- s -
- safeParse_()
: MzMLFile
- sameNrOfMSFilesPerFraction()
: ExperimentalDesign
- Sample()
: Sample
- sample_stddev()
: mean_and_stddev
- sample_variance()
: mean_and_stddev
- SampleSection()
: ExperimentalDesign::SampleSection
- SampleTreatment()
: SampleTreatment
- SampleVisualizer()
: SampleVisualizer
- sanityCheck_()
: TOPPASScene
- save_()
: XMLFile
- saveAll_()
: MetaDataBrowser
- saveAsImage()
: Plot1DWidget
, PlotWidget
- saveCurrentLayer()
: PlotCanvas
- saveCurrentPipelineAs()
: TOPPASBase
- saveFeatureCompoundInfoAsTSV()
: SiriusMSFile
- saveFile()
: INIFileEditorWindow
- saveFileAs()
: INIFileEditorWindow
- saveIDs_()
: SpectraIDViewTab
- saveIfChanged()
: TOPPASScene
- SaveImageDialog()
: SaveImageDialog
- saveLayerAll()
: TOPPViewBase
- saveLayerVisible()
: TOPPViewBase
- saveMe()
: TOPPASScene
- savePipeline()
: TOPPASBase
- savePipelineAs()
: TOPPASBase
- savePipelineResourceFile()
: TOPPASBase
- savePreferences()
: TOPPASBase
, TOPPViewBase
- saveToClipboard()
: TOPPASBase
- saveToFile()
: LayerStoreData
, LayerStoreDataConsensusMapAll
, LayerStoreDataConsensusMapVisible
, LayerStoreDataFeatureMapAll
, LayerStoreDataFeatureMapVisible
, LayerStoreDataIdentAll
, LayerStoreDataIdentVisible
, LayerStoreDataPeakMapAll
, LayerStoreDataPeakMapVisible
- SavitzkyGolayFilter()
: SavitzkyGolayFilter
- scale_()
: AxisPainter
- scaleBy()
: RangeBase
, RangeManager< RangeBases >
- scaleData_()
: SimpleSVM
- scaledIntensity_()
: Plot3DOpenGLCanvas
- scaledInversMZ_()
: Plot3DOpenGLCanvas
- scaledInversRT_()
: Plot3DOpenGLCanvas
- scaledMZ_()
: Plot3DOpenGLCanvas
- scaledRT_()
: Plot3DOpenGLCanvas
- ScanEvent()
: Ms2SpectrumStats::ScanEvent
- ScanWindow()
: ScanWindow
- ScanWindowVisualizer()
: ScanWindowVisualizer
- score()
: DiaPrescore
- score_with_isotopes()
: DIAScoring
- scoreAllChromatograms_()
: OpenSwathWorkflow
- scoreAndFilterPeakGroups_()
: FLASHDeconvAlgorithm
- scoreAssay_()
: ConfidenceScoring
- ScoredProcessingResult()
: ScoredProcessingResult
- scoreFeature_()
: ConfidenceScoring
- scoreHullpoints()
: MasstraceCorrelator
- scoreIdentification_()
: MRMFeatureFinderScoring
- scoreIsotopePattern_()
: DIAScoring
- scoreMap()
: ConfidenceScoring
- scoreMZ_()
: FeatureFindingMetabo
- scoreMZByExpectedMean_()
: FeatureFindingMetabo
- scoreMZByExpectedRange_()
: FeatureFindingMetabo
- scorePeakgroups()
: MRMFeatureFinderScoring
- scoreRT_()
: FeatureFindingMetabo
- scoreSpectra()
: TargetedSpectraExtractor
- ScoreType()
: ScoreType
- search()
: SimpleSearchEngineAlgorithm
- searchAndShow_()
: DIATreeTab
, SpectraTreeTab
- SearchEngineBase()
: SearchEngineBase
- searchMass_()
: AccurateMassSearchEngine
- searchModification()
: ModificationsDB
- searchModifications()
: ModificationsDB
- searchModificationsByDiffMonoMass()
: ModificationsDB
- searchModificationsByDiffMonoMassSorted()
: ModificationsDB
- searchModificationsFast()
: ModificationsDB
- searchNextCell_()
: HashGrid< Cluster >::ConstIterator
, HashGrid< Cluster >::Iterator
- SearchParameters()
: ProteinIdentification::SearchParameters
- searchPrefix()
: StringListUtils
- searchSpectrum()
: TargetedSpectraExtractor
- searchSuffix()
: StringListUtils
- seed()
: RandomShuffler
- SeedListGenerator()
: SeedListGenerator
- seekGToSavedPosition()
: FuzzyStringComparator::InputLine
- select()
: MSSpectrum
- selectAll()
: Annotations1DContainer
- selectChromHelper_()
: MRMTransitionGroupPicker
- selectCompoundsForBatch_()
: OpenSwathWorkflow
- selected()
: ParamTree
- selectFeaturesFromCandidates_()
: FeatureFinderAlgorithmMetaboIdent
- selectionChanged()
: ParamTree
- selectionCopied()
: TOPPASScene
- selectItemAt()
: Annotations1DContainer
- selectMRMFeature()
: MRMFeatureSelector
- SelectorParameters()
: MRMFeatureSelector::SelectorParameters
- selectSpectra()
: TargetedSpectraExtractor
- selectSwathTransitions()
: OpenSwathHelper
- selectSwathTransitionsPasef()
: OpenSwathHelper
- SemanticValidator()
: SemanticValidator
- sendClipboardContent()
: TOPPASBase
- sendCursorStatus()
: PlotCanvas
, PlotWidget
, TOPPASWidget
- sendStatus()
: BaseVisualizerGUI
- sendStatusMessage()
: PlotCanvas
, PlotWidget
, TOPPASWidget
- seqTypeSwitch_()
: TheoreticalSpectrumGenerationDialog
- sequence()
: MSstatsFile::MSstatsLine_
, MSstatsFile::MSstatsTMTLine_
- SequenceIdentity_()
: DecoyGenerator
- sequenceMatches()
: FASTAFile::FASTAEntry
- SequestInfile()
: SequestInfile
- SequestOutfile()
: SequestOutfile
- set()
: Date
, DateTime
, GlobalExceptionHandler
, FilterList
, IsotopeDistribution
, MzTabBoolean
, MzTabDouble
, MzTabDoubleList
, MzTabInteger
, MzTabIntegerList
, MzTabModificationList
, MzTabParameterList
, MzTabString
, MzTabStringList
, NASequence
, RecentFilesMenu
, TOPPASVertex::TOPPASFilenames
- set2DData()
: MSExperiment
- set_chromatogram_flag()
: LayerDataPeak
- set_high_bound()
: _Region< __K, _Val, _SubVal, _Acc, _Cmp >
- set_low_bound()
: _Region< __K, _Val, _SubVal, _Acc, _Cmp >
- setAAAfter()
: PeptideEvidence
- setAABefore()
: PeptideEvidence
- setAbsChargeRange()
: PeakGroup
- setAbsolute()
: FineIsotopePatternGenerator
- setAcceptableAbsolute()
: FuzzyStringComparator
- setAcceptableRelative()
: FuzzyStringComparator
- setAccession()
: CVMappingTerm
, CVTerm
, MzTabParameter
, ProteinHit
- setAccessionAttribute()
: SemanticValidator
- setAccuracy()
: MassAnalyzer
- setAcquisitionInfo()
: ChromatogramSettings
, SpectrumSettings
- setAcquisitionMode()
: IonDetector
- setActionMode()
: TOPPASScene
- setActivationEnergy()
: Precursor
- setActivationMethod()
: DeconvolvedSpectrum
- setActivationMethods()
: Precursor
- setActive()
: ChargePair
, DataFilters
- setADCSamplingFrequency()
: IonDetector
- setAdditionalContextMenu()
: PlotCanvas
- setAddress()
: ContactPerson
- setAdductBase()
: MassExplainer
- setAffectedAminoAcids()
: Modification
- setAllowChildren()
: CVMappingTerm
- setAllowedThreads()
: TOPPASScene
- setAllowIsotopeError()
: XTandemInfile
- setAllowShortNumbers()
: AxisWidget
- setAlwaysAppendData()
: PeakFileOptions
- setAmount()
: Adduct
- setAnalysisResults()
: PeptideHit
- setArea()
: Area< N_DIM >
- setAtBottomRow()
: TableView
- setAtomicNumber()
: Element
- setAverageMass()
: ResidueModification
- setAverageWeight()
: Element
, Residue
- setAveragine()
: FLASHDeconvAlgorithm
- setAvgMass()
: Ribonucleotide
- setAvgPPMError()
: PeakGroup
- setAxisBounds()
: AxisWidget
- setBackboneBasicityLeft()
: Residue
- setBackboneBasicityRight()
: Residue
- setBaselossFormula()
: Ribonucleotide
- setBaseName()
: PeptideIdentification
- setBlacklistItems()
: FilterableList
- setBlind()
: InspectInfile
- setBoundary()
: MascotInfile
- setCalculatedMassToCharge()
: IdentificationHit
- setCalculatedMZ()
: AccurateMassSearchResult
- setCallbacks()
: ExternalProcess
, ExternalProcessMBox
- setCanvas_()
: PlotWidget
- setCastValue_()
: AbsoluteQuantitationMethodFile
, MRMFeaturePickerFile
- setCentroidSD()
: MassTrace
- setChanged()
: TOPPASScene
- setCharge()
: AccurateMassSearchResult
, Adduct
, BaseFeature
, ChargePair
, EmpiricalFormula
, FeatureHandle
, FeatureHypothesis
, IdentificationHit
, PeptideHit
, Precursor
- setChargeIsotopeCosine()
: PeakGroup
- setCharges()
: MascotInfile
- setChargeScore()
: PeakGroup
- setChargeSNR()
: PeakGroup
- setChargeState()
