- m -

• main() : TOPPBase
• main_() : NucleicAcidSearchEngine , TOPPBase , TOPPFLASHDeconv , TOPPGNPSExport
• mainWindowNeedsUpdate() : TOPPASScene
• makeAxes_() : Plot3DOpenGLCanvas
• makeAxesTicks_() : Plot3DOpenGLCanvas
• makeBaseFeature_() : OMSFileLoad
• makeConsensusFeature_() : QTClusterFinder
• makeDataAsStick_() : Plot3DOpenGLCanvas
• makeDataAsTopView_() : Plot3DOpenGLCanvas
• makeDataValue_() : OMSFileLoad
• makeDir() : File
• makeFeatureUIDtoConsensusMapIndex_() : MQExporterHelper
• makeGridLines_() : Plot3DOpenGLCanvas
• makeGround_() : Plot3DOpenGLCanvas
• makeScanMap_() : PepXMLFile
• makeSeqTable_() : QTCluster
• makeStream() : CompressedInputSource
• manhattanDist_() : ConfidenceScoring
• map() : DimBase , DimIM , DimINT , DimMapper< N_DIM > , DimMZ , DimRT
• map2csv() : QcMLFile
• MapAlignmentAlgorithmIdentification() : MapAlignmentAlgorithmIdentification
• MapAlignmentAlgorithmKD() : MapAlignmentAlgorithmKD
• MapAlignmentAlgorithmPoseClustering() : MapAlignmentAlgorithmPoseClustering
• MapAlignmentAlgorithmTreeGuided() : MapAlignmentAlgorithmTreeGuided
• MapAlignmentEvaluationAlgorithm() : MapAlignmentEvaluationAlgorithm
• MapAlignmentEvaluationAlgorithmPrecision() : MapAlignmentEvaluationAlgorithmPrecision
• MapAlignmentEvaluationAlgorithmRecall() : MapAlignmentEvaluationAlgorithmRecall
• mapBetweenMSFileNameAndMSRunIndex_() : MzTab
• mapBetweenRunAndSearchEngines_() : MzTab
• mapComponentsToConcentrations() : AbsoluteQuantitationStandards
• mapExperiment() : MRMMapping
• mapExperimentToTransitionList() : MRMFeatureFinderScoring
• mapGroupsToProteins_() : MzTab
• mapIDRunFileIndex2MSFileIndex_() : MzTab
• mapIDRunIdentifier2IDRunIndex_() : MzTab
• mapIndex() : KDTreeFeatureMaps
• Mapping() : ProteinIdentification::Mapping
• MappingParam() : MappingParam
• mapPrecursorsToIdentifications() : IDMapper
• mapRange() : DimMapper< N_DIM >
• mapSearchEngineScoreToCvParam_() : MzTabFile
• mapSearchEngineToCvParam_() : MzTabFile
• margin() : AxisWidget
• markUnreachable() : TOPPASMergerVertex , TOPPASSplitterVertex , TOPPASVertex
• MascotGenericFile() : MascotGenericFile
• MascotInfile() : MascotInfile
• MascotRemoteQuery() : MascotRemoteQuery
• MascotXMLFile() : MascotXMLFile
• MascotXMLHandler() : MascotXMLHandler
• MassAnalyzer() : MassAnalyzer
• MassAnalyzerVisualizer() : MassAnalyzerVisualizer
• massCorrectionTerm() : PScore
• MassDecomposition() : MassDecomposition
• MassDecompositionAlgorithm() : MassDecompositionAlgorithm
• MassExplainer() : MassExplainer
• MassFeatureTrace() : MassFeatureTrace
• massToIndex_() : FLASHDeconvHelperStructs::PrecalculatedAveragine
• MassTrace() : MassTrace
• MasstraceCorrelator() : MasstraceCorrelator
• MassTraceDetection() : MassTraceDetection
• MassTraces() : FeatureFinderAlgorithmPickedHelperStructs::MassTraces
• Match() : TargetedSpectraExtractor::Match
• matchedCurrentChain() : XQuestScores
• MatchedIterator() : MatchedIterator< CONT_T, TRAIT, CONST_T >
• matchMassTraces_() : MasstraceCorrelator
