransformationMessage
• setMaxColor() : BALL::VIEW::InterpolateColorProcessor
• setMaxDistanceColor() : BALL::VIEW::AtomDistanceColorProcessor
• setMaxFps() : BALL::DockingAlgorithm
• setMaxGradient() : BALL::EnergyMinimizer , BALL::VIEW::MinimizationDialog
• setMaximalNumberOfIterations() : BALL::MolecularDynamics
• setMaximalSimulationTime() : BALL::MolecularDynamics
• setMaximumDisplacement() : BALL::EnergyMinimizer
• setMaximumNumberOfErrors() : BALL::ForceField , BALL::ScoringFunction
• setMaximumUnassignedAtoms() : BALL::AssignBaseProcessor , BALL::Templates
• setMaxIterations() : BALL::VIEW::MinimizationDialog
• setMaxLength() : BALL::VIEW::ForceModel
• setMaxLevel() : BALL::LogStream
• setMaxNumberOfIterations() : BALL::EnergyMinimizer
• setMaxNumOfColumns() : BALL::ShiftedLVMMMinimizer
• setMaxNumOfStoredVectPairs() : BALL::StrangLBFGSMinimizer
• setMaxNumSteps() : BALL::RombergIntegrator< Function, DataType >
• setMaxOptimizationSteps() : BALL::DNAMutator
• setMaxSameEnergy() : BALL::EnergyMinimizer
• setMaxSteps() : BALL::LineSearch
• setMaxValue() : BALL::VIEW::GridColorWidget , BALL::VIEW::GridVisualizationDialog , BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::ModifyRepresentationDialog
• setMenuHelp() : BALL::VIEW::ModularWidget
• setMenuHint() : BALL::VIEW::MainControl
• setMesh() : BALL::VIEW::MeshBuffer
• setMessage() : BALL::Exception::GeneralException , BALL::Exception::GlobalExceptionHandler , BALL::VIEW::LogEvent , BALL::VIEW::MessageEvent
• setMethod() : BALL::Result
• setMicroCanonical() : BALL::VIEW::MolecularDynamicsDialog
• setMiddleColor() : BALL::VIEW::ResidueNumberColorProcessor
• setMidValue() : BALL::VIEW::GridColorWidget , BALL::VIEW::GridVisualizationDialog , BALL::VIEW::ModifyRepresentationDialog
• setMinColor() : BALL::VIEW::InterpolateColorProcessor
• setMinGridSpacing() : BALL::VIEW::ColorProcessor
• setMinimizer() : BALL::DNAMutator , BALL::LineSearch
• setMinLevel() : BALL::LogStream
• setMinMaxColors() : BALL::VIEW::ColorMap
• setMinQuality() : BALL::QSAR::AutomaticModelCreator
• setMinValue() : BALL::VIEW::GridColorWidget , BALL::VIEW::GridVisualizationDialog , BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::ModifyRepresentationDialog
• setMMFF94() : BALL::VIEW::MMFF94ConfigurationDialog
• setMMFF94Dialog() : BALL::VIEW::MinimizationDialog , BALL::VIEW::MolecularDynamicsDialog
• setMode() : BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::LabelModel , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::UIOperationMode
• setMode_() : BALL::VIEW::InteractionModeManager
• setModel() : BALL::QSAR::FeatureSelection
• setModelData() : BALL::VIEW::ComboBoxDelegate
• setModelInformation() : BALL::VIEW::MainControl , BALL::VIEW::Representation
• setModelProcessor() : BALL::VIEW::Representation
• setModelSettingsDialog() : BALL::VIEW::DisplayProperties
• setModelType() : BALL::VIEW::ColorProcessor , BALL::VIEW::Representation
• setMolecularDynamics() : BALL::VIEW::MDSimulationThread
• setMolecule() : BALL::CIFFile
• setMoleculeName() : BALL::GAMESSDatFile , BALL::GAMESSLogFile
• setMouseSensitivity() : BALL::VIEW::InteractionMode , BALL::VIEW::Scene
• setMouseWheelSensitivity() : BALL::VIEW::Scene
• setMpiInfo() : BALL::MPISupport
• setMultithreading() : BALL::VIEW::MainControl
• setMutated() : BALL::GeneticIndividual
• setMutations() : BALL::SideChainPlacementProcessor
• setName() : BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::CIFFile::Datablock , BALL::Constraint , BALL::Descriptor , BALL::Element , BALL::Exception::GlobalExceptionHandler , BALL::File , BALL::ForceField , BALL::ForceFieldComponent , BALL::Options , BALL::PDBInfo , BALL::ReferenceArea , BALL::ResidueRotamerSet , BALL::ScoringComponent , BALL::ScoringFunction , BALL::ShiftModule , BALL::SolventDescriptor , BALL::VIEW::Dataset , BALL::VIEW::Representation
• setNamesTitle() : BALL::VIEW::ColorTable
• setNamingStandard() : BALL::FragmentDB::NormalizeNamesProcessor
• setNeedsSSSR() : BALL::SmartsParser
• setNeedsUpdate() : BALL::VIEW::Representation
• setNegate() : BALL::ExpressionTree
• setNextComponentNumberToSubTree() : BALL::SmartsParser
• setNMRAtomDataSet() : BALL::NMRStarFile::BALLToBMRBMapper
• setNMRAtomDataSetByName() : BALL::NMRStarFile::BALLToBMRBMapper
• setNMRStarFile() : BALL::NMRStarFile::BALLToBMRBMapper
• setNoComponents() : BALL::QSAR::KPLSModel , BALL::QSAR::PLSModel
• setNoOrthoComponents() : BALL::QSAR::OPLSModel
• setNormal() : BALL::RSFace , BALL::SESVertex , BALL::TrianglePoint , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
• setNormalizationEnabled() : BALL::VIEW::ColorByGridProcessor , BALL::VIEW::GridColorWidget
• setNormalizationParameters() : BALL::ScoringComponent , BALL::ScoringFunction
• setNot() : BALL::SmartsParser::SPBond , BALL::SmartsParser::SPEdge , BALL::SmartsParser::SPNode
• setNotProperty() : BALL::SmartsParser::SPAtom
• setNucleotideMapping() : BALL::DNAMutator
• setNullDistanceColor() : BALL::VIEW::AtomDistanceColorProcessor
• setNumberDensity() : BALL::SolventDescriptor
• setNumberDesiredAtoms() : BALL::ReferenceArea
• setNumberOfATOMRecords() : BALL::PDBInfo
• setNumberOfAtoms() : BALL::SnapShot
• setNumberOfColors() : BALL::VIEW::ColorMap
• setNumberOfFFTTransforms() : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• setNumberOfHETATMRecords() : BALL::PDBInfo
• setNumberOfiFFTTransforms() : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• setNumberOfIteration() : BALL::MolecularDynamics
• setNumberOfIterations() : BALL::EnergyMinimizer
• setNumberOfModels() : BALL::PDBInfo
• setNumberOfPartners() : BALL::GAFFCESParser::CESelementConnectionPredicate , BALL::GAFFCESParser::CESwildcardsConnectionPredicate
• setNumberOfRecords() : BALL::PDBInfo
• setNumberOfSteps() : BALL::VIEW::MDSimulationThread , BALL::VIEW::MolecularDynamicsDialog
• setNumberOfStepsBetweenUpdates() : BALL::VIEW::SimulationThread
• setNumberOfTorsions() : BALL::ResidueRotamerSet
• setNumLevels() : BALL::VIEW::ColorByGridProcessor
• setObject() : BALL::VIEW::RegisterHelpSystemMessage
• setOccupancy() : BALL::PDBAtom
• setOffScreenRendering() : BALL::VIEW::Scene
• setOffset() : BALL::VIEW::BufferedRenderer , BALL::VIEW::ForceModel , BALL::VIEW::RenderSetup
• setOmega() : BALL::Peptides::AminoAcidDescriptor
• setOmega_() : BALL::Peptides::PeptideBuilder
• setOpenItems() : BALL::VIEW::NewSelectionMessage
• setOptions() : BALL::AmberEvaluation , BALL::ForceFieldEvaluation
• setOrder() : BALL::Bond
• setOrigin() : BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• setOrthographicZoom() : BALL::VIEW::GLRenderer
• setOstream() : BALL::PersistenceManager , BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• setOtherColor() : BALL::VIEW::ResidueTypeColorProcessor
• setOutputFormatSource() : BALL::CommandlineParser
• setOutputParameters() : BALL::DockResultFile
• setParameterAsAdvanced() : BALL::CommandlineParser
• setParameterRestrictions() : BALL::CommandlineParser
• setParameters() : BALL::QSAR::ALLModel , BALL::QSAR::GPModel , BALL::QSAR::KNNModel , BALL::QSAR::KPCRModel , BALL::QSAR::KPLSModel , BALL::QSAR::LDAModel , BALL::QSAR::LibsvmModel , BALL::QSAR::Model , BALL::QSAR::NBModel , BALL::QSAR::OPLSModel , BALL::QSAR::PCRModel , BALL::QSAR::PLSModel , BALL::QSAR::RRModel , BALL::QSAR::SNBModel , BALL::ScoreGridSet , BALL::ShiftModule
• setParameters_() : BALL::VIEW::RunGAMESSDialog
• setParent() : BALL::Conformation , BALL::ConformationSet , BALL::ConnectedToPredicate::CTPNode , BALL::HashGridBox3< Item > , BALL::VIEW::AtomOverview