: PeptideCompound
, TraMLProduct
, LightCompound
- setChecksum()
: SourceFile
- setCheckTermValueTypes()
: SemanticValidator
- setCheckUnits()
: SemanticValidator
- setChromatogramAnnotation()
: LayerDataChrom
- setChromatogramProcessingFunc()
: MSDataTransformingConsumer
- setChromatograms()
: MSExperiment
- setChromatogramType()
: ChromatogramSettings
- setChromData()
: LayerDataChrom
- setCleavage()
: MascotInfile
- setCleavageSite()
: XTandemInfile
- setClipboard()
: TOPPASScene
- setCode()
: Ribonucleotide
- setCoefficientLimits()
: MZTrafoModel
- setCoefficients()
: MZTrafoModel
- setColor()
: Annotation1DCaret< DataPoint >
, Annotation1DPeakItem< DataPoint >
, ColorSelector
, TOPPASEdge
- setColumn()
: HPLC
- setColumnBounds()
: LPWrapper
- setColumnHeaders()
: ConsensusMap
- setColumnName()
: LPWrapper
- setColumnType()
: LPWrapper
- setCombinationsLogic()
: CVMappingRule
- setCometID()
: DigestionEnzymeProtein
- setComment()
: ChromatogramSettings
, ExperimentalSettings
, HPLC
, Sample
, SampleTreatment
, SpectrumSettings
- setCommentRows()
: MzTab
, MzTabM
- setCommonName()
: SpectralMatch
- setCompletionTime()
: DataProcessing
- setCompomer()
: ChargePair
- setComponentName()
: AbsoluteQuantitationMethod
- setCompoundRef()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setCompounds()
: TargetedExperiment
- setCompression()
: MSNumpressCoder::NumpressConfig
, PeakFileOptions
- setConcentration()
: Sample
- setConcentrationUnits()
: AbsoluteQuantitationMethod
- setConfig()
: MzMLSqliteHandler
, SqMassFile
- setConfigurations()
: IncludeExcludeTarget
- setContactInfo()
: ContactPerson
- setContacts()
: ExperimentalSettings
, TargetedExperiment
- setConvexHulls()
: Feature
- setCorrectionFactor()
: DBSuitability::SuitabilityData
- setCorrelationCoefficient()
: AbsoluteQuantitationMethod
- setCoverage()
: ProteinHit
- setCreationDate()
: Identification
- setCTermGain()
: DigestionEnzymeProtein
- setCTerminalModification()
: AASequence
- setCTerminalModificationByDiffMonoMass()
: AASequence
- setCurrentIndex()
: LayerData1DBase
- setCurrentLayer()
: LayerStack
- setCurrentLayerParameters()
: PlotCanvas
- setCurrentLayerPeakPenStyle()
: Plot1DCanvas
- setCurrentProcessingStep()
: IdentificationData
- setCustomizations()
: Instrument
- setCutOff()
: BaseModel
- setCutsAfterRegEx()
: DigestionEnzymeRNA
- setCutsBeforeRegEx()
: DigestionEnzymeRNA
- setCVIdentifierRef()
: CVMappingTerm
, CVTerm
- setCVLabel()
: MzTabParameter
- setCVReferences()
: CVMappings
- setCVs()
: TargetedExperiment
- setCVTerms()
: CVMappingRule
, CVTermList
, CVTermListInterface
- setCWD()
: InputFile
, InputFileList
- setData()
: FeatureFinderAlgorithm
, FeatureFinderAlgorithmPicked
, BilinearInterpolation< Key, Value >
, LinearInterpolation< Key, Value >
- setDatabase()
: SequestInfile
- setDataPoints()
: TransformationDescription
- setDataProcessing()
: ChromatogramSettings
, ConsensusMap
, FeatureMap
, MetaInfoDescription
, SpectrumSettings
- setDate()
: DateTime
- setDateTime()
: ExperimentalSettings
, ProteinIdentification
- setDb()
: InspectInfile
- setDB()
: MascotInfile
- setDecoyTransitionType()
: ReactionMonitoringTransition
- setDefaultParametersFilename()
: XTandemInfile
- setDefaultParams_()
: IsobaricChannelExtractor
, IsobaricQuantifier
, ItraqEightPlexQuantitationMethod
, ItraqFourPlexQuantitationMethod
, TMTEighteenPlexQuantitationMethod
, TMTElevenPlexQuantitationMethod
, TMTSixPlexQuantitationMethod
, TMTSixteenPlexQuantitationMethod
, TMTTenPlexQuantitationMethod
- setDefaults()
: Param
- setDelayInSeconds()
: FileWatcher
- setDescription()
: MetaInfoRegistry
, ProteinHit
, TOPPASScene
- setDetectingTransition()
: ReactionMonitoringTransition
, LightTransition
- setDFSColor()
: TOPPASVertex
- setDiffAverageMass()
: ResidueModification
- setDiffFormula()
: ResidueModification
- setDiffMonoMass()
: ResidueModification
- setDigestionTime()
: Digestion
- setDimMinMax()
: DIntervalBase< D >
- setDirectory()
: OutputDirectory
- setDrawInterestingMZs()
: Plot1DCanvas
- setDrawMode()
: Plot1DCanvas
- setDrawMode1D()
: TOPPViewBase
- setDriftTime()
: MSSpectrum
, Precursor
, PeptideCompound
, LightCompound
- setDriftTimeArray()
: OSSpectrum
- setDriftTimeUnit()
: Mobilogram
, MSSpectrum
, Precursor
- setDriftTimeWindowLowerOffset()
: Precursor
- setDriftTimeWindowUpperOffset()
: Precursor
- setEdgeScore()
: ChargePair
- setEditorData()
: ListEditorDelegate
, ParamEditorDelegate
- setElement()
: IMSAlphabet
, LPWrapper
- setElementIndex()
: ChargePair
- setElementPath()
: CVMappingRule
- setEmail()
: ContactPerson
- setEmpiricalFormula()
: AccurateMassSearchResult
- setEmptyRows()
: MzTab
, MzTabM
- setEnd()
: PeptideEvidence
- setEnzyme()
: Digestion
, EnzymaticDigestion
, InspectInfile
, ProteaseDigestion
, RNaseDigestion
, SequestInfile
- setExcludeTargets()
: TargetedExperiment
- setExpectedSize()
: FullSwathFileConsumer
, IMSDataConsumer
, MSDataAggregatingConsumer
, MSDataCachedConsumer
, MSDataChainingConsumer
, MSDataSqlConsumer
, MSDataStoringConsumer
, MSDataTransformingConsumer
, MSDataWritingConsumer
, NoopMSDataConsumer
- setExperimentalMassToCharge()
: IdentificationHit
- setExperimentalSettings()
: FullSwathFileConsumer
, IMSDataConsumer
, MSDataAggregatingConsumer
, MSDataCachedConsumer
, MSDataChainingConsumer
, MSDataSqlConsumer
, MSDataStoringConsumer
, MSDataTransformingConsumer
, MSDataWritingConsumer
, NoopMSDataConsumer
, NoopMSDataWritingConsumer
- setExperimentalSettingsFunc()
: MSDataTransformingConsumer
- setExperimentLabel()
: PeptideIdentification
- setExperimentType()
: ConsensusMap
- setExportDecoys()
: MascotRemoteQuery
- setFactor()
: SpectrumCheapDPCorr
- setFeatOptions()
: FileHandler
- setFeature()
: FeatureEditDialog
- setFeatureName()
: AbsoluteQuantitationMethod
- setFeatures()
: ConsensusFeature
- setFile()
: GlobalExceptionHandler
- setFileFormatFilter()
: InputFile
, TOPPASInputFileDialog
- setFilename()
: InputFile
- setFileName()
: ListEditorDelegate
- setFilenames()
: InputFileList
, TOPPASInputFileListVertex
- setFileSize()
: SourceFile
- setFileType()
: SourceFile
- setFillData()
: PeakFileOptions
- setFilters()
: PlotCanvas
- setFilters_()
: FLASHDeconvAlgorithm
- setFinalMSExponent()
: MassAnalyzer
- setFirstColumn()
: FuzzyStringComparator
- setFirstName()
: ContactPerson
- setFitterParam()
: EmgScoring
- setFivePrimeGain()
: DigestionEnzymeRNA
- setFivePrimeMod()
: NASequence
- setFixedModification()
: ModificationDefinition
- setFlags()
: Annotation1DTextItem
- setFloatDataArrays()
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- setFlux()
: HPLC
- setForceMQCompatability()
: PeakFileOptions
- setForceTPPCompatability()
: PeakFileOptions
- setFormula()
: Adduct
, Residue
, ResidueModification
, Ribonucleotide
- setFormVersion()
: MascotInfile
- setFoundAdduct()
: AccurateMassSearchResult
- setFoundMass()
: AccurateMassSearchResult
- setFoundPrecursorCharge()
: SpectralMatch
- setFoundPrecursorMass()
: SpectralMatch
- setFractionIdentifier()
: ExperimentalSettings
- setFragmentMassErrorUnit()
: XTandemInfile
- setFragmentMassTolerance()
: XTandemInfile
- setFreeText()
: PythonModuleRequirement
- setFromParam()
: RecentFilesMenu
- setFullId()
: ResidueModification
- setFullName()