• matchModification_() : PepXMLFileMascot , ProtXMLFile
• matchOddsScore() : XQuestScores
• matchOddsScoreSimpleSpec() : XQuestScores
• matchSpectrum() : TargetedSpectraExtractor
• Matrix() : Matrix< Value >
• max_size() : KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc > , ConstRefVector< ContainerT >
• maxBound() : Histogram< ValueType, BinSizeType >
• maxLength() : LogWindow
• MaxLikeliFitter1D() : MaxLikeliFitter1D
• maxPosition() : DIntervalBase< D >
• maxPositive() : DPosition< D, TCoordinateType >
• maxValue() : Histogram< ValueType, BinSizeType >
• maxX() : DIntervalBase< D >
• maxY() : DIntervalBase< D >
• maybeGetIMData() : MSSpectrum
• MBBegin() : Mobilogram
• MBEnd() : Mobilogram
• mean() : BasicStatistics< RealT > , mean_and_stddev
• mean_and_stddev() : mean_and_stddev
• meanIntensity_() : MSstatsFile , TriqlerFile
• median() : CalibrationData
• MemUsage() : SysInfo::MemUsage
• merge() : IdentificationData , IdentifiedSequence< SeqType > , InputFile , Observation , ObservationMatch , ParentSequence , ScoredProcessingResult , IsotopeDistribution , Param , QcMLFile
• mergeable() : ProteinIdentification::SearchParameters
• mergeAllIDRuns() : ConsensusMapMergerAlgorithm
• mergeAlongTime() : FIAMSDataProcessor
• mergeAnnotatedSpectra() : OPXLSpectrumProcessingAlgorithms
• mergeFailed() : TOPPASMergerVertex
• mergeFeatures() : TargetedSpectraExtractor
• mergeIntoLayer() : Plot2DCanvas
• mergeMULTISEPeptideIds() : PercolatorFeatureSetHelper
• mergeMULTISEProteinIds() : PercolatorFeatureSetHelper
• mergePeaks() : MSChromatogram
• mergeProteinIDRuns() : ConsensusMapMergerAlgorithm
• mergeProteinsAcrossFractionsAndReplicates() : ConsensusMapMergerAlgorithm
• mergeScoredProcessingResults_() : IdentificationData
• mergeSpectra_() : SpectraMerger
• mergeSpectraBlockWise() : SpectraMerger
• mergeSpectraPrecursors() : SpectraMerger
• mergeVeto_() : GridBasedClustering< Metric >
• MessagePasserFactory() : MessagePasserFactory< Label >
• messageReady() : TOPPASScene
• MetaboliteFeatureDeconvolution() : MetaboliteFeatureDeconvolution
• MetaboliteSpectralMatching() : MetaboliteSpectralMatching
• MetaDataBrowser() : MetaDataBrowser
• metadataFileDialog() : TOPPViewBase
• MetaInfo() : MetaInfo
• MetaInfoDescription() : MetaInfoDescription
• MetaInfoDescriptionVisualizer() : MetaInfoDescriptionVisualizer
• MetaInfoInterface() : MetaInfoInterface
• MetaInfoInterfaceUtils() : MetaInfoInterfaceUtils
• MetaInfoRegistry() : MetaInfoRegistry
• MetaInfoVisualizer() : MetaInfoVisualizer
• metaPasses_() : DataFilters
• metaRegistry() : MetaInfoInterface
• metaValueExists() : MetaInfoInterface
• minBound() : Histogram< ValueType, BinSizeType >
• MinimumDistance() : MinimumDistance
• minNegative() : DPosition< D, TCoordinateType >
• minPosition() : DIntervalBase< D >
• minPositive() : DPosition< D, TCoordinateType >
• minSpanIfSingular() : RangeBase , RangeManager< RangeBases >
• minValue() : Histogram< ValueType, BinSizeType >
• minX() : DIntervalBase< D >