• setPeaks() : BALL::ShiftModel1D , BALL::ShiftModel2D
• setPeriod() : BALL::Element
• setPharmacophoreConstraint() : BALL::ScoreGridSet
• setPhi() : BALL::Peptides::AminoAcidDescriptor
• setPhysStepWidth() : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• setPitch() : BALL::VIEW::FrameBufferFormat
• setPixelFormat() : BALL::VIEW::FrameBufferFormat
• setPluginDirectories() : BALL::PluginManager
• setPoint() : BALL::SASVertex , BALL::SESVertex , BALL::TBox3< T > , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::VIEW::ClippingPlane , BALL::VIEW::GridVisualisation
• setPolarColor() : BALL::VIEW::ResidueTypeColorProcessor
• setPort() : BALL::TCPServer , BALL::VIEW::ServerWidget
• setPosition() : BALL::Atom , BALL::Composite::CompositeIteratorTraits , BALL::Peak< PositionType > , BALL::VIEW::LightSource , BALL::VIEW::Sphere
• setPosition_() : BALL::VIEW::LightSettings
• setPositionAddress() : BALL::VIEW::Sphere
• setPositions() : BALL::CubicSpline1D
• setPotentialEnergy() : BALL::SnapShot
• setPOVNumber() : BALL::VIEW::Scene
• setPrecision() : BALL::TRRFile
• setPredicate() : BALL::CompositeIteratorTraits , BALL::ExpressionTree
• setPreferencesEnabled_() : BALL::VIEW::MainControl
• setPrefix() : BALL::LogStream , BALL::RuleEvaluator , BALL::VIEW::DownloadPDBFile
• setPreview() : BALL::VIEW::Scene
• setPreviewMode() : BALL::VIEW::Renderer
• setProbeRadius() : BALL::SurfaceProcessor , BALL::VIEW::AddSurfaceModel
• setProcessor() : BALL::VIEW::AssignBondOrderResultsDialog
• setProject() : BALL::VIEW::HelpViewer
• setProjection() : BALL::VIEW::GLRenderer
• setProjectionMode() : BALL::VIEW::Camera
• setProperty() : BALL::PropertyManager , BALL::SmartsParser::SPAtom
• setPropertyManager() : BALL::VIEW::PropertyEditor
• setProteinName() : BALL::Peptides::PeptideBuilder
• setPsi() : BALL::Peptides::AminoAcidDescriptor
• setQ2() : BALL::QSAR::RegressionValidation
• setQualityIncreaseCutoff() : BALL::QSAR::FeatureSelection
• setQueryFeatures() : BALL::BinaryFingerprintMethods
• setRadius() : BALL::Atom , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredTube
• setRange() : BALL::VIEW::ColorMap
• setRDF() : BALL::RDFIntegrator
• setRDFIntegrator() : BALL::Pair6_12InteractionEnergyProcessor
• setRDFParameters() : BALL::Pair6_12InteractionEnergyProcessor
• setReadPDBModels() : BALL::VIEW::MolecularFileDialog
• setReal() : BALL::Options
• setReceiveBufferUpdates() : BALL::VIEW::RenderSetup
• setReceiver() : BALL::VIEW::InputDeviceDriver , BALL::VIEW::InputPlugin
• setReceptor() : BALL::ScoringFunction
• setReceptorConformation() : BALL::Result::ResultData
• setReceptorConformationId() : BALL::Result::ResultData
• setRecursive() : BALL::SmartsParser , BALL::SmartsParser::SPNode
• setRed() : BALL::VIEW::ColorRGBA
• setReferenceTemperature() : BALL::MolecularDynamics
• setRefresh() : BALL::VIEW::MinimizationDialog
• setRegisterMode() : BALL::VIEW::RegisterHelpSystemMessage
• setRelativeToCamera() : BALL::VIEW::LightSource
• setRemotenessIndicator() : BALL::PDBAtom
• setRenderMode() : BALL::VIEW::GLRenderer
• setRepresentation() : BALL::RadialDistributionFunction , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::RepresentationMessage , BALL::VIEW::UpdateRepresentationThread
• setResolution() : BALL::GridAnalysis
• setRibbonMode() : BALL::VIEW::AddBackboneModel
• setRightVector() : BALL::TBox3< T >
• setRing() : BALL::CHPI::AromaticRing , BALL::CHPISlick::AromaticRing
• setRings() : BALL::AddHydrogenProcessor , BALL::AtomTyper , BALL::Kekuliser
• setRingSize() : BALL::RingFinder
• setRoot() : BALL::SmartsParser
• setRotamer() : BALL::ResidueRotamerSet
• setRotatableBonds() : BALL::PLP
• setRotation() : BALL::TMatrix4x4< T >
• setRotationX() : BALL::TMatrix4x4< T >
• setRotationY() : BALL::TMatrix4x4< T >
• setRotationZ() : BALL::TMatrix4x4< T >
• setRow() : BALL::TMatrix4x4< T >
• setRS() : BALL::SolventAccessibleSurface
• setRSEdge() : BALL::SESEdge , BALL::SESFace
• setRSFace() : BALL::SESFace
• setRSVertex() : BALL::SESFace
• setRubberBandGeometry() : BALL::VIEW::Scene
• setRubberBandVisible() : BALL::VIEW::Scene
• sets_ : BALL::MOL2File
• setSaturation() : BALL::VIEW::ColorHSV
• setSaveImages() : BALL::VIEW::MDSimulationThread
• setScale() : BALL::TMatrix4x4< T >
• setScaling() : BALL::VIEW::ForceModel
• setScalingFactorFile() : BALL::GeneralizedBornModel
• setScalingFactors() : BALL::GeneralizedBornModel
• setScene() : BALL::VIEW::AnimationThread
• setScoring() : BALL::ConformationSet
• setScoringFunction() : BALL::Constraint , BALL::DockingAlgorithm , BALL::PharmacophoreConstraint , BALL::ReferenceArea , BALL::ScoringComponent
• setScoringMethod() : BALL::Result::ResultData
• setScoringType() : BALL::StructurePreparer
• setScreenShotNumber() : BALL::VIEW::Scene
• setSecond() : BALL::Addition< First, Second, DataType > , BALL::Division< First, Second, DataType > , BALL::Product< First, Second, DataType > , BALL::Subtraction< First, Second, DataType >
• setSecondaryStructureType_() : BALL::SecondaryStructureProcessor
• setSecondAtom() : BALL::Bond
• setSecondEdge() : BALL::SmartsParser::SPNode
• setSecondMolecule() : BALL::ScoringFunction
• setSecondSPEdge() : BALL::SmartsParser::SPEdge
• setSecondSPNode() : BALL::SmartsParser::SPEdge
• setSecondStrand() : BALL::DNAMutator
• setSelected() : BALL::Selectable , BALL::VIEW::GeometricObjectSelectionMessage
• setSelection() : BALL::VIEW::GenericSelectionMessage , BALL::VIEW::GeometricObjectSelectionMessage
• setSelection_() : BALL::VIEW::MolecularControl
• setSender() : BALL::VIEW::Message
• setShiftRange() : BALL::Bruker2DFile
• setShininess() : BALL::VIEW::Stage
• setShortcutText() : BALL::VIEW::EditSingleShortcut
• setShowLightSources() : BALL::VIEW::Scene
• setShowOnlyInLogView() : BALL::VIEW::LogEvent
• setShowSelected() : BALL::VIEW::AtomDistanceColorProcessor
• setShowSelectionInfos() : BALL::VIEW::CompositeMessage
• setSimpleAtomTypes() : BALL::StructurePreparer
• setSimulationThread() : BALL::VIEW::MainControl
• setSingular() : BALL::RSEdge , BALL::RSFace
• setSize() : BALL::BitVector , BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RTfactRenderer , BALL::VIEW::TilingRenderer , BALL::VIEW::XML3DRenderer
• setSmoothLines() : BALL::VIEW::GLRenderer
• setSnapShotFrequency() : BALL::EnergyMinimizer , BALL::MolecularDynamics
• setSnapShotManager() : BALL::VIEW::SnapshotVisualisationDialog
• setSoluteDC() : BALL::GeneralizedBornModel
• setSolventAtomDescriptorList() : BALL::SolventDescriptor
• setSolventDC() : BALL::GeneralizedBornModel
• setSolventDescriptor() : BALL::Pair6_12InteractionEnergyProcessor
• setSource() : BALL::VIEW::DragLogView
• setSpaceGroup() : BALL::CrystalInfo
• setSpaceGroupFilename() : BALL::CrystalGenerator
• setSpacing() : BALL::Spectrum< DataT, PeakT, PositionT >
• setSPAtom() : BALL::SmartsParser::SPNode
• setSPBond() : BALL::SmartsParser::SPEdge
• setSpecularIntensity() : BALL::VIEW::Stage
• setSphere() : BALL::SASFace
• setSplitRadius() : BALL::VIEW::ModifyRepresentationDialog
• setSSSR() : BALL::SmartsMatcher , BALL::SmartsParser
• setStage() : BALL::VIEW::Renderer , BALL::VIEW::SceneMessage
• setStateAssignment() : BALL::FPTBondOrderStrategy::DPBackTracking_
• setStatusbarText() : BALL::VIEW::DatasetController , BALL::VIEW::MainControl , BALL::VIEW::ModularWidget
• setStereoDelta() : BALL::VIEW::GLRenderWindow
• setStereoFrustumConversion() : BALL::VIEW::Renderer
• setStereoMode() : BALL::VIEW::InteractionModeManager , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup
• setStickRadius() : BALL::VIEW::AddBallAndStickModel
• setSticks() : BALL::Spectrum< DataT, PeakT, PositionT >
• setStickStickRadius() : BALL::VIEW::ModelSettingsDialog
• setStrandColor() : BALL::VIEW::SecondaryStructureColorProcessor
• setStrandHeight() : BALL::VIEW::AddCartoonModel
• setStrands() : BALL::DNAMutator
• setStrandWidth() : BALL::VIEW::AddCartoonModel
• setStride() : BALL::VIEW::BufferedRenderer
• setStyle() : BALL::VIEW::MainControlPreferences
• setSuffix() : BALL::VIEW::DownloadPDBFile
• setSupportedFormats() : BALL::CommandlineParser
• setSurfaceDrawingPrecision() : BALL::VIEW::DisplayProperties , BALL::VIEW::ModelProcessor , BALL::VIEW::Representation
• setSurfaceProbeRadius() : BALL::VIEW::ModelSettingsDialog
• setSwapEndian() : BALL::BinaryFileAdaptor< T >
• setSwapSideBySideStereo() : BALL::VIEW::Stage
• setSymbol() : BALL::ConnectedToPredicate::CTPNode , BALL::Element
• setSysPath() : BALL::PyInterpreter
• setSystem() : BALL::CrystalGenerator , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::SnapShotManager , BALL::VIEW::FDPBDialog , BALL::VIEW::SDWidget
• setSystems() : BALL::VIEW::DockDialog
• setTable() : BALL::VIEW::AtomOverview::ApplyProcessor , BALL::VIEW::AtomOverview::OverviewProcessor
• setTemperature() : BALL::VIEW::MolecularDynamicsDialog
• setTemperatureFactor() : BALL::PDBAtom
• setTemplateResidue() : BALL::ResidueRotamerSet
• setTestLine() : BALL::QSAR::Validation
• setText() : BALL::VIEW::Label , BALL::VIEW::LabelModel
• setTexture() : BALL::VIEW::GridVisualisation
• setThreshold() : BALL::MolecularInteractions
• setTimeout() : BALL::SimpleDownloader
• setTimestamp() : BALL::Result
• setTimeStep() : BALL::CanonicalMD , BALL::MicroCanonicalMD , BALL::MolecularDynamics
• setTimestep() : BALL::TRRFile
• setTimeStep() : BALL::VIEW::MolecularDynamicsDialog
• setTimeToLive() : BALL::VIEW::RenderSetup
• setTo() : BALL::TContourSurface< T >::Cube
• setToolInfo() : BALL::DockResultFile , BALL::Result
• setToolManual() : BALL::CommandlineParser
• setTorsionAngle_() : BALL::ResidueRotamerSet
• setTorsionPhi() : BALL::ResidueRotamerSet
• setTorsionPsi() : BALL::ResidueRotamerSet
• setTrainingLine() : BALL::QSAR::Validation
• setTraits() : BALL::BaseIterator< Container, DataType, Position, Traits >
• setTrajectoryFile() : BALL::SnapShotManager , BALL::VIEW::SimulationThread
• setTransformation() : BALL::TransformationProcessor
• setTranslation() : BALL::TMatrix4x4< T > , BALL::TranslationProcessor
• setTransparency() : BALL::VIEW::ColorProcessor , BALL::VIEW::DisplayProperties , BALL::VIEW::ElementColorProcessor , BALL::VIEW::Representation , BALL::VIEW::ResidueNameColorProcessor , BALL::VIEW::ResidueTypeColorProcessor , BALL::VIEW::SecondaryStructureColorProcessor
• setTransparency_() : BALL::VIEW::GridColorWidget
• setTransparencyEnabled() : BALL::VIEW::GridColorWidget
• setTriangle() : BALL::TriangleEdge
• setTubeRadius() : BALL::VIEW::AddBackboneModel , BALL::VIEW::ModelSettingsDialog
• setTurnColor() : BALL::VIEW::SecondaryStructureColorProcessor
• setTurnPoint() : BALL::VIEW::Scene
• setType() : BALL::Atom , BALL::Bond , BALL::ExpressionTree , BALL::SecondaryStructure , BALL::SESEdge , BALL::SESFace , BALL::SurfaceProcessor , BALL::VIEW::AddSurfaceModel , BALL::VIEW::CompositeMessage , BALL::VIEW::Dataset , BALL::VIEW::DatasetMessage , BALL::VIEW::LightSource , BALL::VIEW::MolecularTaskMessage , BALL::VIEW::RepresentationMessage , BALL::VIEW::SceneMessage
• setTypeName() : BALL::Atom
• setUnit() : BALL::Descriptor
• setUnitConversionFactor() : BALL::GAMESSLogFile
• setUnsignedChar() : BALL::BitVector
• setUnsignedInt() : BALL::BitVector
• setUnsignedLong() : BALL::BitVector
• setUnsignedShort() : BALL::BitVector
• setup() : BALL::AmberBend , BALL::AmberNonBonded , BALL::AmberStretch , BALL::AmberTorsion , BALL::AromaticRingStacking , BALL::AtomTyper , BALL::BuriedPolar , BALL::CanonicalMD , BALL::CharmmBend , BALL::CharmmImproperTorsion , BALL::CharmmNonBonded , BALL::CharmmStretch , BALL::CharmmTorsion , BALL::CHPI , BALL::CHPISlick , BALL::ConformationSet , BALL::DNAMutator , BALL::DockingAlgorithm , BALL::DockProblem , BALL::EnergyMinimizer , BALL::EvolutionaryDocking , BALL::FDPB , BALL::ForceField , BALL::ForceFieldComponent , BALL::FresnoTypes , BALL::GeneralizedBornModel , BALL::GeneticAlgorithm , BALL::GeometricFit , BALL::GridBasedScoring::GridSetsResult , BALL::GridBasedScoring , BALL::GridedMM , BALL::GridedPLP , BALL::HydrogenBond , BALL::HydrogenBondSlick , BALL::IMGDock , BALL::Kekuliser , BALL::Lipophilic , BALL::MicroCanonicalMD , BALL::MMFF94ChargeProcessor , BALL::MMFF94NonBonded , BALL::MMFF94OutOfPlaneBend , BALL::MMFF94StretchBend , BALL::MMFF94Torsion , BALL::MMScoring , BALL::MolecularDynamics , BALL::Mutator , BALL::NonpolarSolvation , BALL::PBScoring , BALL::PeriodicBoundary , BALL::PLP , BALL::PLPScoring , BALL::Polarity , BALL::PolarSolvation , BALL::RandomNumberGenerator , BALL::ScoringComponent , BALL::ScoringFunction , BALL::SLICKEnergy , BALL::SLICKScore , BALL::SnapShotManager , BALL::VanDerWaalsSlick , BALL::VIEW::EditSingleShortcut
• setUp() : BALL::VIEW::FakeDriver , BALL::VIEW::InputDeviceDriver
• setup() : BALL::VIEW::SnapshotManagerInterface
• setup_() : BALL::MMFF94AtomTypeEquivalences , BALL::MMFF94AtomTypes , BALL::MMFF94BendParameters , BALL::MMFF94ESParameters , BALL::MMFF94ParametersBase , BALL::MMFF94PlaneParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94StretchParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94VDWParameters , BALL::Rescoring1D , BALL::Rescoring3D , BALL::Rescoring , BALL::VIEW::MainControl , BALL::VIEW::SDWidget
• setup_time_stamp_ : BALL::ForceField
• setupAromaticTypes() : BALL::MMFF94AtomTyper
• setupAtomArray() : BALL::FDPB
• setupBoundary() : BALL::FDPB
• setUpdateInterval() : BALL::VIEW::FileObserver
• setUpdateMethod() : BALL::ConjugateGradientMinimizer , BALL::ShiftedLVMMMinimizer
• setUpdateRepresentations() : BALL::VIEW::CompositeMessage
• setupEnvironmentMap() : BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::RTfactRenderer , BALL::VIEW::Scene
• setupEpsGrid() : BALL::FDPB
• setupFlexibleResidues_() : BALL::ScoringFunction
• setupForceField() : BALL::VIEW::MolecularStructure
• setupGridClipPlanes_() : BALL::VIEW::GLRenderer
• setupHydrogenTypes() : BALL::MMFF94AtomTyper
• setupKappaGrid() : BALL::FDPB
• setupLigand() : BALL::AromaticRingStacking , BALL::BuriedPolar , BALL::CHPI , BALL::HydrogenBond , BALL::Lipophilic , BALL::PB , BALL::Polarity , BALL::ScoringComponent
• setUpper() : BALL::FermiBaseFunction , BALL::ScoringBaseFunction
• setUpperBound() : BALL::CubicSpline1D
• setUpperDerivative() : BALL::CubicSpline1D
• setupPhiGrid() : BALL::FDPB
• setupPluginHandlers_() : BALL::Mainframe
• setupProximityLight() : BALL::VIEW::GeometricControl
• setupQGrid() : BALL::FDPB
• setupReferenceLigand() : BALL::GridBasedScoring , BALL::ScoringFunction
• setupSASGrid() : BALL::FDPB
• setupStereo() : BALL::VIEW::GLRenderer , BALL::VIEW::GLRenderWindow , BALL::VIEW::Renderer , BALL::VIEW::RenderTarget , BALL::VIEW::RTfactRenderer
• setupSymbolsToTypes() : BALL::MMFF94AtomTyper
• setupUi_() : BALL::VIEW::PropEditorWidget , BALL::VIEW::PropertyEditor
• setupViewVolume() : BALL::VIEW::Scene
• setURL() : BALL::SimpleDownloader , BALL::VIEW::RegisterHelpSystemMessage
• setUseConjugateGradient() : BALL::VIEW::MinimizationDialog
• setUsedProperty() : BALL::DNAMutator
• setUseFormalCharges() : BALL::Kekuliser