: ResidueModification
- setFunction()
: GlobalExceptionHandler
- setGradient()
: HPLC
- setGravityAxis()
: Gravitator
- setHeaderExportName()
: TableView
- setHeaders()
: TableView
, TreeView
- setHigherScoreBetter()
: PeptideIdentification
, ProteinIdentification
- setHits()
: SpectrumIdentification
, MascotInfile
, PeptideIdentification
, ProteinIdentification
- setHoverPos()
: TOPPASEdge
- setHPLC()
: ExperimentalSettings
- setHTMLCode()
: Ribonucleotide
- setHullPoints()
: ConvexHull2D
- setID()
: Compomer
- setId()
: IdentificationHit
, ResidueModification
- setIdentifier()
: Acquisition
, CVMappingRule
, CVReference
, DocumentIdentifier
, PeptideIdentification
, ProteinIdentification
- setIdentifyingTransition()
: ReactionMonitoringTransition
, LightTransition
- setIMUnit()
: IMDataConverter
- setInchiString()
: SpectralMatch
- setIncludeTargets()
: TargetedExperiment
- setIndex()
: PeakGroup
- setIndividualIntensities()
: AccurateMassSearchResult
- setInf()
: MzTabDouble
, MzTabInteger
- setInferenceEngine()
: ProteinIdentification
- setInferenceEngineVersion()
: ProteinIdentification
- setInitialParameters()
: GammaDistributionFitter
, GaussFitter
, GumbelDistributionFitter
, GumbelMaxLikelihoodFitter
- setInitialParameters_()
: EGHTraceFitter
, EmgFitter1D
, GaussTraceFitter
- setInitialParametersMOM_()
: EmgFitter1D
- setInletType()
: IonSource
- setInputFilename()
: XTandemInfile
- setInputOutputCombo_()
: ToolsDialog
- setInstitution()
: ContactPerson
- setInstrument()
: ExperimentalSettings
, HPLC
, InspectInfile
, MascotInfile
- setInstruments()
: TargetedExperiment
- setInstrumentSettings()
: ChromatogramSettings
, SpectrumSettings
- setIntegerDataArrays()
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- setIntensity()
: ChromatogramPeak
, MobilityPeak1D
, MobilityPeak2D
, Peak1D
, Peak2D
- setIntensity32Bit()
: PeakFileOptions
- setIntensityArray()
: Chromatogram
, Spectrum
, OSChromatogram
, OSSpectrum
- setIntensityAsGravity()
: Gravitator
- setIntensityMode()
: PlotCanvas
, PlotWidget
, TOPPViewBase
- setIntensityRange()
: FeatureFileOptions
, PeakFileOptions
- setIntermediateProducts()
: ReactionMonitoringTransition
- setInternalChars_()
: Colorizer
- setInterpolationMode()
: MultiGradient
, MultiGradientSelector
- setInterpolationStep()
: InterpolationModel
- setInterpretations()
: IncludeExcludeTarget
- setInterProtein_()
: XFDRAlgorithm
- setIntraProtein_()
: XFDRAlgorithm
- setInvalid()
: QTCluster
- setInverseOrientation()
: AxisWidget
- setIonCutoffPercentage()
: SequestInfile
- setIonDetectors()
: Instrument
- setIonizationMethod()
: IonSource
- setIonLadderVisible()
: Plot1DCanvas
- setIonOptics()
: Instrument
- setIonSeriesWeights()
: SequestInfile
- setIonSources()
: Instrument
- setISName()
: AbsoluteQuantitationMethod
- setIsolationWidth()
: MassAnalyzer
- setIsolationWindowLowerOffset()
: Precursor
, Product
- setIsolationWindowUpperOffset()
: Precursor
, Product
- setIsotopeCosine()
: PeakGroup
- setIsotopeDaDistance()
: PeakGroup
- setIsotopeDistribution()
: Element
, IMSElement
- setIsotopesSimScore()
: AccurateMassSearchResult
- setIsRepeatable()
: CVMappingTerm
- setItems()
: FilterableList
, ListFilterDialog
- setKey()
: TOPPASInputFileListVertex
- setLabel()
: MassTrace
, PlotCanvas
- setLastName()
: ContactPerson
- setLayerFlag()
: PlotCanvas
- setLayerName()
: PlotCanvas
- setLeftSplitter()
: HistogramDialog
, HistogramWidget
- setLegend()
: AxisWidget
, HistogramDialog
, HistogramWidget
- setLevel()
: LogStream
, LogStreamBuf
- setLibraryIntensity()
: ReactionMonitoringTransition
, LightTransition
- setLine()
: GlobalExceptionHandler
- setList()
: ListTable
, ListEditor
- setListRestrictions()
: ListEditor
- setLLOD()
: AbsoluteQuantitationMethod
- setLLOQ()
: AbsoluteQuantitationMethod
- setLoadConvexHull()
: FeatureFileOptions
- setLoadDetail()
: MzMLHandler
, MzXMLHandler
, XMLHandler
- setLoadedFilePath()
: DocumentIdentifier
- setLoadedFileType()
: DocumentIdentifier
- setLoadSubordinates()
: FeatureFileOptions
- setLogDestination()
: FuzzyStringComparator
- setLogger()
: ProgressLogger
- setLogLevel()
: LogConfigHandler
- setLogMode()
: HistogramDialog
, HistogramWidget
- setLogProb()
: Adduct
- setLogScale()
: AxisWidget
- setLogType()
: ProgressLogger
- setLossFormulas()
: Residue
- setLossNames()
: Residue
- setLowMassIons()
: Residue
- setMagneticFieldStrength()
: MassAnalyzer
- setMandatoryExportColumns()
: TableView
- setMapIndex()
: FeatureHandle::FeatureHandleMutable_
, FeatureHandle
- setMapper()
: Plot1DWidget
, Plot2DWidget
, Plot3DWidget
, PlotCanvas
, PlotWidget
- setMapping()
: LinearInterpolation< Key, Value >
- setMapping_0()
: BilinearInterpolation< Key, Value >
- setMapping_1()
: BilinearInterpolation< Key, Value >
- setMappingRules()
: CVMappings
- setMargin()
: AxisWidget
- setMass()
: Modification
, Sample
- setMassAnalyzers()
: Instrument
- setMassDiff()
: ChargePair
- setMassShift()
: Tagging
- setMasstraceIntensities()
: AccurateMassSearchResult
- setMassType()
: MascotInfile
- setMassTypeFragment()
: SequestInfile
- setMassTypeParent()
: SequestInfile
- setMatchedWhitelist()
: FuzzyStringComparator
- setMatchingHMDBids()
: AccurateMassSearchResult
- setMatchingIndex()
: AccurateMassSearchResult
- setMatchingScore()
: SpectralMatch
- setMatchingSpectrumIndex()
: SpectralMatch
- setMatchPeakAllowedError()
: SequestInfile
- setMatchPeakCount()
: SequestInfile
- setMatchPeakTolerance()
: SequestInfile
- setMatrix()
: Matrix< Value >
, NeedlemanWunsch
- setMax()
: DIntervalBase< D >
, RangeBase
- setMaxAAACount()
: ACTrie
- setMaxAAPerModPerPeptide()
: SequestInfile
- setMaxCharge()
: Tagger
- setMaxDataPoolSize()
: PeakFileOptions
- setMaxFloat()
: Param
- setMaxFloat_()
: TOPPBase
- setMaxInt()
: Param
- setMaxInt_()
: TOPPBase
- setMaxIntensity()
: RangeIntensity
- setMaxInternalCleavageSites()
: SequestInfile
- setMaxIsotope()
: CoarseIsotopePatternGenerator
- setMaxIsotopeIndex()
: FLASHDeconvHelperStructs::PrecalculatedAveragine
- setMaxLength()
: LogWindow
- setMaxMMCount()
: ACTrie
- setMaxMobility()
: RangeMobility
- setMaxModifications()
: ModificationDefinitionsSet
- setMaxModsPerPeptide()
: SequestInfile
- setMaxMZ()
: RangeMZ
- setMaxNumberOfThreads()
: TOPPBase
- setMaxOccurrences()
: ModificationDefinition
- setMaxPrecursorCharge()
: XTandemInfile
- setMaxPTMsize()
: InspectInfile
- setMaxRT()
: RangeRT
- setMaxValidEValue()
: XTandemInfile
- setMaxX()
: DIntervalBase< D >
- setMaxY()
: DIntervalBase< D >
- setMean()
: BasicStatistics< RealT >
- setMergeLayers()
: TOPPViewOpenDialog
- setMessage()
: GlobalExceptionHandler
- setMetaData()
: MzTab
, MzTabM
- setMetadataOnly()
: FeatureFileOptions
, PeakFileOptions
- setMetaValue()
: IdentificationData
, MetaInfoInterface
, MRMFeatureFilter
- setMethodOfCombination()
: AcquisitionInfo
- setMin()
: DIntervalBase< D >
, RangeBase
- setMinFloat()
: Param
- setMinFloat_()
: TOPPBase
- setMinimumSize_()
: IMSIsotopeDistribution
- setMinInt()
: Param
- setMinInt_()
: TOPPBase
- setMinIntensity()
: RangeIntensity
- setMinMax()
: DIntervalBase< D >
- setMinMaxOfRange()
: Plot1DGoToDialog
, Plot2DGoToDialog
- setMinMobility()
: RangeMobility
- setMinMZ()
: RangeMZ
- setMinRT()
: RangeRT
- setMinX()
: DIntervalBase< D >