• minY() : DIntervalBase< D >
• mirrorModeActive() : Plot1DCanvas
• MissedCleavages() : MissedCleavages
• MissingInformation() : MissingInformation
• MobilityPeak1D() : MobilityPeak1D
• MobilityPeak2D() : MobilityPeak2D
• Mobilogram() : Mobilogram
• MockFeature() : MockFeature
• MockMRMFeature() : MockMRMFeature
• MockSignalToNoise() : MockSignalToNoise
• MockTransitionGroup() : MockTransitionGroup
• modelChanged_() : TheoreticalSpectrumGenerationDialog
• ModelDescription() : ModelDescription< D >
• Modification() : Modification , Peptide::Modification
• modificationCorrectionTerm() : PScore
• ModificationDefinition() : ModificationDefinition
• ModificationDefinitionsSet() : ModificationDefinitionsSet
• ModificationsDB() : ModificationsDB
• modificationStatus_() : PlotCanvas
• ModificationVisualizer() : ModificationVisualizer
• modified() : ParamEditorDelegate , ParamEditor
• modifyStrings() : SVOutStream
• monitorFileChanged_() : FileWatcher
• MorphologicalFilter() : MorphologicalFilter
• mouseDoubleClickEvent() : EnhancedTabBar , MultiGradientSelector , Plot2DCanvas , TOPPASEdge , TOPPASInputFileListVertex , TOPPASOutputVertex , TOPPASSplitterVertex , TOPPASToolVertex , TOPPASVertex
• mouseMoveEvent() : HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
• mousePressEvent() : ColorSelector , HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASTreeView , TOPPASVertex
• mouseReleaseEvent() : HistogramWidget , MultiGradientSelector , Plot1DCanvas , Plot2DCanvas , Plot3DOpenGLCanvas , TOPPASVertex
• move() : Annotation1DCaret< DataPoint > , Annotation1DDistanceItem , Annotation1DItem , Annotation1DPeakItem< DataPoint > , Annotation1DTextItem , Annotation1DVerticalLineItem
• moveMatchingItems() : IDFilter
• moveNewEdgeTo_() : TOPPASVertex
• movePepIDsAndRefProteinsToResultFaster_() : IDMergerAlgorithm
• moveSelectedItems() : TOPPASScene
• MQCommonOutputs() : MQExporterHelper::MQCommonOutputs
• MQEvidence() : MQEvidence
• MQMsms() : MQMsms
• MRMAssay() : MRMAssay
• MRMBatchFeatureSelector() : MRMBatchFeatureSelector
• MRMDecoy() : MRMDecoy
• MRMFeature() : MRMFeature
• MRMFeatureFilter() : MRMFeatureFilter
• MRMFeatureFinderScoring() : MRMFeatureFinderScoring
• MRMFeatureOpenMS() : MRMFeatureOpenMS
• MRMFeaturePicker() : MRMFeaturePicker
• MRMFeaturePickerFile() : MRMFeaturePickerFile
• MRMFeatureQC() : MRMFeatureQC
• MRMFeatureQCFile() : MRMFeatureQCFile
• MRMFeatureSelector() : MRMFeatureSelector
• MRMFeatureSelector_test() : MRMFeatureSelector_test
• MRMIonSeries() : MRMIonSeries
• MRMMapping() : MRMMapping
• MRMTransitionGroup() : MRMTransitionGroup< ChromatogramType, TransitionType >
• MRMTransitionGroupPicker() : MRMTransitionGroupPicker
• MS1Extraction_() : OpenSwathWorkflowBase
• MS2File() : MS2File
• Ms2IdentificationRate() : Ms2IdentificationRate
• Ms2SpectrumStats() : Ms2SpectrumStats
• MSChromatogram() : MSChromatogram
• MSDataAggregatingConsumer() : MSDataAggregatingConsumer
• MSDataCachedConsumer() : MSDataCachedConsumer