• setUsePotentialGrid() : BALL::VIEW::FieldLineCreator
• setUseShiftedLVMM() : BALL::VIEW::MinimizationDialog
• setUseStrangLBFGS() : BALL::VIEW::MinimizationDialog
• setValue() : BALL::DoubleGene , BALL::INIFile , BALL::PreferencesObject , BALL::ResourceEntry , BALL::VIEW::ColorHSV , BALL::VIEW::ColorTable , BALL::VIEW::HotkeyTable , BALL::VIEW::PreferencesEntry::ExtendedPreferencesObject , BALL::VIEW::ShortcutRegistry
• setValue_() : BALL::VIEW::ModelSettingsDialog , BALL::VIEW::PreferencesEntry
• setValueAllowed() : BALL::VIEW::PreferencesEntry , BALL::VIEW::StageSettings
• setValues() : BALL::CubicSpline1D
• setVanDerWaalsRadius() : BALL::Element
• setVDWRadiusFactor() : BALL::VIEW::AddVanDerWaalsModel , BALL::VIEW::ModelSettingsDialog
• setVector() : BALL::Options
• setVelocity() : BALL::Atom
• setVelocityStorage() : BALL::TRRFile
• setVendorPropertyNames() : BALL::MolDB
• setVerbosity() : BALL::CubicSpline1D , BALL::CubicSpline2D
• setVerbosityLevel() : BALL::BinaryFingerprintMethods
• setVertex() : BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::SolventAccessibleSurface , BALL::VIEW::Vertex
• setVertex1() : BALL::VIEW::Vertex2
• setVertex1Address() : BALL::VIEW::Vertex2
• setVertex2() : BALL::VIEW::Vertex2
• setVertex2Address() : BALL::VIEW::Vertex2
• setVertexAddress() : BALL::VIEW::Vertex
• setVertexAddresses() : BALL::VIEW::Vertex2
• setVertices() : BALL::VIEW::Vertex2
• setViewPoint() : BALL::VIEW::Camera
• setViewPoint_() : BALL::VIEW::Scene
• setVisualizationPose() : BALL::DockingAlgorithm
• setVRMLNumber() : BALL::VIEW::Scene
• setWhatsThisEnabled() : BALL::VIEW::HelpViewer
• setWidgetStack() : BALL::VIEW::PreferencesEntry
• setWidgetStackName() : BALL::VIEW::PreferencesEntry
• setWidgetVisible() : BALL::VIEW::DockWidget , BALL::VIEW::Scene
• setWidth() : BALL::CreateSpectrumProcessor , BALL::Peak< PositionType > , BALL::TBox3< T > , BALL::VIEW::FrameBufferFormat
• setWildcards() : BALL::GAFFCESParser::CESwildcardsConnectionPredicate , BALL::GAFFCESParser::CESwildcardsPredicate
• setWorkingDir() : BALL::VIEW::MainControl , BALL::VIEW::ModularWidget
• setWorkingDirFromFilename_() : BALL::VIEW::ModularWidget
• setXDefaultValues() : BALL::CubicSpline2D
• setXLowerBounds() : BALL::CubicSpline2D
• setXLowerDerivatives() : BALL::CubicSpline2D
• setXTol() : BALL::LineSearch
• setXUpperBounds() : BALL::CubicSpline2D
• setXUpperDerivatives() : BALL::CubicSpline2D
• setYDefaultValue() : BALL::CubicSpline2D
• setYLowerBound() : BALL::CubicSpline2D
• setYLowerDerivative() : BALL::CubicSpline2D
• setYUpperBound() : BALL::CubicSpline2D
• setYUpperDerivative() : BALL::CubicSpline2D
• setZEType() : BALL::SmartsParser::SPBond , BALL::SmilesParser::SPBond
• setZScore() : BALL::CrystalInfo
• sg_entry_ : BALL::VIEW::GenerateCrystalDialog
• sg_list_ : BALL::VIEW::GenerateCrystalDialog
• sg_symops_ : BALL::CrystalInfo
• SHANNO : BALL::ConjugateGradientMinimizer
• share_from_ : BALL::VIEW::GLOffscreenTarget
• shared_bonds : BALL::RingAnalyser::Ring
• shared_handlers_ : BALL::PluginManager
• sheet_ : BALL::SecondaryStructureProcessor
• sheet_ID : BALL::PDB::RecordSHEET
• sheet_list_ : BALL::PDBFile
• sheet_records : BALL::PDB::BookKeeping
• shift() : BALL::TContourSurface< T >::Cube , BALL::TriangulatedSurface
• SHIFT : BALL::VIEW::HotkeyTable
• shift_map_ : BALL::RandomCoilShiftProcessor
• shift_s_ : BALL::ShiftedLVMMMinimizer
• shift_units : BALL::NMRStarFile::ShiftReferenceElement
• shift_value : BALL::NMRStarFile::NMRAtomData , BALL::NMRStarFile::ShiftReferenceElement
• shifted_direction_ : BALL::ShiftedLVMMMinimizer
• ShiftedLVMMMinimizer() : BALL::ShiftedLVMMMinimizer
• ShiftHyperSurface_() : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• ShiftModel() : BALL::ShiftModel
• ShiftModel1D() : BALL::ShiftModel1D
• ShiftModel2D() : BALL::ShiftModel2D
• ShiftModule() : BALL::ShiftModule
• ShiftReferenceElement() : BALL::NMRStarFile::ShiftReferenceElement
• ShiftReferenceSet() : BALL::NMRStarFile::ShiftReferenceSet
• shifts : BALL::NMRStarFile::MolecularSystem::ChemicalUnit
• ShiftXwise_hydrogen_bonds_computation_ : BALL::HBondShiftProcessor
• shininess : BALL::VIEW::Stage::Material
• shininess_ : BALL::VIEW::Stage
• shininessFactorChanged() : BALL::VIEW::MaterialSettings
• SHORT : BALL::VIEW::PubChemDialog
• shortcut_ : BALL::VIEW::TestFramework
• shortcut_keys_ : BALL::VIEW::ShortcutRegistry
• shortcut_registry_ : BALL::VIEW::MainControl
• shortcutChanged() : BALL::VIEW::ShortcutRegistry , BALL::VIEW::ShortcutTableView
• shortcutChanged_() : BALL::VIEW::ShortcutDialog
• ShortcutDialog() : BALL::VIEW::ShortcutDialog
• ShortcutRegistry() : BALL::VIEW::ShortcutRegistry
• shortcuts_ : BALL::VIEW::ShortcutRegistry
• ShortcutTableModel() : BALL::VIEW::ShortcutTableModel
• ShortcutTableView() : BALL::VIEW::ShortcutTableView
• show() : BALL::Mainframe , BALL::QSAR::RegressionModel , BALL::VIEW::AssignBondOrderResultsDialog , BALL::VIEW::DemoTutorialDialog , BALL::VIEW::DisplayProperties , BALL::VIEW::DockProgressDialog , BALL::VIEW::DockResultDialog , BALL::VIEW::GeometricFitDialog , BALL::VIEW::LabelDialog , BALL::VIEW::MainControl , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::Preferences , BALL::VIEW::PubChemDialog , BALL::VIEW::SnapshotVisualisationDialog , BALL::VIEW::StereoSettingsDialog , BALL::VIEW::UndoManagerDialog
• show_coordinate_system_ : BALL::VIEW::Stage
• show_fps_ : BALL::VIEW::Scene
• SHOW_HYDROGENS : BALL::SDGenerator::Default , BALL::SDGenerator::Option , BALL::VIEW::SDWidget::Default , BALL::VIEW::SDWidget::Option
• SHOW_IDENTICAL_LIGANDS_WARNING : BALL::DockResultFile
• show_light_sources_ : BALL::VIEW::Renderer , BALL::VIEW::Scene
• show_preview_ : BALL::VIEW::Renderer
• show_ruler_ : BALL::VIEW::RenderSetup
• show_selection_infos_ : BALL::VIEW::CompositeMessage
• show_ss_ : BALL::VIEW::MolecularControl
• show_ss_id_ : BALL::VIEW::MolecularControl
• show_window_enty_ : BALL::VIEW::ModularWidget
• showAmberForceFieldOptions() : BALL::VIEW::MolecularStructure
• showAngle() : BALL::VIEW::MolecularControl
• showAtomOverview() : BALL::VIEW::MolecularControl
• showAtomOverviewForSelection() : BALL::VIEW::MolecularControl
• showBondOrderAssignmentResults() : BALL::VIEW::MolecularStructure
• showCharmmForceFieldOptions() : BALL::VIEW::MolecularStructure
• showClassDocu() : BALL::VIEW::PyWidget
• showCompletion() : BALL::VIEW::PyWidget
• showContextMenu() : BALL::VIEW::PyWidget , BALL::VIEW::Scene
• showCoordinateSystem() : BALL::VIEW::Stage
• showDemo() : BALL::VIEW::DemoTutorialDialog
• ShowDisplayPropertiesMessage() : BALL::VIEW::ShowDisplayPropertiesMessage
• showDistance() : BALL::VIEW::MolecularControl
• showDockingOptions() : BALL::VIEW::DockResultDialog
• showDockResult() : BALL::VIEW::DockResultController
• showDocumentation() : BALL::VIEW::PyWidget
• showDocumentationFor() : BALL::VIEW::HelpViewer
• showDocumentationForObject() : BALL::VIEW::HelpViewer
• showEditContextMenu() : BALL::VIEW::PyWidget
• showEntry() : BALL::VIEW::Preferences
• showExportPNGDialog() : BALL::VIEW::Scene
• showExportVRMLDialog() : BALL::VIEW::Scene
• showFilename() : BALL::VIEW::MolecularControl
• showGuestContextMenu() : BALL::VIEW::DatasetControl , BALL::VIEW::DockWidget , BALL::VIEW::GeometricControl , BALL::VIEW::LogView , BALL::VIEW::MolecularControl
• showHelp() : BALL::VIEW::HelpViewer , BALL::VIEW::ModularWidget , BALL::VIEW::Preferences
• showHelp_() : BALL::VIEW::PyWidget
• showHelpFor() : BALL::VIEW::HelpViewer
• ShowHelpMessage() : BALL::VIEW::ShowHelpMessage