- setMinY()
: DIntervalBase< D >
- setMirrorModeActive()
: Plot1DCanvas
- setMissedCleavages()
: EnzymaticDigestion
, MascotInfile
- setMobility()
: MobilityPeak1D
, MobilityPeak2D
- setMobilityData()
: LayerDataIonMobility
- setModel()
: Instrument
- setModelData()
: ListEditorDelegate
, ParamEditorDelegate
- setModification()
: AASequence
, ModificationDefinition
, Residue
- setModificationByDiffMonoMass()
: AASequence
, Residue
- setModificationDefinitionsSet()
: OMSSAXMLFile
- setModificationIdentifier()
: MzTabModification
- setModifications()
: MascotInfile
, ModificationDefinitionsSet
, PepNovoInfile
, ProteinHit
, XTandemInfile
- setModificationsPerPeptide()
: InspectInfile
- setModified()
: ParamEditor
- setMonoisotopicMass()
: PeakGroup
- setMonoMass()
: ResidueModification
, Ribonucleotide
- setMonoWeight()
: Element
, Residue
- setMS1Map()
: MRMFeatureFinderScoring
- setMSData()
: FeatureFinderAlgorithmMetaboIdent
, FeatureFinderIdentificationAlgorithm
- setMSDataConsumer()
: MzMLHandler
, MzXMLHandler
- setMSFile()
: MzTabSpectraRef
- setMSFileSection()
: ExperimentalDesign
- setMSGFID()
: DigestionEnzymeProtein
- setMSLevel()
: MSSpectrum
- setMSLevels()
: PeakFileOptions
- setMSmallMoleculeEvidenceSectionRows()
: MzTabM
- setMSmallMoleculeFeatureSectionRows()
: MzTabM
- setMSmallMoleculeSectionRows()
: MzTabM
- setMulticharge()
: InspectInfile
- setMZ()
: ChromatogramPeak
, MobilityPeak2D
, Peak1D
, Peak2D
, PeptideIdentification
, Product
, TraMLProduct
- setMz32Bit()
: PeakFileOptions
- setMZArray()
: Spectrum
, OSSpectrum
- setMZErrorPPM()
: AccurateMassSearchResult
- setMZRange()
: FeatureFileOptions
, PeakFileOptions
- setName()
: ContactPerson
, CVReference
, CVTerm
, DefaultParamHandler
, DigestionEnzyme
, Element
, GlobalExceptionHandler
, IMSElement
, IncludeExcludeTarget
, Instrument
, IdentificationHit
, LayerDataBase
, MetaInfoDescription
, ModelDescription< D >
, MSChromatogram
, MSSpectrum
, MzTabParameter
, ReactionMonitoringTransition
, Residue
, ResidueModification
, Ribonucleotide
, Sample
, Software
- setNameAttribute()
: SemanticValidator
- setNameOfFile()
: SourceFile
- setNameSuffix()
: LayerDataBase
- setNaN()
: MzTabDouble
, MzTabInteger
- setNativeID()
: ChromatogramSettings
, ReactionMonitoringTransition
, SpectrumSettings
- setNativeIDType()
: SourceFile
- setNativeIDTypeAccession()
: SourceFile
- setNeutralLossAverageMasses()
: ResidueModification
- setNeutralLossDiffFormulas()
: ResidueModification
- setNeutralLossesForIons()
: SequestInfile
- setNeutralLossMonoMasses()
: ResidueModification
- setNewCode()
: Ribonucleotide
- setNoiseSuppression()
: XTandemInfile
- setNominalMass()
: IMSIsotopeDistribution
- setNormalizedIntensityValues()
: ConsensusMapNormalizerAlgorithmQuantile
- setNormalizeXcorr()
: SequestInfile
- setNPoints()
: AbsoluteQuantitationMethod
- setNrMS1Spectra()
: SwathQC
- setNTermGain()
: DigestionEnzymeProtein
- setNTerminalModification()
: AASequence
- setNTerminalModificationByDiffMonoMass()
: AASequence
- setNTermLossFormulas()
: Residue
- setNTermLossNames()
: Residue
- setNucleicAcidSectionRows()
: MzTab
- setNucleotideReadingFrame()
: SequestInfile
- setNull()
: MzTabBoolean
, MzTabDouble
, MzTabDoubleList
, MzTabInteger
, MzTabIntegerList
, MzTabModification
, MzTabModificationList
, MzTabParameter
, MzTabParameterList
, MzTabSpectraRef
, MzTabString
, MzTabStringList
- setNumber()
: Sample
- setNumberOfMissedCleavages()
: XTandemInfile
- setNumberOfThreads()
: XTandemInfile
- setNumpressConfigurationFloatDataArray()
: PeakFileOptions
- setNumpressConfigurationIntensity()
: PeakFileOptions
- setNumpressConfigurationMassTime()
: PeakFileOptions
- setObjective()
: LPWrapper
- setObjectiveSense()
: LPWrapper
- setObservedIntensity()
: AccurateMassSearchResult
- setObservedMZ()
: AccurateMassSearchResult
- setObservedPrecursorMass()
: SpectralMatch
- setObservedPrecursorRT()
: SpectralMatch
- setObservedRT()
: AccurateMassSearchResult
- setObservedSpectrumIndex()
: SpectralMatch
- setObservedSpectrumNativeID()
: SpectralMatch
- setOffset()
: BiGaussModel
, EmgModel
, ExtendedIsotopeModel
, GaussModel
, InterpolationModel
, IsotopeModel
, LinearInterpolation< Key, Value >
- setOffset_0()
: BilinearInterpolation< Key, Value >
- setOffset_1()
: BilinearInterpolation< Key, Value >
- setOligonucleotideSectionRows()
: MzTab
- setOMSSAID()
: DigestionEnzymeProtein
- setOnDiscPeakData()
: LayerDataChrom
, LayerDataPeak
- setOneLetterCode()
: Residue
- setOpenMPNumThreads()
: OpenMSBuildInfo
- setOptions()
: FeatureXMLFile
, FileHandler
, IndexedMzMLFileLoader
, ConsensusXMLHandler
, FeatureXMLHandler
, MzDataHandler
, MzMLHandler
, MzXMLHandler
, MzDataFile
, MzMLFile
, MzXMLFile
- setOrder()
: IonDetector
, IonSource
, MassAnalyzer
- setOrganism()
: Sample
- setOrigin()
: ResidueModification
, Ribonucleotide
- setOriginalSpectrum()
: DeconvolvedSpectrum
- setOriginAnnotationMode_()
: IDRipper
- setOSMSectionRows()
: MzTab
- setOutDir()
: TOPPASScene
- setOutputFilename()
: XTandemInfile
- setOutputFolderName()
: TOPPASOutputVertex
- setOutputLines()
: SequestInfile
- setOutputResults()
: XTandemInfile
- setOverallQuality()
: Feature
- setPairValue_()
: MRMFeatureQCFile
- setParam()
: TOPPViewPrefDialog
, ModelDescription< D >
, TOPPASToolVertex
- setParameters()
: DefaultParamHandler
- setParameters_()
: QTClusterFinder
- setParseUnknownScores()
: PepXMLFile
- setPartialSequence()
: SequestInfile
- setPassThreshold()
: IdentificationHit
- setPathToFile()
: SourceFile
- setPeakAnnotations()
: PeptideHit
- setPeakData()
: LayerDataPeak
- setPeakGroups()
: DeconvolvedSpectrum
- setPeakMassTolerance()
: InspectInfile
, MascotInfile
, SequestInfile
- setPen()
: Annotations1DContainer
- setPenalty()
: NeedlemanWunsch
- setPeptideEvidence_()
: XQuestResultXMLHandler
- setPeptideEvidences()
: PeptideHit
- setPeptideGroupLabel()
: Peptide
- setPeptideIdentifications()
: BaseFeature
, SpectrumSettings
- setPeptideIds()
: IPeptideIds
, LayerDataFeature
, LayerDataIdent
- setPeptideMassUnit()
: SequestInfile
- setPeptideRef()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setPeptides()
: TargetedExperiment
- setPeptideScoresForMap_()
: IDScoreGetterSetter
- setPeptideScoresFromMap_()
: IDScoreGetterSetter
- setPeptideSectionRows()
: MzTab
- setPercentage()
: Gradient
- setPh()
: Digestion
- setPipelineRunning()
: TOPPASScene
- setPka()
: Residue
- setPkb()
: Residue
- setPkc()
: Residue
- setPlotWidget()
: PlotCanvas
- setPluginPath()
: TVToolDiscovery
- setPolarity()
: InstrumentSettings
, IonSource
- setPos()
: ChromatogramPeak
, MobilityPeak1D
, Peak1D
- setPosition()
: Annotation1DCaret< DataPoint >
, Annotation1DPeakItem< DataPoint >
, Annotation1DTextItem
, Annotation1DVerticalLineItem
, ChromatogramPeak
, FASTAFile
, MobilityPeak1D
, MobilityPeak2D
, Peak1D
, Peak2D
- setPositionsAndParameters()
: MzTabModification
- setPossibleChargeStates()
: Precursor
- setPrechosenItems()
: ListFilterDialog
- setPrecision()
: Weights
- setPrecursor()
: ChromatogramSettings
, DeconvolvedSpectrum
- setPrecursorAdduct()
: SpectralMatch
- setPrecursorCVTermList()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setPrecursorErrorType()
: XTandemInfile
- setPrecursorIntensity()