• MSDataChainingConsumer() : MSDataChainingConsumer
• MSDataSqlConsumer() : MSDataSqlConsumer
• MSDataStoringConsumer() : MSDataStoringConsumer
• MSDataTransformingConsumer() : MSDataTransformingConsumer
• MSDataWritingConsumer() : MSDataWritingConsumer
• MSExperiment() : MSExperiment
• MSFileSectionEntry() : ExperimentalDesign::MSFileSectionEntry
• MsInspectFile() : MsInspectFile
• msLevel() : AreaIterator< ValueT, ReferenceT, PointerT, SpectrumIteratorT, PeakIteratorT >::Param
• MSNumpressCoder() : MSNumpressCoder
• MSPFile() : MSPFile
• MSPGenericFile() : MSPGenericFile
• MSPGenericFile_friend() : MSPGenericFile_friend
• MSSpectrum() : MSSpectrum
• MSstatsFile() : MSstatsFile
• MSstatsLine_() : MSstatsFile::MSstatsLine_
• MSstatsTMTLine_() : MSstatsFile::MSstatsTMTLine_
• MultiGradient() : MultiGradient
• MultiGradientSelector() : MultiGradientSelector
• multiNB() : NeighborSeq::NeighborStats
• MultiplexClustering() : MultiplexClustering
• MultiplexDeltaMasses() : MultiplexDeltaMasses
• MultiplexDeltaMassesGenerator() : MultiplexDeltaMassesGenerator
• MultiplexDistance() : MultiplexClustering::MultiplexDistance
• MultiplexFilteredMSExperiment() : MultiplexFilteredMSExperiment
• MultiplexFilteredPeak() : MultiplexFilteredPeak
• MultiplexFiltering() : MultiplexFiltering
• MultiplexFilteringCentroided() : MultiplexFilteringCentroided
• MultiplexFilteringProfile() : MultiplexFilteringProfile
• MultiplexIsotopicPeakPattern() : MultiplexIsotopicPeakPattern
• MultiplexSatelliteCentroided() : MultiplexSatelliteCentroided
• MultiplexSatelliteProfile() : MultiplexSatelliteProfile
• mz() : KDTreeFeatureMaps
• MZBegin() : MSSpectrum
• MzCalibration() : MzCalibration
• MzDataFile() : MzDataFile
• MzDataHandler() : MzDataHandler
• MzDataValidator() : MzDataValidator
• MZEnd() : MSSpectrum
• MzIdentMLDOMHandler() : MzIdentMLDOMHandler
• MzIdentMLFile() : MzIdentMLFile
• MzIdentMLHandler() : MzIdentMLHandler
• MzIdentMLValidator() : MzIdentMLValidator
• MzMLFile() : MzMLFile
• MzMLHandler() : MzMLHandler
• MzMLSpectrumDecoder() : MzMLSpectrumDecoder
• MzMLSqliteHandler() : MzMLSqliteHandler
• MzMLSqliteSwathHandler() : MzMLSqliteSwathHandler
• MzMLSwathFileConsumer() : MzMLSwathFileConsumer
• MzMLValidator() : MzMLValidator
• MzQCFile() : MzQCFile
• MzTab() : MzTab
• MzTabBase() : MzTabBase
• MzTabBoolean() : MzTabBoolean
• MzTabDouble() : MzTabDouble
• MzTabDoubleList() : MzTabDoubleList
• MzTabFile() : MzTabFile
• MzTabInteger() : MzTabInteger
• MzTabIntegerList() : MzTabIntegerList
• MzTabM() : MzTabM
• MzTabMetaData() : MzTabMetaData
• MzTabMFile() : MzTabMFile
• MzTabMMetaData() : MzTabMMetaData
• MzTabModification() : MzTabModification
• MzTabParameter() : MzTabParameter
• MzTabParameterList() : MzTabParameterList
• MzTabProteinSectionRow() : MzTabProteinSectionRow
• MzTabSpectraRef() : MzTabSpectraRef
• MzTabString() : MzTabString
• MzTabStringList() : MzTabStringList
• MZTrafoModel() : MZTrafoModel
• MzXMLFile() : MzXMLFile
• MzXMLHandler() : MzXMLHandler