• showInfos() : BALL::VIEW::Scene
• showLightSources() : BALL::VIEW::Renderer
• showLightSourcesEnabled() : BALL::VIEW::Scene
• showMMFF94ForceFieldOptions() : BALL::VIEW::MolecularStructure
• showObjects() : BALL::VIEW::CanvasWidget
• showOnlyInLogView() : BALL::VIEW::LogEvent
• showOnlySelection() : BALL::VIEW::AtomOverview::ApplyProcessor , BALL::VIEW::AtomOverview::OverviewProcessor , BALL::VIEW::AtomOverview
• showRaytracingTutorial() : BALL::VIEW::DemoTutorialDialog
• showRuler() : BALL::VIEW::RenderSetup
• showScoringOptions_() : BALL::VIEW::DockResultDialog
• showSelected() : BALL::VIEW::AtomDistanceColorProcessor
• showSelectionInfos() : BALL::VIEW::CompositeMessage
• showSelectorHelp() : BALL::VIEW::MolecularControl
• showSnapshot() : BALL::VIEW::DockResultDialog
• showStackPage() : BALL::VIEW::PreferencesEntry
• showText() : BALL::VIEW::Scene
• showTutorial() : BALL::VIEW::DemoTutorialDialog
• showViewPoint_() : BALL::VIEW::Scene
• shrink() : BALL::TriangulatedSurface
• Si : BALL::Element
• SideChainOptimizer : BALL::ScoringFunction , BALL::SideChainOptimizer
• SideChainPlacementProcessor() : BALL::SideChainPlacementProcessor
• sig11 : BALL::PDB::RecordSIGUIJ
• sig12 : BALL::PDB::RecordSIGUIJ
• sig13 : BALL::PDB::RecordSIGUIJ
• sig22 : BALL::PDB::RecordSIGUIJ
• sig23 : BALL::PDB::RecordSIGUIJ
• sig33 : BALL::PDB::RecordSIGUIJ
• sig_w : BALL::CharmmEEF1::Values
• sig_w_ : BALL::CharmmEEF1
• SIGNED_INT_CHANNEL : BALL::VIEW::ChannelFormat
• silent_ : BALL::VIEW::PyWidget
• SILICIUM : BALL::Element
• SILICON : BALL::Element
• SILVER : BALL::Element
• SIM_CUTOFF : BALL::BinaryFingerprintMethods::Default , BALL::BinaryFingerprintMethods::Option
• SIMPLE : BALL::AStarBondOrderStrategy::Heuristic , BALL::PartialBondOrderAssignment
• SimpleBase() : BALL::SimpleBase
• SimpleBox() : BALL::VIEW::SimpleBox
• SimpleDownloader() : BALL::SimpleDownloader
• SimpleExperiment1D() : BALL::SimpleExperiment1D
• SIMPLICIAL_TYPE : BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound >
• simulate() : BALL::MolecularDynamics
• simulateIterations() : BALL::CanonicalMD , BALL::MicroCanonicalMD , BALL::MolecularDynamics
• simulateTime() : BALL::MolecularDynamics
• simulation_icon_ : BALL::VIEW::MainControl
• simulation_running_xpm_ : BALL::VIEW::MainControl
• simulation_stoped_xpm_ : BALL::VIEW::MainControl
• simulation_thread_ : BALL::VIEW::MainControl
• SimulationThread : BALL::VIEW::MainControl , BALL::VIEW::SimulationThread
• SINGLE : BALL::SmartsParser::SPBond
• SINGLE__CHI : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• SINGLE__DISCRETE : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• SINGLE__REAL : BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_
• SINGLE_BOND : BALL::GAFFCESParser::APSMatcher
• SINGLE_BOND_TO_PARENT : BALL::GAFFCESParser::APSMatcher
• SINGLE_DOWN : BALL::SmartsParser::SPBond
• SINGLE_DOWN_OR_ANY : BALL::SmartsParser::SPBond
• SINGLE_OR_AROMATIC : BALL::SmartsParser::SPBond
• single_pick_ : BALL::VIEW::GLRenderer
• SINGLE_UP : BALL::SmartsParser::SPBond
• SINGLE_UP_OR_ANY : BALL::SmartsParser::SPBond
• SingleAmberTorsion() : BALL::AmberTorsion::SingleAmberTorsion
• SingleCharmmTorsion() : BALL::CharmmTorsion::SingleCharmmTorsion
• SingleValues() : BALL::CosineTorsion::SingleValues
• singular_ : BALL::RSEdge , BALL::RSFace
• singular_edges_ : BALL::SolventExcludedSurface
• SingularEdgeIterator : BALL::SolventExcludedSurface
• SingularMatrixError() : BALL::QSAR::Exception::SingularMatrixError
• Site : BALL::Enumerator< Container, SiteIterator, Variant >
• site_records : BALL::PDB::BookKeeping
• SiteList : BALL::Enumerator< Container, SiteIterator, Variant >
• size() : BALL::ConformationSet , BALL::FPTBondOrderStrategy::DPTable_ , BALL::HashMap< Key, T > , BALL::HashSet< Key > , BALL::PDBRecords , BALL::PoseClustering::ClusterProperties , BALL::String , BALL::Substring , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::ShortcutRegistry
• size_ : BALL::Exception::IndexOverflow , BALL::Exception::IndexUnderflow , BALL::Exception::InvalidSize , BALL::Exception::OutOfMemory , BALL::Exception::SizeUnderflow , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• size_type : BALL::HashSet< Key > , BALL::PDBRecords , BALL::String , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::VIEW::CompositeManager
• sizeHint() : BALL::VIEW::ColorButton , BALL::VIEW::DockableRegularData1DWidget , BALL::VIEW::DockableRegularData2DWidget , BALL::VIEW::SDWidget , BALL::VIEW::TextEditorWidget::LineNumbers
• SizeOfSSSR() : BALL::SizeOfSSSR
• SizeType : BALL::PDBRecords
• SizeUnderflow() : BALL::Exception::SizeUnderflow
• SizeVector : BALL::UCK
• sizeX() : BALL::ScoreGridSet
• sizeX_ : BALL::Rescoring3D
• sizeY() : BALL::ScoreGridSet
• sizeY_ : BALL::Rescoring3D
• sizeZ() : BALL::ScoreGridSet
• sizeZ_ : BALL::Rescoring3D
• skipCurrentRecord() : BALL::PDBFile
• skipFrame() : BALL::TRRFile
• skipLines() : BALL::LineBasedFile
• skipped_records_ : BALL::PDBInfo
• SLATER_KIRKWOOD_FORMAT : BALL::LennardJones
• SLAVE_PATH : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• slices : BALL::VIEW::GridVisualisation
• SLICES : BALL::VIEW::GridVisualisation
• SLICKEnergy() : BALL::SLICKEnergy
• SLICKScore() : BALL::SLICKScore
• sliderDragEnded_() : BALL::VIEW::SnapshotVisualisationDialog
• sliderDragStarted_() : BALL::VIEW::SnapshotVisualisationDialog
• sliderMovedToPos() : BALL::VIEW::SnapshotVisualisationDialog
• slides_ : BALL::VIEW::AddBackboneModel
• slides_angle_ : BALL::VIEW::AddBackboneModel
• slinkInner_() : BALL::PoseClustering
• slotCancel() : BALL::VIEW::GenerateCrystalDialog
• slotDownload() : BALL::VIEW::DownloadElectronDensity , BALL::VIEW::DownloadPDBFile
• slotOk() : BALL::VIEW::GenerateCrystalDialog
• Sm : BALL::Element
• smallX : BALL::VIEW::VRMLRenderer
• smallY : BALL::VIEW::VRMLRenderer
• smallZ : BALL::VIEW::VRMLRenderer
• SMART_MATCHING : BALL::HybridisationProcessor::Method
• smart_names_ : BALL::MolecularSimilarity
• SMART_OBJECT : BALL::NamedProperty
• smart_pointer_list_ : BALL::PersistenceManager
• SmartPointerList : BALL::PersistenceManager
• smarts_ : BALL::MolecularSimilarity
• smarts_edit_ : BALL::VIEW::MolecularControl
• SmartsMatcher() : BALL::SmartsMatcher
• SmartsParser() : BALL::SmartsParser
• SMARTSPredicate() : BALL::SMARTSPredicate
• smiles : BALL::VIEW::PubChemDialog::ParsedResult_
• smiles_parser_ : BALL::VIEW::PubChemDialog
• SmilesParser() : BALL::SmilesParser
• smooth_lines_ : BALL::VIEW::GLRenderer
• smoothCFSAngle_() : BALL::SDGenerator
• Sn : BALL::Element
• snap : BALL::PoseClustering::PosePointer
• snap_shot_manager_ : BALL::VIEW::SnapshotVisualisationDialog
• SnapShot() : BALL::SnapShot
• snapshot_ : BALL::EnergyMinimizer
• snapshot_buffer_ : BALL::SnapShotManager
• SNAPSHOT_FREQUENCY : BALL::EnergyMinimizer::Default , BALL::EnergyMinimizer::Option , BALL::MolecularDynamics::Default , BALL::MolecularDynamics::Option
• snapshot_frequency_ : BALL::EnergyMinimizer , BALL::MolecularDynamics
• snapshot_interface_ : BALL::VIEW::UndoManagerDialog
• snapshot_manager_ptr_ : BALL::MolecularDynamics
• snapshot_order_ : BALL::ConformationSet , BALL::DockResult::Scoring_
• snapShotInputTest() : BALL::VIEW::SnapshotVisualisationDialog
• SnapShotManager() : BALL::SnapShotManager
• SnapshotManagerInterface() : BALL::VIEW::SnapshotManagerInterface
• SnapshotVisualisationDialog() : BALL::VIEW::SnapshotVisualisationDialog
• SNBModel() : BALL::QSAR::SNBModel
• SODIUM : BALL::Element
• soffsetf1_ : BALL::Bruker2DFile
• soffsetf2_ : BALL::Bruker2DFile