: DeconvolvedSpectrum
- setPrecursorMassErrorUnit()
: XTandemInfile
- setPrecursorMassTolerance()
: InspectInfile
, MascotInfile
, SequestInfile
- setPrecursorMassToleranceMinus()
: XTandemInfile
- setPrecursorMassTolerancePlus()
: XTandemInfile
- setPrecursorMZ()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setPrecursorMZSelectedIon()
: PeakFileOptions
- setPrecursorPeakGroup()
: DeconvolvedSpectrum
- setPrecursors()
: SpectrumSettings
- setPrecursorScanNumber()
: DeconvolvedSpectrum
- setPrediction()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setPreferredFixedModifications()
: PepXMLFile
- setPreferredVariableModifications()
: PepXMLFile
- setPrefix()
: LogStream
- setPresenceAndScanEventNumber_()
: Ms2SpectrumStats
- setPressure()
: HPLC
- setPrimaryID()
: BaseFeature
- setPrimaryIdentifier()
: SpectralMatch
- setPrimaryMSRunPath()
: ConsensusMap
, FeatureMap
, ProteinIdentification
- setPrintDuplicateReferences()
: SequestInfile
- setProcessingActions()
: DataProcessing
- setProduct()
: ChromatogramSettings
, ReactionMonitoringTransition
- setProductCVTermList()
: IncludeExcludeTarget
- setProductMZ()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setProducts()
: SpectrumSettings
- setProgress()
: GUIProgressLoggerImpl
, ProgressLogger::ProgressLoggerImpl
, ProgressLogger
- setProtein()
: OSWData
- setProteinAccession()
: PeptideEvidence
- setProteinIdentifications()
: ConsensusMap
, ExperimentalSettings
, FeatureMap
- setProteinMassFilter()
: SequestInfile
- setProteins()
: TargetedExperiment
- setProteinSectionRows()
: MzTab
- setPSIID()
: DigestionEnzymeProtein
- setPSIMODAccession()
: ResidueModification
- setPSMSectionRows()
: MzTab
- setPublications()
: TargetedExperiment
- setQuality()
: BaseFeature
, Feature
- setQuantifyingTransition()
: ReactionMonitoringTransition
, LightTransition
- setQuantMethod()
: MassTrace
- setQuantMethods()
: AbsoluteQuantitation
- setQuery()
: ACTrieState
- setQueryMass()
: AccurateMassSearchResult
- setQuerySpectra()
: MascotRemoteQuery
- setQvalue()
: PeakGroup
- setRange()
: DimBase
, DimIM
, DimINT
, DimMZ
, DimRT
, MRMFeatureFilter
, Plot1DGoToDialog
, Plot2DGoToDialog
- setRank()
: IdentificationHit
, PeptideHit
, ProteinHit
- setRANSACParams()
: MZTrafoModel
- setRANSACSeed()
: MZTrafoModel
- setRatios()
: ConsensusFeature
- setReagentName()
: Modification
- setRecycling()
: TOPPASVertex
- setReference()
: FeatureGroupingAlgorithmUnlabeled
, MapAlignmentAlgorithmIdentification
, MapAlignmentAlgorithmPoseClustering
- setReflectronState()
: MassAnalyzer
- setRegEx()
: DigestionEnzyme
- setRegExDescription()
: DigestionEnzyme
- setRemovePrecursorNearPeaks()
: SequestInfile
- setRepAbsCharge()
: PeakGroup
- setRequiredModules()
: PythonModuleRequirement
- setRequirementLevel()
: CVMappingRule
- setResidueSets()
: Residue
- setResiduesInUpperCase()
: SequestInfile
- setResolution()
: IonDetector
, MassAnalyzer
- setResolutionMethod()
: MassAnalyzer
- setResolutionType()
: MassAnalyzer
- setRestrictions()
: ListEditorDelegate
- setRetentionTime()
: IncludeExcludeTarget
, ReactionMonitoringTransition
- setRichText()
: Annotation1DCaret< DataPoint >
- setRightSplitter()
: HistogramDialog
, HistogramWidget
- setRoundMasses()
: CoarseIsotopePatternGenerator
- setRowBounds()
: LPWrapper
- setRowName()
: LPWrapper
- setRT()
: ChromatogramPeak
, Mobilogram
, MSSpectrum
, Peak2D
, PeptideIdentification
, RetentionTime
- setRTRange()
: FeatureFileOptions
, PeakFileOptions
- setRunID()
: OSWData
- setSample()
: ExperimentalSettings
- setSamples()
: BiGaussModel
, EmgModel
, ExtendedIsotopeModel
, GaussModel
, InterpolationModel
, IsotopeModel
- setSampleSection()
: ExperimentalDesign
- setSaveFileName()
: TOPPASScene
- setScale()
: EuclideanSimilarity
, LinearInterpolation< Key, Value >
- setScale_0()
: BilinearInterpolation< Key, Value >
- setScale_1()
: BilinearInterpolation< Key, Value >
- setScalingFactor()
: InterpolationModel
- setScanDirection()
: MassAnalyzer
- setScanEventNumber_()
: Ms2SpectrumStats
- setScanLaw()
: MassAnalyzer
- setScanMode()
: InstrumentSettings
- setScanNumber()
: PeakGroup
- setScanRate()
: MassAnalyzer
- setScanRegExp_()
: SpectrumLookup
- setScanTime()
: MassAnalyzer
- setScanWindows()
: InstrumentSettings
- setScopePath()
: CVMappingRule
- setScore()
: FeatureHypothesis
, PeptideHit
, ProteinHit
- setScore_()
: IDScoreGetterSetter
- setScoreAndMoveIfTarget_()
: IDScoreGetterSetter
- setScoreHigherWorse_()
: IDScoreGetterSetter
- setScoreHigherWorseAndMoveIfTarget_()
: IDScoreGetterSetter
- setScores()
: MRMFeature
- setScores_()
: IDScoreGetterSetter
- setScoresAndRemoveDecoys_()
: IDScoreGetterSetter
- setScoresHigherWorse_()
: IDScoreGetterSetter
- setScoresHigherWorseAndRemoveDecoys_()
: IDScoreGetterSetter
- setScoreType()
: PeptideIdentification
, ProteinIdentification
- setScoreType_()
: IDScoreGetterSetter
- setScoreTypeAndSettings_()
: BayesianProteinInferenceAlgorithm
- setSearchEngine()
: ProteinIdentification
- setSearchEngineVersion()
: ProteinIdentification
- setSearchParameters()
: ProteinIdentification
- setSearchType()
: MascotInfile
- setSecondaryIdentifier()
: SpectralMatch
- setSectionDescription()
: Param
- setSeed()
: DecoyGenerator
, RANSAC< TModelType >
, UniqueIdGenerator
- setSeeds()
: FeatureFinderAlgorithm
, FeatureFinderAlgorithmPicked
- setSelected()
: Annotation1DItem
- setSelectedPen()
: Annotations1DContainer
- setSemiCleavage()
: XTandemInfile
- setSeparator()
: MzTabStringList
- setSequence()
: IMSElement
, NASequence
, PeptideHit
, ProteinHit
- setSequenceHeaderFilter()
: SequestInfile
- setShowFragmentIons()
: SequestInfile
- setSideChainBasicity()
: Residue
- setSignificanceThreshold()
: PeptideIdentification
, ProteinIdentification
- setSingleMass()
: Adduct
- setSize()
: SaveImageDialog
- setSizeOnly()
: FeatureFileOptions
, FeatureXMLHandler
- setSizeRatio_()
: SaveImageDialog
- setSkipXMLChecks()
: IndexedMzMLHandler
, MzMLSpectrumDecoder
, OnDiscMSExperiment
, PeakFileOptions
- setSmallMoleculeSectionRows()
: MzTab
- setSMILESString()
: SpectralMatch
- setSmoothedIntensities()
: MassTrace
- setSNR()
: PeakGroup
- setSoftware()
: DataProcessing
, Instrument
, TargetedExperiment
- setSortChromatogramsByRT()
: PeakFileOptions
- setSortSpectraByMZ()
: PeakFileOptions
- setSourceClassification()
: ResidueModification
- setSourceFeatureIndex()
: AccurateMassSearchResult
- setSourceFile()
: ChromatogramSettings
, SpectrumSettings
- setSourceFiles()
: ExperimentalSettings
, TargetedExperiment
- setSourceOutParam()
: TOPPASEdge
- setSourceVertex()
: TOPPASEdge
- setSpecificity()
: EnzymaticDigestion
- setSpecificityType()
: Modification
- setSpecRef()
: MzTabSpectraRef
- setSpecRefFile()
: MzTabSpectraRef
- setSpectra()
: InspectInfile
, MSExperiment
- setSpectraDataRef()
: SpectrumMetaDataLookup
- setSpectraProcessingFunc()
: MSDataTransformingConsumer
- setSpectrumIdentifications()
: Identification
- setSpectrumReference()
: PeptideIdentification
- setSqlRunID()
: MSExperiment
- setSqlSourceFile()
: OSWData
- setStandardEnzymeInfo_()
: SequestInfile
- setStart()
: PeptideEvidence
- setState()
: Sample
- setStatus()
: MetaDataBrowser
- setStrictFlag()
: MRMFeatureFinderScoring
- setStringDataArrays()
: MSChromatogram
, MSSpectrum
, ProteinIdentification::ProteinGroup
- setSubordinates()
: Feature
- setSubsamples()
: Sample
- setSum()
: BasicStatistics< RealT >
- setSumFormula()
: SpectralMatch
- setSymbol()
: Element
- setSynonyms()
: DigestionEnzyme
, Residue
, ResidueModification
- setTabText()
: EnhancedTabBar
- setTabWidth()
: FuzzyStringComparator
- setTag()
: SemanticValidator
- setTagCount()
: InspectInfile
- setTargetCVTerms()
: TargetedExperiment
- setTargetDummyType()
: FLASHDeconvAlgorithm
, PeakGroup
- setTargeted()
: PeakGroup
- setTargetInParam()
: TOPPASEdge
- setTargetMasses()
: FLASHDeconvAlgorithm
- setTargetMetaValue()
: TargetedExperiment
- setTargetVertex()
: TOPPASEdge
- setTaxon()
: XTandemInfile
- setTaxonomy()
: MascotInfile
- setTaxonomyFilename()
: XTandemInfile
- setTemperature()
: Digestion
, HPLC
- setTermName()
: CVMappingTerm
- setTermSpecificity()
: ResidueModification
, Ribonucleotide
- setText()
: Annotation1DItem
- setTextBox()
: Plot1DCanvas
- setTextOffset()
: Annotation1DVerticalLineItem
- setThreeLetterCode()
: Residue
- setThreePrimeGain()
: DigestionEnzymeRNA
- setThreePrimeMod()
: NASequence
- setThreshold()
: ClusterHierarchical
, FineIsotopePatternGenerator
- setTickLevel()
: AxisWidget
- setTicks()
: Annotation1DDistanceItem
- setTime()
: DateTime
- setTimeArray()
: Chromatogram
, OSChromatogram
- setTitle()
: PythonModuleRequirement
- setToEnd_()
: MatchedIterator< CONT_T, TRAIT, CONST_T >
- setTOFTotalPathLength()
: MassAnalyzer
- setTool_()
: ToolsDialog
- setToolDescriptions()
: ToolDescriptionHandler
- setTopoNr()
: TOPPASOutputVertex
, TOPPASToolVertex
, TOPPASVertex
- setTopoSortMarked()
: TOPPASVertex
- setToString()
: FuzzyStringComparator::InputLine
- setTotalProbability()
: FineIsotopePatternGenerator
- setTransformationModel()
: AbsoluteQuantitationMethod
- setTransformationModelParams()
: AbsoluteQuantitationMethod
- setTransitionGroupID()
: MRMTransitionGroup< ChromatogramType, TransitionType >
- setTransitions()
: TargetedExperiment
- setType()
: ListEditorDelegate
, IonDetector
, MassAnalyzer
, SpectrumSettings
- setTypeName()
: ListEditorDelegate
, ListEditor
- setULOD()
: AbsoluteQuantitationMethod
- setULOQ()
: AbsoluteQuantitationMethod
- setUnassignedPeptideIdentifications()
: ConsensusMap
, FeatureMap
- setUniModRecordId()
: ResidueModification
- setUniqueId()
: UniqueIdInterface
- setUnit()
: CVTerm
, DataValue
, MetaInfoRegistry
- setUnitAccessionAttribute()
: SemanticValidator
- setUnitNameAttribute()
: SemanticValidator
- setUnitType()
: DataValue
- setup()
: SimpleSVM
- setURL()
: ContactPerson
- setUrl()
: NetworkGetRequest
- setUsePPM()
: CalibrationData
- setUseTerm()
: CVMappingTerm
- setUseTermName()
: CVMappingTerm
- setValidFormats_()
: TOPPBase
- setValidStrings()
: Param
- setValidStrings_()
: TOPPBase
- setValue()
: CVTerm
, DistanceMatrix< Value >
, Matrix< Value >
, MetaInfo
, MzTabParameter
, Param
- setValueAttribute()
: SemanticValidator
- setValueFromFile()
: DigestionEnzyme
, DigestionEnzymeProtein
, DigestionEnzymeRNA
- setValueQuick()
: DistanceMatrix< Value >
- setVariableModifications()
: MascotInfile
- setVariance()
: BasicStatistics< RealT >
- setVariant()
: Tagging
- setVendor()
: Instrument
- setVerbose()
: TVToolDiscovery
- setVerboseLevel()
: FuzzyStringComparator
- setVersion()
: Software
- setVisibleArea()
: PlotCanvas
- setVisibleArea1D()
: TVIdentificationViewController
- setVisibleAreaX()
: PlotCanvas
- setVisibleAreaY()
: PlotCanvas
- setVolume()
: Sample
- setWhitelist()
: FuzzyStringComparator
- setWidgetsfromFDDefaultParam_()
: FLASHDeconvTabWidget
- setWidth()
: BaseFeature
, FeatureHandle
- setWriteIndex()
: PeakFileOptions
- setWriteSupplementalData()
: PeakFileOptions
- setX()
: DPosition< D, TCoordinateType >
- setXLabel()
: Plot3DOpenGLCanvas
- setXTandemID()
: DigestionEnzymeProtein
- setY()
: DPosition< D, TCoordinateType >
- setYLabel()
: Plot3DOpenGLCanvas
- setZLabel()
: Plot3DOpenGLCanvas
- setZoomScan()
: InstrumentSettings
- shape()
: TOPPASEdge
, TOPPASVertex
- shared_xerces_ptr()
: shared_xerces_ptr< T >
- shift()
: RangeBase
- shiftedIonsToString()
: RNPxlFragmentAnnotationHelper
- shiftedToPHFA()
: RNPxlFragmentAnnotationHelper
- shortDimensionName()
: MobilityPeak2D
, Peak2D
- shortDimensionNameIM()
: MobilityPeak2D
- shortDimensionNameMZ()
: MobilityPeak2D
, Peak2D
- shortDimensionNameRT()
: Peak2D
- shortDimensionUnit()
: MobilityPeak2D
, Peak2D
- shortDimensionUnitIM()
: MobilityPeak2D
- shortDimensionUnitMZ()
: MobilityPeak2D
, Peak2D
- shortDimensionUnitRT()
: Peak2D
- show()
: EnhancedTabBar
- showAboutDialog()
: FLASHDeconvWizardBase
, QApplicationTOPP
, SwathWizardBase
, TOPPASBase
- showAllHits_()
: MetaDataBrowser
- showAsWindow_()
: TOPPASBase
- showChromatograms()
: TVDIATreeTabController
- showChromatogramsAsNew1D()
: DataSelectionTabs
, Plot2DCanvas
, Plot2DWidget
, SpectraTreeTab
, TVDIATreeTabController
, TVSpectraViewController
- showChromatogramsInCanvas_()
: TVDIATreeTabController
- showContextMenu()
: HistogramWidget
- showCurrentLayerPreferences()
: Plot1DCanvas
, Plot2DCanvas
, Plot3DCanvas
, PlotCanvas
- showCurrentPeaksAs2D()
: Plot1DCanvas
, Plot1DWidget
, Plot3DCanvas
, Plot3DWidget
, TOPPViewBase
- showCurrentPeaksAs3D()
: Plot1DCanvas
, Plot1DWidget
, Plot2DCanvas
, Plot2DWidget
, TOPPViewBase
- showCurrentPeaksAsDIA()
: Plot1DCanvas
, Plot1DWidget
, TOPPViewBase
- showCurrentPeaksAsIonMobility()
: Plot1DCanvas
, Plot1DWidget
, Plot2DCanvas
, Plot2DWidget
, TOPPViewBase
- showCursorStatus()
: TOPPASBase
, TOPPViewBase
- showDetails_()
: MetaDataBrowser
- showDocumentation()
: ParamEditor
- showFileDialog()
: InputFile
, InputFileList
, OutputDirectory
, TOPPASOutputFilesDialog
- showFileDialog_()
: PythonSelector
- showFilesDialog()
: TOPPASInputFileListVertex
- showGoToDialog()
: Plot1DWidget
, Plot2DWidget
, Plot3DWidget
, PlotWidget
, TOPPViewBase
- showGridLines()
: PlotCanvas
- showIntensityDistribution()
: PlotWidget
- showIOMappingDialog()
: TOPPASEdge
- showLegend()
: AxisWidget
, Plot1DWidget
, Plot3DCanvas
, Plot3DWidget
, PlotWidget
- showMetaData()
: PlotCanvas
- showMetaDistribution()
: PlotWidget
- showPipelineFinishedLogMessage()
: TOPPASBase
- showPlotWidgetInWindow()
: TOPPViewBase
- showPreferences()
: TOPPViewBase
- showProjections()
: Plot2DCanvas
- showProjections_()
: Plot2DWidget
- showRange()
: Plot2DGoToDialog
- showSpectrumAlignmentDialog()
: TOPPViewBase
- showSpectrumAsNew1D()
: DataSelectionTabs
, Plot2DCanvas
, Plot2DWidget
, SpectraTreeTab
, TVIdentificationViewController
, TVSpectraViewController
- showSpectrumBrowser()
: TOPPViewBase
- showSpectrumGenerationDialog()
: TOPPViewBase
- showSpectrumMetaData()
: SpectraTreeTab
, TOPPViewBase
- showSplitters()
: HistogramWidget
- showStatistics()
: PlotWidget
- showStatusMessage()
: TOPPASBase
, TOPPViewBase
- showTOPPDialog()
: TOPPViewBase
- showTOPPDialog_()
: TOPPViewBase
- showURL()
: TOPPASBase
- showWindow()
: TOPPViewBase
- shufflePeptide()
: MRMDecoy
- shufflePeptides()
: DecoyGenerator
- SignalToNoiseEstimator()
: SignalToNoiseEstimator< Container >
- SignalToNoiseEstimatorMeanIterative()
: SignalToNoiseEstimatorMeanIterative< Container >
- SignalToNoiseEstimatorMedian()
: SignalToNoiseEstimatorMedian< Container >