• SOLUTE_DC : BALL::FDPB::Default , BALL::FDPB::Option
• solution_number_ : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_ , BALL::VIEW::AssignBondOrderResultsDialog
• solution_systems_ : BALL::VIEW::AssignBondOrderResultsDialog
• solutions_ : BALL::AssignBondOrderProcessor , BALL::Kekuliser
• Solvation() : BALL::Solvation
• SOLVATION_CUTOFF : BALL::CharmmFF::Default , BALL::CharmmFF::Option
• SOLVATION_CUTON : BALL::CharmmFF::Default , BALL::CharmmFF::Option
• solvation_energy_ : BALL::CharmmNonBonded
• solvation_parameters : BALL::Solvation
• solvation_volumes : BALL::Solvation
• solve() : BALL::FDPB
• solvent_ : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• SOLVENT_ACCESSIBLE_SURFACE : BALL::SurfaceProcessor
• solvent_atoms_ : BALL::SolventDescriptor , BALL::SolventParameter
• SOLVENT_DC : BALL::FDPB::Default , BALL::FDPB::Option
• solvent_descriptor_ : BALL::SolventParameter
• SOLVENT_DESCRIPTOR_FILE : BALL::NonpolarSolvation::Default , BALL::NonpolarSolvation::Option
• SOLVENT_EXCLUDED_SURFACE : BALL::SurfaceProcessor
• SOLVENT_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• SOLVENT_NUMBER_DENSITY : BALL::NonpolarSolvation::Default , BALL::NonpolarSolvation::Option , BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::Default , BALL::PCMCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::Option
• SolventAccessibleSurface : BALL::ReducedSurface , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SolventAccessibleSurface
• SolventAtomDescriptor() : BALL::SolventAtomDescriptor
• SolventDescriptor() : BALL::SolventDescriptor
• SolventExcludedSurface : BALL::ReducedSurface , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::SolventExcludedSurface
• SolventParameter() : BALL::SolventParameter
• sort() : BALL::ResidueRotamerSet , BALL::Result , BALL::RotamerLibrary
• sortBy() : BALL::DockResult
• sorted_by_ : BALL::DockResult
• sorted_edges : BALL::FPTBondOrderStrategy::DPBackTrackingCombiner_
• SortedPosition2() : BALL::SortedPosition2
• SortedPosition3() : BALL::SortedPosition3
• sortSelectedAtomVector_() : BALL::ForceField
• sortTable() : BALL::VIEW::DockResultDialog
• source_ : BALL::EdgeItem< Node, Edge >
• sources : BALL::PDB::RecordSOURCE
• SP : BALL::SmilesParser
• sp_atom_ : BALL::SmartsParser::SPNode
• space_group : BALL::PDB::RecordCRYST1::UnitCell , BALL::PDB::Structure::UnitCellInfo
• space_group_ : BALL::CCP4File , BALL::CrystalInfo
• SPACE_GROUP_FILE : BALL::CrystalGenerator::Default , BALL::CrystalGenerator::Option , BALL::CrystalInfo::Default , BALL::CrystalInfo::Option
• SpaceGroupParameters() : BALL::SpaceGroupParameters
• SPACING : BALL::FDPB::Default , BALL::FDPB::Option
• spacing_ : BALL::FDPB , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::TContourSurface< T >::Cube , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType >
• SPAtom : BALL::SmartsMatcher , BALL::SmartsParser::SPAtom , BALL::SmilesParser::SPAtom
• SPBond : BALL::SmartsMatcher , BALL::SmartsParser::SPBond , BALL::SmilesParser::SPBond
• SPBondOrder : BALL::SmartsParser::SPBond
• specific_model_ID : BALL::PDB::RecordCISPEP
• specificSetup() : BALL::AmberFF , BALL::CanonicalMD , BALL::CharmmFF , BALL::ConjugateGradientMinimizer , BALL::EnergyMinimizer , BALL::ForceField , BALL::MicroCanonicalMD , BALL::MMFF94 , BALL::MolecularDynamics , BALL::ShiftedLVMMMinimizer , BALL::SteepestDescentMinimizer , BALL::StrangLBFGSMinimizer
• specificSetup_() : BALL::AtomTyper , BALL::PluginHandler , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::ModularWidgetPluginHandler , BALL::VIEW::PluginDialog
• specificShutdown_() : BALL::PluginHandler , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::ModularWidgetPluginHandler , BALL::VIEW::PluginDialog
• Spectrum() : BALL::Spectrum< DataT, PeakT, PositionT >
• spectrum_ : BALL::Bruker1DFile , BALL::Bruker2DFile
• SPECTRUM_TYPE : BALL::ShiftModel1D , BALL::ShiftModel2D
• specular_ : BALL::VIEW::Stage
• specular_color : BALL::VIEW::Stage::Material
• specular_intensity : BALL::VIEW::Stage::Material
• specularityFactorChanged() : BALL::VIEW::MaterialSettings
• SPEdge : BALL::SmartsMatcher , BALL::SmartsParser::SPEdge
• SPEED_OF_LIGHT : BALL::Constant
• Sphere() : BALL::VIEW::Sphere
• sphere_ : BALL::SASFace
• sphere_list_ : BALL::VIEW::GLRenderer
• sphere_template_ : BALL::VIEW::XML3DRenderer
• spheres_ : BALL::SurfaceProcessor
• spheric_faces_ : BALL::SolventExcludedSurface
• SphericFaceIterator : BALL::SolventExcludedSurface
• SPIRO : BALL::RingAnalyser
• splice() : BALL::AtomContainer , BALL::Chain , BALL::Composite , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System
• spliceAfter() : BALL::AtomContainer , BALL::Chain , BALL::Composite , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System
• spliceBefore() : BALL::AtomContainer , BALL::Chain , BALL::Composite , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System
• split() : BALL::String , BALL::VIEW::ExportGeometryDialog
• splitIntoMolecules() : BALL::ConnectedComponentsProcessor
• splitMethodChanged() : BALL::VIEW::ModifyRepresentationDialog
• splitQuoted() : BALL::String
• splitSphericFaces() : BALL::SolventExcludedSurface
• SPNode : BALL::SmartsMatcher , BALL::SmartsParser::SPNode
• spointnumf1_ : BALL::Bruker2DFile
• spointnumf2_ : BALL::Bruker2DFile
• sq() : BALL::QSAR::Statistics
• sqrt_density_ : BALL::SASTriangulator , BALL::SESTriangulator
• square_distance_ : BALL::VIEW::ModifyRepresentationDialog
• SQUARE_ROOT : BALL::ShiftedLVMMMinimizer
• squared_distance_ : BALL::FragmentDistanceCollector
• SquareFunction() : BALL::SquareFunction< Function, DataType >
• Sr : BALL::Element
• ss_ : BALL::VIEW::AddBackboneModel
• ssbond_correction_ : BALL::EmpiricalHSShiftProcessor
• ssbond_list_ : BALL::PDBFile
• ssbonds : BALL::PDB::Structure
• sslErrors() : BALL::SimpleDownloaderHelper::BasicHelper
• sssr_ : BALL::GAFFTypeProcessor , BALL::SmartsMatcher , BALL::SmartsParser
• stack_pages_ : BALL::VIEW::PreferencesEntry
• StackPages : BALL::VIEW::PreferencesEntry
• Stage() : BALL::VIEW::Stage
• stage_ : BALL::VIEW::LightSettings , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::Scene
• stage_settings_ : BALL::VIEW::Scene
• StageSettings() : BALL::VIEW::StageSettings
• stamp() : BALL::Composite , BALL::TimeStamp
• StampType : BALL::Composite
• standard_bond_exists : BALL::MMFF94StretchParameters::BondData
• STANDARD_BOND_LENGTH : BALL::SDGenerator::Default , BALL::SDGenerator::Option
• standard_occupancy_deviation : BALL::PDB::RecordSIGATM
• standard_residue_name : BALL::PDB::RecordMODRES
• standard_temperature_deviation : BALL::PDB::RecordSIGATM
• standard_vector_deviation : BALL::PDB::RecordSIGATM
• standardized_moments : BALL::Spectrum< DataT, PeakT, PositionT >
• STANNUM : BALL::Element