- SignalToNoiseEstimatorMedianRapid()
: SignalToNoiseEstimatorMedianRapid
- SignalToNoiseOpenMS()
: SignalToNoiseOpenMS< ContainerT >
- simpleExtractChromatograms_()
: OpenSwathCalibrationWorkflow
- simpleFindBestFeature()
: OpenSwathHelper
- SimplePeak()
: SimpleTSGXLMS::SimplePeak
- SimpleSearchEngineAlgorithm()
: SimpleSearchEngineAlgorithm
- SimpleSVM()
: SimpleSVM
- SimpleTSGXLMS()
: SimpleTSGXLMS
- simplify()
: String
- simpson_()
: PeakIntegrator
- simulateNoReRanking()
: DBSuitability::SuitabilityData
- SingleLinkage()
: SingleLinkage
- SiriusExportAlgorithm()
: SiriusExportAlgorithm
- SiriusTargetDecoySpectra()
: SiriusFragmentAnnotation::SiriusTargetDecoySpectra
- size()
: KDTree< __K, _Val, _Acc, _Dist, _Cmp, _Alloc >
, AASequence
, CalibrationData
, ConsensusFeature
, ConstRefVector< ContainerT >
, DataFilters
, DeconvolvedSpectrum
, DPosition< D, TCoordinateType >
, ExposedVector< VectorElement >
, FASTAContainer< TFI_File >
, FASTAContainer< TFI_Vector >
, FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern
, HashGrid< Cluster >
, IMSAlphabet
, IMSIsotopeDistribution
, Weights
, IsotopeDistribution
, KDTreeFeatureMaps
, Histogram< ValueType, BinSizeType >
, Mobilogram
, MRMFeatureOpenMS
, MRMTransitionGroup< ChromatogramType, TransitionType >
, MSExperiment
, MultiGradient
, MultiplexFilteredMSExperiment
, MultiplexFilteredPeak
, NASequence
, OnDiscMSExperiment
, Param::ParamNode
, Param
, PeakGroup
, QCBase::SpectraMap
, QTCluster
, SplineInterpolatedPeaks
, StringView
, TOPPASVertex::TOPPASFilenames
, TransitionGroupOpenMS< SpectrumT, TransitionT >
, IMRMFeature
, ITransitionGroup
, MockMRMFeature
, MockTransitionGroup
- sizeHint()
: ColorSelector
- sizeProfile()
: MultiplexFilteredPeak
- SizeUnderflow()
: SizeUnderflow
- smartFileNames_()
: TOPPASToolVertex
- smoothData()
: ElutionPeakDetection
, LowessSmoothing
- snapShot_()
: StopWatch
- snapToGrid()
: TOPPASScene
- Software()
: Software
- SoftwareVisualizer()
: SoftwareVisualizer
- solve()
: BSpline2d
, LPWrapper
, NonNegativeLeastSquaresSolver
- solveNNLS_()
: IsobaricIsotopeCorrector
- SolverParam()
: LPWrapper::SolverParam
- somethingHasChanged()
: TOPPASEdge
, TOPPASVertex
- SONARScoring()
: SONARScoring
- sort()
: DeconvolvedSpectrum
, ROCCurve
, MSSpectrum
, PeakGroup
, PeptideIdentification
, ProteinIdentification
- sort_()
: ExperimentalDesign
, IsotopeDistribution
- sortByComparator()
: ConstRefVector< ContainerT >
- sortByIntensity()
: ConsensusMap
, ConstRefVector< ContainerT >
, FeatureMap
, IsotopeDistribution
, Mobilogram
, MSChromatogram
, MSSpectrum
- sortByIonMobility()
: MSSpectrum
- sortByMaps()
: ConsensusMap
- sortByMass()
: IsotopeDistribution
- sortByMZ()
: ConsensusMap
, FeatureMap
- sortByNames()
: IMSAlphabet
- sortByOverallQuality()
: FeatureMap
- sortByPosition()
: ConsensusMap
, ConstRefVector< ContainerT >
, FeatureMap
, Mobilogram
, MSChromatogram
, MSSpectrum
- sortByPositionPresorted()
: MSSpectrum
- sortByPrecursorInt()
: MetaboTargetedAssay
- sortByQscore()
: DeconvolvedSpectrum
- sortByQuality()
: ConsensusMap
- sortByRank()
: PeptideIdentification
- sortByRT()
: CalibrationData
, ConsensusMap
, FeatureMap
- sortBySize()
: ConsensusMap
- sortByUnique_()
: ProteinInference
- sortByValues()
: IMSAlphabet
- sortChromatograms()
: MSExperiment
- SortExtractionCoordinatesByMZ()
: ChromatogramExtractorAlgorithm::ExtractionCoordinates
- SortExtractionCoordinatesReverseByMZ()
: ChromatogramExtractorAlgorithm::ExtractionCoordinates
- sortPeptideIdentifications()
: BaseFeature
- sortPeptideIdentificationsByMapIndex()
: ConsensusMap
- sortPSM_()
: MzTabFile
- sortSpectra()
: MSExperiment
- sortSpectrumByMZ()
: SpectrumAddition
- sortTransitionsByName()
: TargetedExperiment
- sortTransitionsByProductMZ()
: TargetedExperiment
- SourceFile()
: SourceFile
- SourceFileVisualizer()
: SourceFileVisualizer
- sourceHasChanged()
: TOPPASEdge
- spatiallyGreaterEqual()
: DPosition< D, TCoordinateType >
- spatiallyLessEqual()
: DPosition< D, TCoordinateType >
- SpecArrayFile()
: SpecArrayFile
- SpectraDistance_()
: SpectraMerger::SpectraDistance_
- SpectraIDViewTab()
: SpectraIDViewTab
- SpectralMatch()
: SpectralMatch
- SpectraMap()
: QCBase::SpectraMap
- SpectraMerger()
: SpectraMerger
- spectrastAnnotationExtract()
: TransitionTSVFile
- spectrastRTExtract()
: TransitionTSVFile
- SpectraSTSimilarityScore()
: SpectraSTSimilarityScore
- SpectraTreeTab()
: SpectraTreeTab
- Spectrum()
: Spectrum
- SpectrumAccessOpenMS()
: SpectrumAccessOpenMS
- SpectrumAccessOpenMSCached()
: SpectrumAccessOpenMSCached
- SpectrumAccessOpenMSInMemory()
: SpectrumAccessOpenMSInMemory
- SpectrumAccessQuadMZTransforming()
: SpectrumAccessQuadMZTransforming
- SpectrumAccessSqMass()
: SpectrumAccessSqMass
- SpectrumAccessTransforming()
: SpectrumAccessTransforming
- SpectrumAlignment()
: SpectrumAlignment
- SpectrumAlignmentDialog()
: SpectrumAlignmentDialog
- SpectrumAlignmentScore()
: SpectrumAlignmentScore
- SpectrumAnnotator()
: SpectrumAnnotator
- SpectrumCheapDPCorr()
: SpectrumCheapDPCorr
- spectrumContextMenu_()
: SpectraTreeTab
- SpectrumCount()
: SpectrumCount
- spectrumDeselected()
: SpectraIDViewTab
- spectrumDoubleClicked()
: SpectraTreeTab
- SpectrumIdentification()
: SpectrumIdentification
- SpectrumLookup()
: SpectrumLookup
- SpectrumMeta()
: SpectrumMeta
- SpectrumMetaData()
: SpectrumMetaDataLookup::SpectrumMetaData
- SpectrumMetaDataLookup()
: SpectrumMetaDataLookup
- SpectrumPrecursorComparator()
: SpectrumPrecursorComparator
- spectrumSearchText_()
: DIATreeTab
, SpectraTreeTab
- spectrumSelected()
: SpectraIDViewTab
, SpectraTreeTab
- SpectrumSettings()
: SpectrumSettings
- SpectrumSettingsVisualizer()
: SpectrumSettingsVisualizer
- SplineInterpolatedPeaks()
: SplineInterpolatedPeaks
- SplinePackage()
: SplinePackage
- split()
: ConsensusMap
, String
- split_quoted()
: String
- splitByFAIMSCV()
: IMDataConverter
- splitByMiddle()
: XQuestResultXMLHandler
- splitByNth()
: XQuestResultXMLHandler
- splitExperimentByIonMobility()
: IMDataConverter
- splitModificationBySpecifiedAA()
: MascotXMLHandler
- splitTransitionGroupsDetection_()
: MRMFeatureFinderScoring
- splitTransitionGroupsIdentification_()
: MRMFeatureFinderScoring
- SqliteConnector()
: SqliteConnector
- SqlOperationFailed()
: SqlOperationFailed
- SqMassFile()
: SqMassFile
- sqrt2pi()
: BasicStatistics< RealT >
- SqrtScaler()
: SqrtScaler
- squared_difference_counted()
: squared_difference_counted< _Tp, _Dist >
- StablePairFinder()
: StablePairFinder
- stairsInterpolation()
: MultiGradientSelector
- standard_stddev()
: mean_and_stddev
- standard_variance()
: mean_and_stddev
- start()
: FakeProcess
, StopWatch
- start_vertex()
: IDBoostGraph::dfs_ccsplit_visitor
- startElement()
: CVMappingFile
, IdXMLFile
, ConsensusXMLHandler
, FeatureXMLHandler
, MascotXMLHandler
, MzDataHandler
, MzIdentMLHandler
, MzMLHandler
, MzMLValidator
, MzXMLHandler
, ParamXMLHandler
, PTMXMLHandler
, SemanticValidator
, ToolDescriptionHandler
, TraMLHandler
, UnimodXMLHandler
, XMLHandler
, XQuestResultXMLHandler
, OMSSAXMLFile
, PepXMLFile
, PepXMLFileMascot
, ProtXMLFile
, QcMLFile
, TransformationXMLFile
, XTandemXMLFile
- startPos()
: TOPPASEdge
- startProgress()
: GUIProgressLoggerImpl
, ProgressLogger::ProgressLoggerImpl