• start() : BALL::AddHydrogenProcessor , BALL::AromaticityProcessor , BALL::AssignBondOrderProcessor , BALL::AssignChargeProcessor , BALL::AssignRadiusProcessor , BALL::BinaryProcessor< T1, T2 > , BALL::BoundingBoxProcessor , BALL::BuildBondsProcessor , BALL::CIFFile::Datablock , BALL::CIFFile::SaveFrame , BALL::ConnectedComponentsProcessor , BALL::ConstBinaryProcessor< T1, T2 > , BALL::ConstUnaryProcessor< T > , BALL::CreateSpectrumProcessor , BALL::DisulfidBondProcessor , BALL::DockingAlgorithm , BALL::EFShiftProcessor , BALL::EmpiricalHSShiftProcessor , BALL::EnergyProcessor , BALL::EvolutionaryDocking , BALL::FragmentDB::BuildBondsProcessor , BALL::FragmentDB::NormalizeNamesProcessor , BALL::FragmentDistanceCollector , BALL::GeneticAlgorithm , BALL::GeometricCenterProcessor , BALL::GeometricFit , BALL::HaighMallionShiftProcessor , BALL::HBondProcessor , BALL::HBondShiftProcessor , BALL::HybridisationProcessor , BALL::IMGDock , BALL::JohnsonBoveyShiftProcessor , BALL::MMFF94ChargeProcessor , BALL::ReconstructFragmentProcessor , BALL::ResidueChecker , BALL::RingAnalyser , BALL::RuleProcessor , BALL::Selector , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::ShiftModel , BALL::ShiftModule , BALL::SideChainPlacementProcessor , BALL::SimpleExperiment1D , BALL::SurfaceProcessor , BALL::Timer , BALL::UnaryProcessor< T > , BALL::VIEW::AddBackboneModel , BALL::VIEW::ColorByGridProcessor , BALL::VIEW::ColorProcessor , BALL::VIEW::FileObserver , BALL::VIEW::InterpolateColorProcessor , BALL::VIEW::PositionColorProcessor , BALL::VIEW::ResidueNumberColorProcessor
• start_ : BALL::CCP4File , BALL::DSN6File , BALL::TContour< T >
• start_action_ : BALL::VIEW::FileObserver
• start_animation_action_ : BALL::VIEW::Scene
• start_log_ : BALL::PyInterpreter
• start_recording : BALL::VIEW::TestFramework
• startAccepting() : BALL::TCPServer
• startAnimation() : BALL::VIEW::Scene
• startChildPredicates() : BALL::GAFFCESParser
• startContinuousLoop() : BALL::VIEW::Scene
• startDefinition() : BALL::VIEW::GLDisplayList
• startDock() : BALL::IMGDock
• startDocking() : BALL::VIEW::DockingController
• startDriver() : BALL::VIEW::InputPlugin
• started_startup_script_ : BALL::VIEW::PyWidget
• STARTED_UPDATE : BALL::VIEW::RepresentationMessage
• startEditorDialog() : BALL::VIEW::PDBInfoEditorWidget
• starting_configuration_ : BALL::AssignBondOrderProcessor
• startInterpreter() : BALL::VIEW::PyWidget
• startLoop() : BALL::CIFFile::Item
• startOutput() : BALL::PersistenceManager
• startPlugin() : BALL::PluginHandler , BALL::PluginManager
• startRecording_() : BALL::VIEW::EditSingleShortcut
• startRendering() : BALL::VIEW::RenderSetup , BALL::VIEW::RepresentationManager
• startsWith() : BALL::LineBasedFile
• startTest() : BALL::VIEW::TestFramework
• startup_script_ : BALL::VIEW::PyWidget
• state : BALL::CIFFile , BALL::ExpressionParser , BALL::GAFFCESParser , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::SmartsParser , BALL::SmilesParser , BALL::TreeWidthImplementation< EditableGraph >::QuickBB< Lowerbound, Upperbound > , BALL::VIEW::RunPythonThread
• static_ligand_energy_ : BALL::ScoringFunction
• static_ligand_fragments_ : BALL::ScoringFunction
• static_members : BALL::MOL2File::SetStruct
• static_residues_hashgrid_ : BALL::ScoringFunction
• statistic : BALL::QSAR::FeatureSelectionConfiguration , BALL::QSAR::PredictionConfiguration , BALL::QSAR::ValidationConfiguration
• statistic_name : BALL::QSAR::FeatureSelectionConfiguration , BALL::QSAR::PredictionConfiguration , BALL::QSAR::ValidationConfiguration
• Statistics() : BALL::QSAR::Statistics
• status : BALL::MOL2File::SetStruct , BALL::RSComputer::ProbePosition
• status_ : BALL::ResidueChecker
• STATUS_INSIDE : BALL::RSComputer
• STATUS_NOT_OK : BALL::RSComputer
• STATUS_NOT_TESTED : BALL::RSComputer
• STATUS_OK : BALL::RSComputer
• STATUS_ON_SURFACE : BALL::RSComputer
• STATUS_UNKNOWN : BALL::RSComputer
• stddev_ : BALL::ScoringComponent
• stddev_out_ : BALL::Rescoring
• SteepestDescentMinimizer() : BALL::SteepestDescentMinimizer
• step_ : BALL::AStarBondOrderStrategy , BALL::EnergyMinimizer
• step_number_of_starting_time_ : BALL::DCDFile
• STEP_WIDTH : BALL::IMGDock::Default , BALL::IMGDock::Option
• step_width_ : BALL::RotamerLibrary
• stepFourier_ : BALL::TFFT1D< ComplexTraits >
• stepFourierX_ : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• stepFourierY_ : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• stepFourierZ_ : BALL::TFFT3D< ComplexTraits >
• stepPhys_ : BALL::TFFT1D< ComplexTraits >
• stepPhysX_ : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• stepPhysY_ : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• stepPhysZ_ : BALL::TFFT3D< ComplexTraits >
• steps() : BALL::IMGDock
• steps_ : BALL::VIEW::MDSimulationThread
• steps_between_saves_ : BALL::DCDFile
• steps_between_updates_ : BALL::VIEW::SimulationThread
• stepwiseSelection() : BALL::QSAR::FeatureSelection
• stereo : BALL::MOLFile::BondStruct
• stereo_ : BALL::VIEW::Renderer
• stereo_camera_ : BALL::VIEW::Scene
• stereo_care_box : BALL::MOLFile::AtomStruct
• stereo_delta_ : BALL::VIEW::GLRenderWindow
• stereo_frustum_conversion_height_ : BALL::VIEW::Renderer
• stereo_frustum_conversion_width_ : BALL::VIEW::Renderer
• stereo_left_eye_ : BALL::VIEW::Scene
• stereo_mode_ : BALL::VIEW::InteractionModeManager
• stereo_right_eye_ : BALL::VIEW::Scene
• STEREO_SETUP : BALL::VIEW::RenderSetup
• stereo_setup_ : BALL::VIEW::RenderSetup
• stereoBufferSupportTest() : BALL::VIEW::Scene
• StereoMode : BALL::VIEW::Renderer
• stereoModeChanged() : BALL::VIEW::StageSettings
• stereoScreenChanged() : BALL::VIEW::StageSettings
• StereoSettingsDialog() : BALL::VIEW::StereoSettingsDialog
• steric : BALL::PLP::NonBondedPairData
• STIBIUM : BALL::Element
• stickRadiusChanged() : BALL::VIEW::ModelSettingsDialog
• sticks_ : BALL::Spectrum< DataT, PeakT, PositionT >
• still_to_notify_ : BALL::VIEW::RepresentationManager
• STL_RENDERER : BALL::VIEW::RenderSetup
• STLRenderer() : BALL::VIEW::STLRenderer
• stop() : BALL::Timer , BALL::VIEW::FileObserver , BALL::VIEW::RenderSetup
• stop_() : BALL::VIEW::SnapshotVisualisationDialog
• stop_action_ : BALL::VIEW::FileObserver
• stop_animation_ : BALL::VIEW::Scene
• stop_recording : BALL::VIEW::TestFramework
• stop_script_ : BALL::VIEW::PyWidget
• stop_simulation_ : BALL::VIEW::MainControl
• stop_simulation_action_ : BALL::VIEW::MainControl
• stopAnimation() : BALL::VIEW::Scene
• stopContinuousLoop() : BALL::VIEW::Scene
• stopedSimulation() : BALL::VIEW::MainControl
• stopedSimulation_() : BALL::VIEW::MainControl
• stopPlugin() : BALL::PluginHandler , BALL::PluginManager
• stopRecording_() : BALL::VIEW::EditSingleShortcut
• stopSimulation() : BALL::VIEW::MainControl
• stopTest() : BALL::VIEW::TestFramework
• store_interactions_ : BALL::ScoringFunction
• store_interactions_disabled_ : BALL::Atom
• store_interactions_phC_only_ : BALL::ScoringFunction
• STORE_NN : BALL::BinaryFingerprintMethods::Default , BALL::BinaryFingerprintMethods::Option
• STORE_SKIPPED_RECORDS : BALL::PDBFile::Default , BALL::PDBFile::Option
• store_skipped_records_ : BALL::PDBFile
• storeColor_() : BALL::VIEW::POVRenderer , BALL::VIEW::XML3DRenderer
• storeConnections_() : BALL::FragmentDB::BuildBondsProcessor
• stored_camera_ : BALL::VIEW::Scene
• stored_s_ : BALL::StrangLBFGSMinimizer
• stored_y_ : BALL::StrangLBFGSMinimizer
• storeEvent() : BALL::VIEW::TestFramework
• storeGradientEnergy() : BALL::EnergyMinimizer
• storeInteractionsEnabled() : BALL::ScoringFunction
• storeMolecule() : BALL::MolDB
• storeOriginalConfiguration_() : BALL::AssignBondOrderProcessor
• storeRepresentations() : BALL::VIEW::RepresentationManager
• storeResult() : BALL::MolDB
• storeScript_() : BALL::VIEW::PyWidget
• storeSnapShotReferences_() : BALL::PoseClustering
• storeValues() : BALL::VIEW::OpenSavePreferences , BALL::VIEW::PreferencesEntry
• storeViewPoint() : BALL::VIEW::Scene
• stptol_ : BALL::LineSearch
• STRAND : BALL::SecondaryStructure , BALL::VIEW::AddCartoonModel
• strand_height_ : BALL::VIEW::AddCartoonModel
• strand_number : BALL::PDB::RecordSHEET
• strand_width_ : BALL::VIEW::AddCartoonModel
• StrangLBFGSMinimizer() : BALL::StrangLBFGSMinimizer
• strategies_ : BALL::AssignBondOrderProcessor
• stream : BALL::LogStreamBuf::StreamStruct
• stream_ : BALL::LogStreamNotifier
• STREAM_HEADER : BALL::XDRPersistenceManager
• stream_list_ : BALL::LogStreamBuf
• STREAM_TRAILER : BALL::XDRPersistenceManager
• StreamStruct() : BALL::LogStreamBuf::StreamStruct
• stretch_ : BALL::StretchComponent
• stretch_i_j : BALL::MMFF94StretchBend::StretchBend
• stretch_j_k : BALL::MMFF94StretchBend::StretchBend
• stretch_parameters_ : BALL::StretchComponent
• StretchBendMap : BALL::MMFF94StretchBendParameters
• StretchComponent() : BALL::StretchComponent
• StretchMap : BALL::MMFF94StretchParameters
• STRICT_LINE_CHECKING : BALL::PDBFile::Default , BALL::PDBFile::Option
• strict_line_checking_ : BALL::PDBFile
• stride_ : BALL::VIEW::BufferedRenderer
• STRING : BALL::JCAMPFile , BALL::NamedProperty
• string : BALL::PDB::RecordTypeFormat
• String() : BALL::String , BALL::Substring
• string_format : BALL::VIEW::PythonHighlighter
• string_pattern : BALL::VIEW::PythonHighlighter
• string_value : BALL::JCAMPFile::JCAMPValue
• StringEditorWidget() : BALL::VIEW::StringEditorWidget
• StringHashMap() : BALL::StringHashMap< Value >
• stringToWildcard_ : BALL::GAFFCESParser::CESPredicate
• STRONGLY_OVERLAPPING_ATOMS : BALL::ResidueChecker
• STRONTIUM : BALL::Element
• STRUCTURE_BASED : BALL::HybridisationProcessor::Method
• StructureMapper() : BALL::StructureMapper
• StructurePreparer() : BALL::StructurePreparer
• structures_ : BALL::ConformationSet
• sub_type : BALL::MOL2File::SetStruct , BALL::MOL2File::SubstructureStruct
• subcategories_ : BALL::Options
• subdivideTriangle_() : BALL::VIEW::GLRenderer
• subject_length : BALL::NMRStarFile::MonomericPolymer::HomologDB
• submission_date : BALL::NMRStarFile::EntryInformation
• substance_names_ : BALL::QSAR::Model , BALL::QSAR::QSARData
• substances_names_ : BALL::QSAR::Validation
• substitute() : BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::String
• substituteAll() : BALL::String
• substr() : BALL::String
• Substring : BALL::String , BALL::Substring
• substructure : BALL::MOL2File::AtomStruct
• substructure_name : BALL::MOL2File::AtomStruct
• substructure_type : BALL::MOL2File::SubstructureStruct
• substructures_ : BALL::MOL2File
• Subtraction() : BALL::Subtraction< First, Second, DataType >
• successor() : BALL::RingAnalyser::Ring
• suffix_ : BALL::VIEW::DownloadPDBFile
• SULFUR : BALL::Element
• sulfur_bridges_ : BALL::DisulfidBondProcessor
• SULPHUR : BALL::Element
• summary_ : BALL::SecondaryStructureProcessor
• SUPERPOSE_LIGAND : BALL::IMGDock::Default , BALL::IMGDock::Option
• supported_formats : BALL::ParameterDescription
• supports() : BALL::VIEW::BufferedRenderer , BALL::VIEW::RaytracingRenderer
• supportsNamingScheme() : BALL::Peptides::NameConverter
• supportsPseudoAtomNamingScheme() : BALL::Peptides::NameConverter
• surface_ : BALL::NumericalSAS , BALL::SurfaceProcessor
• SURFACE__EXTERNAL : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• SURFACE__SAS : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• SURFACE__SES : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• SURFACE__UNKNOWN : BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor
• surface_drawing_precision_ : BALL::VIEW::ModelProcessor , BALL::VIEW::Representation
• SURFACE_FILENAME : BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• SURFACE_TENSION : BALL::NonpolarSolvation::Default , BALL::NonpolarSolvation::Option , BALL::UhligCavFreeEnergyProcessor::Default , BALL::UhligCavFreeEnergyProcessor::Option
• SURFACE_THICKNESS : BALL::GeometricFit::Default , BALL::GeometricFit::Option
• SURFACE_TYPE : BALL::GeometricFit::Default , BALL::GeometricFit::Option , BALL::Pair6_12InteractionEnergyProcessor::Default , BALL::Pair6_12InteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::Default , BALL::PairExpInteractionEnergyProcessor::Option
• surface_type_ : BALL::SurfaceProcessor
• SurfaceBase() : BALL::SurfaceBase
• SurfaceProcessor() : BALL::SurfaceProcessor
• SurfaceType : BALL::GeometricFit , BALL::Pair6_12InteractionEnergyProcessor , BALL::PairExpInteractionEnergyProcessor , BALL::SurfaceProcessor
• SURVIVORS : BALL::EvolutionaryDocking::Default , BALL::EvolutionaryDocking::Option
• survivors_ : BALL::GeneticAlgorithm
• SUSPECT_BOND_LENGTHS : BALL::ResidueChecker
• SVMModel() : BALL::QSAR::SVMModel
• SVRModel() : BALL::QSAR::SVRModel
• swap() : BALL::Atom , BALL::AtomContainer , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::Bond , BALL::Chain , BALL::Composite , BALL::ConstForwardIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::List< Value > , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::PDBRecords , BALL::PropertyManager , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::Selectable , BALL::String , BALL::StringHashMap< Value > , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::VIEW::ColorExtension2 , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::Disc , BALL::VIEW::GeometricObject , BALL::VIEW::Label , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::VIEW::MultiColorExtension , BALL::VIEW::Point , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::Vertex2 , BALL::VIEW::Vertex
• swap_bytes_ : BALL::CCP4File , BALL::DCDFile , BALL::DSN6File
• swap_endian_ : BALL::BinaryFileAdaptor< T >
• swap_side_by_side_stereo_ : BALL::VIEW::Stage
• swapSideBySideStereo() : BALL::VIEW::Stage
• swapValues_() : BALL::VIEW::DockDialog , BALL::VIEW::GeometricFitDialog
• swidthf1_ : BALL::Bruker2DFile
• swidthf2_ : BALL::Bruker2DFile
• switch_grid_ : BALL::VIEW::Scene
• switch_move : BALL::VIEW::TestFramework
• switchRecordMove() : BALL::VIEW::TestFramework
• switchRenderer() : BALL::VIEW::Scene
• switchShowGrid() : BALL::VIEW::Scene
• switchShowSecondaryStructure() : BALL::VIEW::MolecularControl
• switchShowWidget() : BALL::VIEW::Scene
• switchString() : BALL::LineBasedFile
• switchToLastMode() : BALL::VIEW::InteractionModeManager , BALL::VIEW::Scene
• switchView() : BALL::VIEW::AssignBondOrderResultsDialog , BALL::VIEW::PubChemDialog
• sym_size : BALL::TRRFile::TRRHeader
• Symbol : BALL::Element
• symbol : BALL::MOLFile::AtomStruct , BALL::PTE_::SymbolToElement
• SYMBOL : BALL::SmartsParser::SPAtom
• symmetry_group_ : BALL::GAMESSDatFile
• symmetry_operator : BALL::PDB::RecordSSBOND
• symops_ : BALL::SpaceGroupParameters
• sync() : BALL::LogStreamBuf
• SyncClippingPlanesMessage() : BALL::VIEW::SyncClippingPlanesMessage
• syntax_tree_ : BALL::ExpressionParser
• SyntaxTree() : BALL::ExpressionParser::SyntaxTree
• sys_path_ : BALL::PyInterpreter
• system : BALL::GAMESSLogFile
• System() : BALL::System
• system1_ : BALL::DockingAlgorithm
• system2_ : BALL::DockingAlgorithm
• system_ : BALL::ConformationSet , BALL::CrystalGenerator , BALL::ForceField , BALL::SDGenerator , BALL::ShiftModel1D , BALL::ShiftModel2D , BALL::SmilesParser , BALL::VIEW::FDPBDialog , BALL::VIEW::GenerateCrystalDialog , BALL::VIEW::SDWidget
• system_backup_a_ : BALL::GeometricFit
• system_backup_b_ : BALL::GeometricFit
• system_i_ : BALL::PoseClustering
• system_j_ : BALL::PoseClustering
• system_molecular_weight : BALL::NMRStarFile::MolecularSystem
• system_name : BALL::NMRStarFile::MolecularSystem
• system_oligomer_state : BALL::NMRStarFile::MolecularSystem
• system_origin_ : BALL::VIEW::Scene
• system_paramagnetic : BALL::NMRStarFile::MolecularSystem
• system_physical_state : BALL::NMRStarFile::MolecularSystem
• system_ptr_ : BALL::MolecularDynamics , BALL::SnapShotManager
• system_thiol_state : BALL::NMRStarFile::MolecularSystem