, ProgressLogger
- static_for_each_base_()
: RangeManager< RangeBases >
- Statistics()
: PeptideAndProteinQuant::Statistics
- statistics_()
: FeatureFinderIdentificationAlgorithm
- stddev()
: mean_and_stddev
- SteinScottImproveScore()
: SteinScottImproveScore
- stepMaster_()
: ACTrie
- stepSpawn_()
: ACTrie
- stop()
: StopWatch
- store()
: AbsoluteQuantitationMethodFile
, AcquisitionInfoVisualizer
, AcquisitionVisualizer
, BaseVisualizerGUI
, CachedmzML
, ConsensusXMLFile
, ContactPersonVisualizer
, CsvFile
, DataProcessingVisualizer
, DigestionVisualizer
, DocumentIdentifierVisualizer
, DTA2DFile
, DTAFile
, EDTAFile
, ExperimentalSettingsVisualizer
, FASTAFile
, FeatureXMLFile
, GNPSMetaValueFile
, GNPSMGFFile
, GNPSQuantificationFile
, GradientVisualizer
, HPLCVisualizer
, IBSpectraFile
, IdXMLFile
, IndexedMzMLFileLoader
, InspectInfile
, InstrumentSettingsVisualizer
, InstrumentVisualizer
, OMSFileStore
, IonDetectorVisualizer
, IonSourceVisualizer
, KroenikFile
, MascotGenericFile
, MascotInfile
, MassAnalyzerVisualizer
, MetaInfoDescriptionVisualizer
, MetaInfoVisualizer
, ModificationVisualizer
, MRMFeatureQCFile
, MsInspectFile
, MSPFile
, MSPGenericFile
, MzDataFile
, MzIdentMLFile
, MzMLFile
, MzQCFile
, MzTabFile
, MzTabMFile
, MzXMLFile
, OMSFile
, ParamCTDFile
, ParamCWLFile
, ParamEditor
, ParamJSONFile
, ParamXMLFile
, PepNovoInfile
, PeptideHitVisualizer
, PeptideIdentificationVisualizer
, PepXMLFile
, PercolatorInfile
, PrecursorVisualizer
, ProductVisualizer
, ProteinHitVisualizer
, ProteinIdentificationVisualizer
, ProtXMLFile
, PTMXMLFile
, QcMLFile
, SampleVisualizer
, ScanWindowVisualizer
, SequestInfile
, SiriusMSFile
, SoftwareVisualizer
, SourceFileVisualizer
, SpecArrayFile
, SpectrumSettingsVisualizer
, SqMassFile
, TaggingVisualizer
, TextFile
, ToolDescriptionFile
, TOPPASResources
, TOPPASScene
, TraMLFile
, TransformationXMLFile
, XMassFile
, XQuestResultXMLFile
, CSVWriter
, DataMatrix
, IDataFrameWriter
- storeAdducts_()
: OMSFileStore
- storeAppliedProcessingStep_()
: OMSFileStore
- storeBaseFeature_()
: OMSFileStore
- storeBuffer()
: MzMLFile
- storeConsensusColumnHeaders_()
: OMSFileStore
- storeConsensusFeatures()
: FileHandler
- storeConsensusFeatures_()
: OMSFileStore
- storeCVTerm_()
: OMSFileStore
- storeDataProcessing_()
: OMSFileStore
- storeDBSearchParams_()
: OMSFileStore
- storeElements_()
: ElementDB
- storeExperiment()
: FileHandler
- storeFeatureAndSubordinates_()
: OMSFileStore
- storeFeatures()
: FileHandler
- storeFeatures_()
: OMSFileStore
- storeFullCM()
: LayerStoreDataConsensusMapAll
- storeFullData()
: LayerData1DChrom
, LayerData1DIonMobility
, LayerData1DPeak
, LayerDataBase
, LayerDataChrom
, LayerDataConsensus
, LayerDataFeature
, LayerDataIdent
, LayerDataIonMobility
, LayerDataPeak
- storeFullExperiment()
: LayerStoreDataPeakMapAll
- storeFullFM()
: LayerStoreDataFeatureMapAll
- storeFullIdent()
: LayerStoreDataIdentAll
- storeIdentifications()
: FileHandler
- storeIdentifiedCompounds_()
: OMSFileStore
- storeIdentifiedSequences_()
: OMSFileStore
- storeInformationFromDeconvolvedSpectrum()
: MassFeatureTrace
- storeINI_()
: ToolsDialog
, TOPPASToolConfigDialog
- storeInputFiles_()
: OMSFileStore
- storeISO()
: MSstatsFile
- storeIsotopes_()
: ElementDB
- storeJSON()
: SwathQC
- storeLFQ()
: MSstatsFile
, TriqlerFile
- storeMapMetaData_()
: OMSFileStore
- storeMetaInfo_()
: OMSFileStore
- storeMetaInfos_()
: OMSFileStore
- storeObservationMatches_()
: OMSFileStore
- storeObservations_()
: OMSFileStore
- storeOriginalRT_()
: MapAlignmentTransformer
- storeParentGroupSets_()
: OMSFileStore
- storeParentMatches_()
: OMSFileStore
- storeParentSequences_()
: OMSFileStore
- storePeptideReliabilityColumn()
: MzTabFile
- storePeptideUriColumn()
: MzTabFile
- storeProcessingSoftwares_()
: OMSFileStore
- storeProcessingSteps_()
: OMSFileStore
- storeProteinGoTerms()
: MzTabFile
- storeProteinReliabilityColumn()
: MzTabFile
- storeProteinUriColumn()
: MzTabFile
- storePSMReliabilityColumn()
: MzTabFile
- storePSMUriColumn()
: MzTabFile
- storeQC()
: FileHandler
- storeRecursive_()
: ParamEditor
- storeRotationAndZoom()
: Plot3DOpenGLCanvas
- storeScoredProcessingResults_()
: OMSFileStore
- storeScoreTypes_()
: OMSFileStore
- storeSmallMoleculeReliabilityColumn()
: MzTabFile
- storeSmallMoleculeUriColumn()
: MzTabFile
- storeSpectraMSP()
: TargetedSpectraExtractor
- storeSpectrum()
: FileHandler
- storeSpectrum_()
: FIAMSDataProcessor
- storeTIC()
: DTA2DFile
- storeTransformations()
: FileHandler
- storeTransitions()
: FileHandler
- storeVersionAndDate_()
: OMSFileStore
- storeVisibleChromatogram()
: LayerStoreDataPeakMapVisible
- storeVisibleCM()
: LayerStoreDataConsensusMapVisible
- storeVisibleData()
: LayerData1DChrom
, LayerData1DIonMobility
, LayerData1DPeak
, LayerDataBase
, LayerDataChrom
, LayerDataConsensus
, LayerDataFeature
, LayerDataIdent
, LayerDataIonMobility
, LayerDataPeak
- storeVisibleExperiment()
: LayerStoreDataPeakMapVisible
- storeVisibleFM()
: LayerStoreDataFeatureMapVisible
- storeVisibleIdent()
: LayerStoreDataIdentVisible
- storeVisibleSpectrum()
: LayerStoreDataPeakMapVisible
- StreamElement_()
: FuzzyStringComparator::StreamElement_
- streamEnd()
: Bzip2Ifstream
, GzipIfstream
- StreamHandler()
: StreamHandler
- StreamStruct()
: LogStreamBuf::StreamStruct
- String()
: String
- stringListToIsotopeCorrectionMatrix_()
: IsobaricQuantitationMethod
- StringListUtils()
: StringListUtils
- StringManager()
: StringManager
- stringSimdDecoder_()
: Base64
- stringSimdEncoder_()
: Base64
- StringView()
: StringView
- stripExtension()
: FileHandler
- subset()
: MRMTransitionGroup< ChromatogramType, TransitionType >
- subsetDependent()
: MRMTransitionGroup< ChromatogramType, TransitionType >
- substitute()
: String
- substr()
: String
, StringView
- suffix()
: Param::ParamNode
, String
- sum()
: BasicStatistics< RealT >
- sumIntensity_()
: MSstatsFile
, TriqlerFile
- Summary()
: Summary
- SummaryStatistics()
: SummaryStatistics< T >
- supportMax()
: LinearInterpolation< Key, Value >
- supportMax_0()
: BilinearInterpolation< Key, Value >
- supportMax_1()
: BilinearInterpolation< Key, Value >
- supportMin()
: LinearInterpolation< Key, Value >
- supportMin_0()
: BilinearInterpolation< Key, Value >
- supportMin_1()
: BilinearInterpolation< Key, Value >
- SVOutStream()
: SVOutStream
- swap()
: ConsensusMap
, ConstRefVector< ContainerT >
, DocumentIdentifier
, DPosition< D, TCoordinateType >
, FeatureMap
, Gravitator
, IdentificationData
, Weights
, unique_xerces_ptr< T >
, MetaInfoInterface
, Mobilogram
, MSExperiment
, PeakGroup
, UniqueIdIndexer< T >
, UniqueIdInterface
- swapDimensions()
: DRange< D >
- swapExtension()
: FileHandler
- swapFeaturesOnly()
: FeatureMap
- SwathLibraryStats()
: SwathLibraryStats
- SwathMap()
: SwathMap
- SwathMapMassCorrection()
: SwathMapMassCorrection
- SwathQC()
: SwathQC
- SwathTabWidget()
: SwathTabWidget
- SwathWizardBase()
: SwathWizardBase
- switchKR()
: MRMDecoy
- switchOrientation_()
: SpectraIDViewTab
- switchScores()
: IDScoreSwitcherAlgorithm
- switchToGeneralScoreType()
: IDScoreSwitcherAlgorithm
- sync()
: LogStreamBuf
- sync_()
: RecentFilesMenu
- synchronizePeakAnnotations()
: LayerData1DPeak
- syncLF_()
: LogStreamBuf